RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 CCL2P13500 99 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 SELEP16581 610 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 PSMA1P25786 263 aaKnown RBP8.76□□□□□ -1.01
CD44-207ENST00000425428 GRNP28799 593 aaKnown RBP8.76□□□□□ -1.01
CD44-207ENST00000425428 TTKP33981 857 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 MAP2K4P45985 399 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 CCR9P51686 369 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 UCP2P55851 309 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 BSPH1Q075Z2 132 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 ACSM1Q08AH1 577 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 IRF3Q14653 427 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 GFOD2Q3B7J2 385 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 ZNF718Q3SXZ3 478 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 ARMCX4Q5H9R4 360 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 MS4A15Q8N5U1 240 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 RFLNBQ8N5W9 214 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 OR10S1Q8NGN2 331 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 OR1J1Q8NGS3 322 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 SLC7A6Q92536 515 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 PELI1Q96FA3 418 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 PIK3IP1Q96FE7 263 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 SPOCK3Q9BQ16 436 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 PBOV1Q9GZY1 135 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 NEK6Q9HC98 313 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 CRIM1Q9NZV1 1036 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 RNF115Q9Y4L5 304 aa8.76□□□□□ -1.01
CD44-207ENST00000425428 LOC100509620A0A075B734 347 aa8.75□□□□□ -1.01
CD44-207ENST00000425428 IGHV2OR16-5A0A0B4J2B6 119 aa8.75□□□□□ -1.01
CD44-207ENST00000425428 ZNF503-AS2A6NEH8 195 aa8.75□□□□□ -1.01
CD44-207ENST00000425428 TRIM64A6NGJ6 449 aa8.75□□□□□ -1.01
CD44-207ENST00000425428 MAGEB4O15481 346 aaPredicted RBP8.75□□□□□ -1.01
CD44-207ENST00000425428 CELA3BP08861 270 aa8.75□□□□□ -1.01
CD44-207ENST00000425428 DBHP09172 617 aa8.75□□□□□ -1.01
CD44-207ENST00000425428 OCM2P0CE71 109 aa8.75□□□□□ -1.01
CD44-207ENST00000425428 OCMP0CE72 109 aaPredicted RBP8.75□□□□□ -1.01
CD44-207ENST00000425428 FAM157BP0CG42 384 aa8.75□□□□□ -1.01
CD44-207ENST00000425428 CELP19835 753 aa8.75□□□□□ -1.01
CD44-207ENST00000425428 OTX1P32242 354 aaPredicted RBP8.75□□□□□ -1.01
CD44-207ENST00000425428 PSMB10P40306 273 aa8.75□□□□□ -1.01
CD44-207ENST00000425428 PPP1CBP62140 327 aa8.75□□□□□ -1.01
CD44-207ENST00000425428 SLC3A1Q07837 685 aa8.75□□□□□ -1.01
CD44-207ENST00000425428 SNTB2Q13425 540 aaKnown RBP8.75□□□□□ -1.01
CD44-207ENST00000425428 CDSNQ15517 529 aa8.75□□□□□ -1.01
CD44-207ENST00000425428 TIMM50Q3ZCQ8 353 aa8.75□□□□□ -1.01
CD44-207ENST00000425428 UBE2UQ5VVX9 321 aa8.75□□□□□ -1.01
CD44-207ENST00000425428 RGS7BPQ6MZT1 257 aaPredicted RBP8.75□□□□□ -1.01
CD44-207ENST00000425428 FDX2Q6P4F2 183 aa8.75□□□□□ -1.01
CD44-207ENST00000425428 ZNF584Q8IVC4 421 aa8.75□□□□□ -1.01
CD44-207ENST00000425428 OR2G2Q8NGZ5 317 aa8.75□□□□□ -1.01
CD44-207ENST00000425428 SIGLEC11Q96RL6 698 aa8.75□□□□□ -1.01
CD44-207ENST00000425428 C1QTNF5Q9BXJ0 243 aa8.75□□□□□ -1.01
CD44-207ENST00000425428 OR51B6Q9H340 312 aa8.75□□□□□ -1.01
CD44-207ENST00000425428 NOX3Q9HBY0 568 aa8.75□□□□□ -1.01
CD44-207ENST00000425428 NPDC1Q9NQX5 325 aaPredicted RBP8.75□□□□□ -1.01
CD44-207ENST00000425428 FAIMQ9NVQ4 179 aa8.75□□□□□ -1.01
CD44-207ENST00000425428 NUFIP1Q9UHK0 495 aaKnown RBP8.75□□□□□ -1.01
CD44-207ENST00000425428 RTTNQ86VV8 2226 aa8.75□□□□□ -1.01
CD44-207ENST00000425428 A0A0U1RQV5 110 aa8.74□□□□□ -1.01
CD44-207ENST00000425428 PNMA8CA0A1B0GUJ8 204 aa8.74□□□□□ -1.01
CD44-207ENST00000425428 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.74□□□□□ -1.01
CD44-207ENST00000425428 GGT3PA6NGU5 568 aa8.74□□□□□ -1.01
CD44-207ENST00000425428 H3BSA7 217 aa8.74□□□□□ -1.01
CD44-207ENST00000425428 CCRL2O00421 344 aa8.74□□□□□ -1.01
CD44-207ENST00000425428 SYT7O43581 403 aa8.74□□□□□ -1.01
CD44-207ENST00000425428 THBDP07204 575 aa8.74□□□□□ -1.01
CD44-207ENST00000425428 SLC2A1P11166 492 aa8.74□□□□□ -1.01
CD44-207ENST00000425428 PSKH1P11801 424 aa8.74□□□□□ -1.01
CD44-207ENST00000425428 BMP4P12644 408 aa8.74□□□□□ -1.01
CD44-207ENST00000425428 CD53P19397 219 aa8.74□□□□□ -1.01
CD44-207ENST00000425428 MAPK3P27361 379 aaPredicted RBP8.74□□□□□ -1.01
CD44-207ENST00000425428 SNTB1Q13884 538 aaKnown RBP8.74□□□□□ -1.01
CD44-207ENST00000425428 CDK5R1Q15078 307 aa8.74□□□□□ -1.01
CD44-207ENST00000425428 NCMAPQ5T1S8 102 aa8.74□□□□□ -1.01
CD44-207ENST00000425428 ZNF684Q5T5D7 378 aa8.74□□□□□ -1.01
CD44-207ENST00000425428 PGAP1Q75T13 922 aa8.74□□□□□ -1.01
CD44-207ENST00000425428 DOK3Q7L591 496 aa8.74□□□□□ -1.01
CD44-207ENST00000425428 GPR141Q7Z602 305 aa8.74□□□□□ -1.01
CD44-207ENST00000425428 CATSPERDQ86XM0 798 aa8.74□□□□□ -1.01
CD44-207ENST00000425428 TSEN15Q8WW01 171 aaKnown RBP8.74□□□□□ -1.01
CD44-207ENST00000425428 SGCDQ92629 289 aa8.74□□□□□ -1.01
CD44-207ENST00000425428 SMIM19Q96E16 107 aa8.74□□□□□ -1.01
CD44-207ENST00000425428 NPAP1Q9NZP6 1156 aa8.74□□□□□ -1.01
CD44-207ENST00000425428 FBXO9Q9UK97 447 aaPredicted RBP8.74□□□□□ -1.01
CD44-207ENST00000425428 HHLA2Q9UM44 414 aa8.74□□□□□ -1.01
CD44-207ENST00000425428 NOP16Q9Y3C1 178 aaKnown RBP8.74□□□□□ -1.01
CD44-207ENST00000425428 CMAHPQ9Y471 501 aa8.74□□□□□ -1.01
CD44-207ENST00000425428 ANKHD1Q8IWZ3 2542 aaKnown RBP8.74□□□□□ -1.01
CD44-207ENST00000425428 ZNF35P13682 527 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 ZNF20P17024 532 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 NR4A1P22736 598 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 GLRXP35754 106 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 DDOSTP39656 456 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 MAP2K3P46734 347 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 RPL5P46777 297 aaKnown RBP8.73□□□□□ -1.01
CD44-207ENST00000425428 ODF4Q2M2E3 257 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 YIF1BQ5BJH7 314 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 LIPKQ5VXJ0 399 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 SP5Q6BEB4 398 aaPredicted RBP8.73□□□□□ -1.01
CD44-207ENST00000425428 VHLLQ6RSH7 139 aa8.73□□□□□ -1.01
CD44-207ENST00000425428 PAMR1Q6UXH9 720 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms