RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 SYS1Q8N2H4 156 aa10.52□□□□□ -0.73
PTPRF-208ENST00000437607 MUL1Q969V5 352 aa10.52□□□□□ -0.73
PTPRF-208ENST00000437607 SLAMF6Q96DU3 332 aa10.52□□□□□ -0.73
PTPRF-208ENST00000437607 SH3GL3Q99963 347 aa10.52□□□□□ -0.73
PTPRF-208ENST00000437607 WACQ9BTA9 647 aa10.52□□□□□ -0.73
PTPRF-208ENST00000437607 ABHD6Q9BV23 337 aa10.52□□□□□ -0.73
PTPRF-208ENST00000437607 CISD1Q9NZ45 108 aaKnown RBP10.52□□□□□ -0.73
PTPRF-208ENST00000437607 A8MV72 311 aaPredicted RBP10.51□□□□□ -0.73
PTPRF-208ENST00000437607 J3QLW9 94 aa10.51□□□□□ -0.73
PTPRF-208ENST00000437607 SSX4O60224 188 aa10.51□□□□□ -0.73
PTPRF-208ENST00000437607 UBL3O95164 117 aa10.51□□□□□ -0.73
PTPRF-208ENST00000437607 H2BFMP0C1H6 154 aa10.51□□□□□ -0.73
PTPRF-208ENST00000437607 CD79AP11912 226 aa10.51□□□□□ -0.73
PTPRF-208ENST00000437607 ZNF19P17023 458 aa10.51□□□□□ -0.73
PTPRF-208ENST00000437607 HSD11B1P28845 292 aa10.51□□□□□ -0.73
PTPRF-208ENST00000437607 RPL5P46777 297 aaKnown RBP10.51□□□□□ -0.73
PTPRF-208ENST00000437607 RIDAP52758 137 aaKnown RBP10.51□□□□□ -0.73
PTPRF-208ENST00000437607 MRPL28Q13084 256 aaKnown RBP10.51□□□□□ -0.73
PTPRF-208ENST00000437607 BLMHQ13867 455 aa10.51□□□□□ -0.73
PTPRF-208ENST00000437607 PPA1Q15181 289 aa10.51□□□□□ -0.73
PTPRF-208ENST00000437607 RAB35Q15286 201 aa10.51□□□□□ -0.73
PTPRF-208ENST00000437607 SPHARQ15513 63 aa10.51□□□□□ -0.73
PTPRF-208ENST00000437607 TAF13Q15543 124 aa10.51□□□□□ -0.73
PTPRF-208ENST00000437607 ZNF829Q3KNS6 432 aaPredicted RBP10.51□□□□□ -0.73
PTPRF-208ENST00000437607 TBRG1Q3YBR2 411 aa10.51□□□□□ -0.73
PTPRF-208ENST00000437607 TP53I3Q53FA7 332 aa10.51□□□□□ -0.73
PTPRF-208ENST00000437607 UBE2UQ5VVX9 321 aa10.51□□□□□ -0.73
PTPRF-208ENST00000437607 OR7E24Q6IFN5 339 aa10.51□□□□□ -0.73
PTPRF-208ENST00000437607 C11orf71Q6IPW1 123 aa10.51□□□□□ -0.73
PTPRF-208ENST00000437607 ZNF544Q6NX49 715 aa10.51□□□□□ -0.73
PTPRF-208ENST00000437607 TMEM53Q6P2H8 277 aa10.51□□□□□ -0.73
PTPRF-208ENST00000437607 LRRN1Q6UXK5 716 aa10.51□□□□□ -0.73
PTPRF-208ENST00000437607 CFAP77Q6ZQR2 320 aa10.51□□□□□ -0.73
PTPRF-208ENST00000437607 C17orf78Q8N4C9 275 aa10.51□□□□□ -0.73
PTPRF-208ENST00000437607 ZNF433Q8N7K0 673 aaPredicted RBP10.51□□□□□ -0.73
PTPRF-208ENST00000437607 NANOGP1Q8N7R0 232 aa10.51□□□□□ -0.73
PTPRF-208ENST00000437607 YIPF7Q8N8F6 280 aa10.51□□□□□ -0.73
PTPRF-208ENST00000437607 GJC3Q8NFK1 279 aa10.51□□□□□ -0.73
PTPRF-208ENST00000437607 HAVCR2Q8TDQ0 301 aa10.51□□□□□ -0.73
PTPRF-208ENST00000437607 ST7LQ8TDW4 575 aa10.51□□□□□ -0.73
PTPRF-208ENST00000437607 RNF133Q8WVZ7 376 aa10.51□□□□□ -0.73
PTPRF-208ENST00000437607 SPRYD4Q8WW59 207 aaPredicted RBP10.51□□□□□ -0.73
PTPRF-208ENST00000437607 OR8B4Q96RC9 309 aa10.51□□□□□ -0.73
PTPRF-208ENST00000437607 MROQ9BYG7 248 aa10.51□□□□□ -0.73
PTPRF-208ENST00000437607 HDHD2Q9H0R4 259 aa10.51□□□□□ -0.73
PTPRF-208ENST00000437607 RNF121Q9H920 327 aa10.51□□□□□ -0.73
PTPRF-208ENST00000437607 CENPMQ9NSP4 180 aa10.51□□□□□ -0.73
PTPRF-208ENST00000437607 ACOXLQ9NUZ1 547 aa10.51□□□□□ -0.73
PTPRF-208ENST00000437607 PLEK2Q9NYT0 353 aa10.51□□□□□ -0.73
PTPRF-208ENST00000437607 LSM2Q9Y333 95 aaKnown RBP10.51□□□□□ -0.73
PTPRF-208ENST00000437607 METTL15A6NJ78 407 aa10.5□□□□□ -0.73
PTPRF-208ENST00000437607 E7EQL1 145 aa10.5□□□□□ -0.73
PTPRF-208ENST00000437607 PSMD9O00233 223 aa10.5□□□□□ -0.73
PTPRF-208ENST00000437607 ABCD4O14678 606 aa10.5□□□□□ -0.73
PTPRF-208ENST00000437607 RER1O15258 196 aa10.5□□□□□ -0.73
PTPRF-208ENST00000437607 SGCEO43556 437 aa10.5□□□□□ -0.73
PTPRF-208ENST00000437607 SULT1C4O75897 302 aa10.5□□□□□ -0.73
PTPRF-208ENST00000437607 WNT11O96014 354 aa10.5□□□□□ -0.73
PTPRF-208ENST00000437607 IFNA2P01563 188 aa10.5□□□□□ -0.73
PTPRF-208ENST00000437607 TACSTD2P09758 323 aa10.5□□□□□ -0.73
PTPRF-208ENST00000437607 ZNF32P17041 273 aa10.5□□□□□ -0.73
PTPRF-208ENST00000437607 HTR5AP47898 357 aa10.5□□□□□ -0.73
PTPRF-208ENST00000437607 GBX2P52951 348 aaPredicted RBP10.5□□□□□ -0.73
PTPRF-208ENST00000437607 GRB2P62993 217 aaKnown RBP10.5□□□□□ -0.73
PTPRF-208ENST00000437607 BDH1Q02338 343 aa10.5□□□□□ -0.73
PTPRF-208ENST00000437607 ROM1Q03395 351 aa10.5□□□□□ -0.73
PTPRF-208ENST00000437607 MLLT11Q13015 90 aaPredicted RBP10.5□□□□□ -0.73
PTPRF-208ENST00000437607 TIGD6Q17RP2 521 aa10.5□□□□□ -0.73
PTPRF-208ENST00000437607 CHRFAM7AQ494W8 412 aa10.5□□□□□ -0.73
PTPRF-208ENST00000437607 HIKESHIQ53FT3 197 aa10.5□□□□□ -0.73
PTPRF-208ENST00000437607 XAF1Q6GPH4 301 aa10.5□□□□□ -0.73
PTPRF-208ENST00000437607 GPR141Q7Z602 305 aa10.5□□□□□ -0.73
PTPRF-208ENST00000437607 SYT9Q86SS6 491 aa10.5□□□□□ -0.73
PTPRF-208ENST00000437607 HIST2H2ABQ8IUE6 130 aaPredicted RBP10.5□□□□□ -0.73
PTPRF-208ENST00000437607 CCDC36Q8IYA8 594 aa10.5□□□□□ -0.73
PTPRF-208ENST00000437607 ZNF679Q8IYX0 411 aa10.5□□□□□ -0.73
PTPRF-208ENST00000437607 BCL2L2Q92843 193 aaPredicted RBP10.5□□□□□ -0.73
PTPRF-208ENST00000437607 UFD1Q92890 307 aa10.5□□□□□ -0.73
PTPRF-208ENST00000437607 MAP6Q96JE9 813 aa10.5□□□□□ -0.73
PTPRF-208ENST00000437607 OR5M11Q96RB7 305 aa10.5□□□□□ -0.73
PTPRF-208ENST00000437607 AMELYQ99218 206 aa10.5□□□□□ -0.73
PTPRF-208ENST00000437607 ATF6BQ99941 703 aa10.5□□□□□ -0.73
PTPRF-208ENST00000437607 USB1Q9BQ65 265 aaKnown RBP10.5□□□□□ -0.73
PTPRF-208ENST00000437607 NIPAL2Q9H841 368 aa10.5□□□□□ -0.73
PTPRF-208ENST00000437607 LRP12Q9Y561 859 aa10.5□□□□□ -0.73
PTPRF-208ENST00000437607 PRR32B1ATL7 298 aa10.49□□□□□ -0.73
PTPRF-208ENST00000437607 PHF1O43189 567 aaPredicted RBP10.49□□□□□ -0.73
PTPRF-208ENST00000437607 ZNF254O75437 659 aa10.49□□□□□ -0.73
PTPRF-208ENST00000437607 INMTO95050 263 aa10.49□□□□□ -0.73
PTPRF-208ENST00000437607 ABHD16AO95870 558 aa10.49□□□□□ -0.73
PTPRF-208ENST00000437607 HLA-HP01893 362 aa10.49□□□□□ -0.73
PTPRF-208ENST00000437607 JUNBP17275 347 aaPredicted RBP10.49□□□□□ -0.73
PTPRF-208ENST00000437607 ARR3P36575 388 aa10.49□□□□□ -0.73
PTPRF-208ENST00000437607 OPRL1P41146 370 aa10.49□□□□□ -0.73
PTPRF-208ENST00000437607 OR12D2P58182 307 aa10.49□□□□□ -0.73
PTPRF-208ENST00000437607 PLP2Q04941 152 aa10.49□□□□□ -0.73
PTPRF-208ENST00000437607 SPOCK1Q08629 439 aa10.49□□□□□ -0.73
PTPRF-208ENST00000437607 RAB39AQ14964 217 aa10.49□□□□□ -0.73
PTPRF-208ENST00000437607 GSG1Q2KHT4 349 aa10.49□□□□□ -0.73
PTPRF-208ENST00000437607 TMEM249Q2WGJ8 235 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms