RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 ADI1Q9BV57 179 aa10.9□□□□□ -0.66
LINC00339-202ENST00000416769 VSX1Q9NZR4 365 aaPredicted RBP10.9□□□□□ -0.66
LINC00339-202ENST00000416769 GMPPBQ9Y5P6 360 aa10.9□□□□□ -0.66
LINC00339-202ENST00000416769 LOC100509620A0A075B734 347 aa10.89□□□□□ -0.67
LINC00339-202ENST00000416769 PRSS37A4D1T9 235 aa10.89□□□□□ -0.67
LINC00339-202ENST00000416769 TRAPPC2LH3BP13 241 aa10.89□□□□□ -0.67
LINC00339-202ENST00000416769 RENP00797 406 aa10.89□□□□□ -0.67
LINC00339-202ENST00000416769 ZNF81P51508 661 aa10.89□□□□□ -0.67
LINC00339-202ENST00000416769 MMP15P51511 669 aa10.89□□□□□ -0.67
LINC00339-202ENST00000416769 ZNF133P52736 654 aaPredicted RBP10.89□□□□□ -0.67
LINC00339-202ENST00000416769 CLRN1P58418 232 aa10.89□□□□□ -0.67
LINC00339-202ENST00000416769 SRSF4Q08170 494 aaKnown RBP10.89□□□□□ -0.67
LINC00339-202ENST00000416769 IL18R1Q13478 541 aa10.89□□□□□ -0.67
LINC00339-202ENST00000416769 TBC1D28Q2M2D7 210 aa10.89□□□□□ -0.67
LINC00339-202ENST00000416769 PABPC1L2AQ5JQF8 200 aa10.89□□□□□ -0.67
LINC00339-202ENST00000416769 LEG1Q6P5S2 330 aa10.89□□□□□ -0.67
LINC00339-202ENST00000416769 IZUMO2Q6UXV1 221 aa10.89□□□□□ -0.67
LINC00339-202ENST00000416769 PTCHD4Q6ZW05 846 aa10.89□□□□□ -0.67
LINC00339-202ENST00000416769 SLC16A14Q7RTX9 510 aa10.89□□□□□ -0.67
LINC00339-202ENST00000416769 SLC37A3Q8NCC5 494 aa10.89□□□□□ -0.67
LINC00339-202ENST00000416769 CYGBQ8WWM9 190 aa10.89□□□□□ -0.67
LINC00339-202ENST00000416769 C11orf40Q8WZ69 217 aa10.89□□□□□ -0.67
LINC00339-202ENST00000416769 MCHR2Q969V1 340 aa10.89□□□□□ -0.67
LINC00339-202ENST00000416769 PLEKHA8Q96JA3 519 aa10.89□□□□□ -0.67
LINC00339-202ENST00000416769 NMNAT3Q96T66 252 aa10.89□□□□□ -0.67
LINC00339-202ENST00000416769 FN3KQ9H479 309 aa10.89□□□□□ -0.67
LINC00339-202ENST00000416769 POFUT1Q9H488 388 aa10.89□□□□□ -0.67
LINC00339-202ENST00000416769 UNKLQ9H9P5 680 aaKnown RBP10.89□□□□□ -0.67
LINC00339-202ENST00000416769 DECR2Q9NUI1 292 aa10.89□□□□□ -0.67
LINC00339-202ENST00000416769 NKIRAS2Q9NYR9 191 aa10.89□□□□□ -0.67
LINC00339-202ENST00000416769 UGT2A1Q9Y4X1 527 aa10.89□□□□□ -0.67
LINC00339-202ENST00000416769 MDFIC2A0A1B0GVS7 189 aa10.88□□□□□ -0.67
LINC00339-202ENST00000416769 SLC22A23A1A5C7 686 aa10.88□□□□□ -0.67
LINC00339-202ENST00000416769 OR6C68A6NDL8 312 aa10.88□□□□□ -0.67
LINC00339-202ENST00000416769 RIIAD1A6NNX1 92 aa10.88□□□□□ -0.67
LINC00339-202ENST00000416769 J3QLI3 93 aa10.88□□□□□ -0.67
LINC00339-202ENST00000416769 MPZL2O60487 215 aa10.88□□□□□ -0.67
LINC00339-202ENST00000416769 NGFP01138 241 aa10.88□□□□□ -0.67
LINC00339-202ENST00000416769 IGHV3-13P01766 116 aa10.88□□□□□ -0.67
LINC00339-202ENST00000416769 ZNF3P17036 446 aa10.88□□□□□ -0.67
LINC00339-202ENST00000416769 ZNF32P17041 273 aa10.88□□□□□ -0.67
LINC00339-202ENST00000416769 SCGB2A2Q13296 93 aa10.88□□□□□ -0.67
LINC00339-202ENST00000416769 HFEQ30201 348 aa10.88□□□□□ -0.67
LINC00339-202ENST00000416769 PCGF3Q3KNV8 242 aa10.88□□□□□ -0.67
LINC00339-202ENST00000416769 ZNF691Q5VV52 312 aa10.88□□□□□ -0.67
LINC00339-202ENST00000416769 TMEM53Q6P2H8 277 aa10.88□□□□□ -0.67
LINC00339-202ENST00000416769 SLC25A47Q6Q0C1 308 aa10.88□□□□□ -0.67
LINC00339-202ENST00000416769 TCEANCQ8N8B7 351 aa10.88□□□□□ -0.67
LINC00339-202ENST00000416769 SDR9C7Q8NEX9 313 aa10.88□□□□□ -0.67
LINC00339-202ENST00000416769 NOXO1Q8NFA2 376 aa10.88□□□□□ -0.67
LINC00339-202ENST00000416769 OR8J1Q8NGP2 316 aa10.88□□□□□ -0.67
LINC00339-202ENST00000416769 SLC25A40Q8TBP6 338 aa10.88□□□□□ -0.67
LINC00339-202ENST00000416769 PTP4A1Q93096 173 aa10.88□□□□□ -0.67
LINC00339-202ENST00000416769 NABP1Q96AH0 204 aa10.88□□□□□ -0.67
LINC00339-202ENST00000416769 NMD3Q96D46 503 aaKnown RBP10.88□□□□□ -0.67
LINC00339-202ENST00000416769 MARS2Q96GW9 593 aaKnown RBP10.88□□□□□ -0.67
LINC00339-202ENST00000416769 DCLRE1CQ96SD1 692 aaKnown RBP10.88□□□□□ -0.67
LINC00339-202ENST00000416769 APOL4Q9BPW4 351 aa10.88□□□□□ -0.67
LINC00339-202ENST00000416769 OR2J1Q9GZK6 312 aa10.88□□□□□ -0.67
LINC00339-202ENST00000416769 ZNF696Q9H7X3 374 aa10.88□□□□□ -0.67
LINC00339-202ENST00000416769 MSL2Q9HCI7 577 aa10.88□□□□□ -0.67
LINC00339-202ENST00000416769 DDX28Q9NUL7 540 aaKnown RBP10.88□□□□□ -0.67
LINC00339-202ENST00000416769 SLCO1C1Q9NYB5 712 aa10.88□□□□□ -0.67
LINC00339-202ENST00000416769 RAB26Q9ULW5 256 aa10.88□□□□□ -0.67
LINC00339-202ENST00000416769 HSPE1-MOB4S4R3N1 261 aa10.88□□□□□ -0.67
LINC00339-202ENST00000416769 VWFP04275 2813 aa10.87□□□□□ -0.67
LINC00339-202ENST00000416769 PRR23D1E9PI22 279 aaPredicted RBP10.87□□□□□ -0.67
LINC00339-202ENST00000416769 PRKYO43930 277 aa10.87□□□□□ -0.67
LINC00339-202ENST00000416769 PRR23D2P0DMB1 279 aaPredicted RBP10.87□□□□□ -0.67
LINC00339-202ENST00000416769 PAICSP22234 425 aaKnown RBP10.87□□□□□ -0.67
LINC00339-202ENST00000416769 OMGP23515 440 aa10.87□□□□□ -0.67
LINC00339-202ENST00000416769 CRABP1P29762 137 aa10.87□□□□□ -0.67
LINC00339-202ENST00000416769 SLC25A1P53007 311 aa10.87□□□□□ -0.67
LINC00339-202ENST00000416769 SNRPGP62308 76 aaKnown RBP10.87□□□□□ -0.67
LINC00339-202ENST00000416769 CD47Q08722 323 aa10.87□□□□□ -0.67
LINC00339-202ENST00000416769 CRMP1Q14194 572 aa10.87□□□□□ -0.67
LINC00339-202ENST00000416769 SLC25A30Q5SVS4 291 aa10.87□□□□□ -0.67
LINC00339-202ENST00000416769 C10orf128Q5T292 105 aa10.87□□□□□ -0.67
LINC00339-202ENST00000416769 SHISA2Q6UWI4 295 aa10.87□□□□□ -0.67
LINC00339-202ENST00000416769 TREML4Q6UXN2 200 aa10.87□□□□□ -0.67
LINC00339-202ENST00000416769 CPOQ8IVL8 374 aa10.87□□□□□ -0.67
LINC00339-202ENST00000416769 SETD9Q8NE22 299 aa10.87□□□□□ -0.67
LINC00339-202ENST00000416769 RHOXF1Q8NHV9 184 aa10.87□□□□□ -0.67
LINC00339-202ENST00000416769 FAM81AQ8TBF8 368 aa10.87□□□□□ -0.67
LINC00339-202ENST00000416769 TMEM163Q8TC26 289 aa10.87□□□□□ -0.67
LINC00339-202ENST00000416769 NSMAFQ92636 917 aa10.87□□□□□ -0.67
LINC00339-202ENST00000416769 ELMOD3Q96FG2 381 aa10.87□□□□□ -0.67
LINC00339-202ENST00000416769 POM121L2Q96KW2 1035 aa10.87□□□□□ -0.67
LINC00339-202ENST00000416769 ZNF184Q99676 751 aaPredicted RBP10.87□□□□□ -0.67
LINC00339-202ENST00000416769 NMNAT2Q9BZQ4 307 aa10.87□□□□□ -0.67
LINC00339-202ENST00000416769 NUAK2Q9H093 628 aa10.87□□□□□ -0.67
LINC00339-202ENST00000416769 SRA1Q9HD15 236 aaKnown RBP10.87□□□□□ -0.67
LINC00339-202ENST00000416769 IMPAD1Q9NX62 359 aa10.87□□□□□ -0.67
LINC00339-202ENST00000416769 H2AFY2Q9P0M6 372 aaPredicted RBP10.87□□□□□ -0.67
LINC00339-202ENST00000416769 FBXL3Q9UKT7 428 aa10.87□□□□□ -0.67
LINC00339-202ENST00000416769 B9D1Q9UPM9 204 aa10.87□□□□□ -0.67
LINC00339-202ENST00000416769 C5orf49A4QMS7 147 aa10.86□□□□□ -0.67
LINC00339-202ENST00000416769 H7C1C5 153 aa10.86□□□□□ -0.67
LINC00339-202ENST00000416769 SLC16A7O60669 478 aa10.86□□□□□ -0.67
LINC00339-202ENST00000416769 KHDRBS3O75525 346 aaKnown RBP10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms