RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 CYB561A3Q8NBI2 242 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 RAB40AQ8WXH6 277 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 NEIL1Q96FI4 390 aaPredicted RBP9.66□□□□□ -0.86
USP4-204ENST00000416417 HCAR1Q9BXC0 346 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 NSRP1Q9H0G5 558 aaKnown RBP9.66□□□□□ -0.86
USP4-204ENST00000416417 MYLK2Q9H1R3 596 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 PNRC2Q9NPJ4 139 aaKnown RBP9.66□□□□□ -0.86
USP4-204ENST00000416417 MRPL22Q9NWU5 206 aaKnown RBP9.66□□□□□ -0.86
USP4-204ENST00000416417 MIOXQ9UGB7 285 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 ATPIF1Q9UII2 106 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 TMCC3Q9ULS5 477 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 PKD1L1Q8TDX9 2849 aa9.66□□□□□ -0.86
USP4-204ENST00000416417 OR10H3O60404 316 aa9.65□□□□□ -0.86
USP4-204ENST00000416417 SEMG1P04279 462 aa9.65□□□□□ -0.86
USP4-204ENST00000416417 MDKP21741 143 aaPredicted RBP9.65□□□□□ -0.86
USP4-204ENST00000416417 CA6P23280 308 aa9.65□□□□□ -0.86
USP4-204ENST00000416417 SLC6A6P31641 620 aa9.65□□□□□ -0.86
USP4-204ENST00000416417 FGF12P61328 243 aa9.65□□□□□ -0.86
USP4-204ENST00000416417 SRSF4Q08170 494 aaKnown RBP9.65□□□□□ -0.86
USP4-204ENST00000416417 DEFB112Q30KQ8 113 aa9.65□□□□□ -0.86
USP4-204ENST00000416417 SNAI3Q3KNW1 292 aa9.65□□□□□ -0.86
USP4-204ENST00000416417 KRTAP27-1Q3LI81 207 aa9.65□□□□□ -0.86
USP4-204ENST00000416417 CLEC12AQ5QGZ9 265 aa9.65□□□□□ -0.86
USP4-204ENST00000416417 RUSC1-AS1Q66K80 236 aa9.65□□□□□ -0.86
USP4-204ENST00000416417 SFRP4Q6FHJ7 346 aaPredicted RBP9.65□□□□□ -0.86
USP4-204ENST00000416417 SHISA2Q6UWI4 295 aa9.65□□□□□ -0.86
USP4-204ENST00000416417 BTNL3Q6UXE8 466 aa9.65□□□□□ -0.86
USP4-204ENST00000416417 COLCA1Q6ZS62 124 aa9.65□□□□□ -0.86
USP4-204ENST00000416417 OR8B3Q8NGG8 313 aa9.65□□□□□ -0.86
USP4-204ENST00000416417 OR51L1Q8NGJ5 315 aa9.65□□□□□ -0.86
USP4-204ENST00000416417 OR10S1Q8NGN2 331 aa9.65□□□□□ -0.86
USP4-204ENST00000416417 OR2AJ1Q8NGZ0 328 aa9.65□□□□□ -0.86
USP4-204ENST00000416417 OR2AE1Q8NHA4 323 aa9.65□□□□□ -0.86
USP4-204ENST00000416417 DACT3Q96B18 629 aaPredicted RBP9.65□□□□□ -0.86
USP4-204ENST00000416417 PYURFQ96I23 114 aa9.65□□□□□ -0.86
USP4-204ENST00000416417 MAP6Q96JE9 813 aa9.65□□□□□ -0.86
USP4-204ENST00000416417 OR8B2Q96RD0 313 aa9.65□□□□□ -0.86
USP4-204ENST00000416417 ATF6BQ99941 703 aa9.65□□□□□ -0.86
USP4-204ENST00000416417 NUDT16L1Q9BRJ7 211 aaKnown RBP9.65□□□□□ -0.86
USP4-204ENST00000416417 RASSF4Q9H2L5 321 aa9.65□□□□□ -0.86
USP4-204ENST00000416417 EGLN3Q9H6Z9 239 aa9.65□□□□□ -0.86
USP4-204ENST00000416417 SPAG4Q9NPE6 437 aa9.65□□□□□ -0.86
USP4-204ENST00000416417 KRCC1Q9NPI7 259 aaPredicted RBP9.65□□□□□ -0.86
USP4-204ENST00000416417 SAMD4AQ9UPU9 718 aaKnown RBP9.65□□□□□ -0.86
USP4-204ENST00000416417 N6AMT1Q9Y5N5 214 aa9.65□□□□□ -0.86
USP4-204ENST00000416417 C22orf46C9J442 243 aa9.64□□□□□ -0.87
USP4-204ENST00000416417 J3QW42 95 aa9.64□□□□□ -0.87
USP4-204ENST00000416417 HOXA3O43365 443 aaPredicted RBP9.64□□□□□ -0.87
USP4-204ENST00000416417 PLATP00750 562 aa9.64□□□□□ -0.87
USP4-204ENST00000416417 RNASE1P07998 156 aaKnown RBP9.64□□□□□ -0.87
USP4-204ENST00000416417 NOS3P29474 1203 aa9.64□□□□□ -0.87
USP4-204ENST00000416417 RRM2P31350 389 aa9.64□□□□□ -0.87
USP4-204ENST00000416417 GGT2P36268 569 aa9.64□□□□□ -0.87
USP4-204ENST00000416417 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.64□□□□□ -0.87
USP4-204ENST00000416417 POU4F2Q12837 409 aa9.64□□□□□ -0.87
USP4-204ENST00000416417 WDR25Q64LD2 544 aaPredicted RBP9.64□□□□□ -0.87
USP4-204ENST00000416417 LRRN1Q6UXK5 716 aa9.64□□□□□ -0.87
USP4-204ENST00000416417 ZNF841Q6ZN19 808 aa9.64□□□□□ -0.87
USP4-204ENST00000416417 SPATC1Q76KD6 591 aa9.64□□□□□ -0.87
USP4-204ENST00000416417 LNX2Q8N448 690 aa9.64□□□□□ -0.87
USP4-204ENST00000416417 FITM2Q8N6M3 262 aa9.64□□□□□ -0.87
USP4-204ENST00000416417 SPRYD4Q8WW59 207 aaPredicted RBP9.64□□□□□ -0.87
USP4-204ENST00000416417 SLC25A28Q96A46 364 aa9.64□□□□□ -0.87
USP4-204ENST00000416417 UPRTQ96BW1 309 aa9.64□□□□□ -0.87
USP4-204ENST00000416417 MMADHCQ9H3L0 296 aaPredicted RBP9.64□□□□□ -0.87
USP4-204ENST00000416417 CTSZQ9UBR2 303 aa9.64□□□□□ -0.87
USP4-204ENST00000416417 CYB5R1Q9UHQ9 305 aa9.64□□□□□ -0.87
USP4-204ENST00000416417 KIR2DS1A0A191URI9 304 aa9.63□□□□□ -0.87
USP4-204ENST00000416417 LRRC30A6NM36 301 aa9.63□□□□□ -0.87
USP4-204ENST00000416417 C3orf80F5H4A9 247 aa9.63□□□□□ -0.87
USP4-204ENST00000416417 IFNL4K9M1U5 179 aa9.63□□□□□ -0.87
USP4-204ENST00000416417 NDUFAB1O14561 156 aa9.63□□□□□ -0.87
USP4-204ENST00000416417 ARPC3O15145 178 aa9.63□□□□□ -0.87
USP4-204ENST00000416417 GMNNO75496 209 aa9.63□□□□□ -0.87
USP4-204ENST00000416417 SFTPBP07988 381 aa9.63□□□□□ -0.87
USP4-204ENST00000416417 SLC2A1P11166 492 aa9.63□□□□□ -0.87
USP4-204ENST00000416417 IRF2P14316 349 aa9.63□□□□□ -0.87
USP4-204ENST00000416417 GSSP48637 474 aa9.63□□□□□ -0.87
USP4-204ENST00000416417 RAD23AP54725 363 aa9.63□□□□□ -0.87
USP4-204ENST00000416417 ELF3P78545 371 aaPredicted RBP9.63□□□□□ -0.87
USP4-204ENST00000416417 ZNF92Q03936 586 aa9.63□□□□□ -0.87
USP4-204ENST00000416417 PPP1R8Q12972 351 aaKnown RBP9.63□□□□□ -0.87
USP4-204ENST00000416417 OR8G1Q15617 311 aa9.63□□□□□ -0.87
USP4-204ENST00000416417 PRR31Q5SQ13 230 aa9.63□□□□□ -0.87
USP4-204ENST00000416417 PGM2L1Q6PCE3 622 aa9.63□□□□□ -0.87
USP4-204ENST00000416417 PGAP1Q75T13 922 aa9.63□□□□□ -0.87
USP4-204ENST00000416417 MRPL21Q7Z2W9 205 aaKnown RBP9.63□□□□□ -0.87
USP4-204ENST00000416417 ZBTB46Q86UZ6 589 aa9.63□□□□□ -0.87
USP4-204ENST00000416417 C1orf87Q8N0U7 546 aa9.63□□□□□ -0.87
USP4-204ENST00000416417 OR9Q2Q8NGE9 314 aa9.63□□□□□ -0.87
USP4-204ENST00000416417 OR9Q1Q8NGQ5 310 aa9.63□□□□□ -0.87
USP4-204ENST00000416417 CMTM5Q96DZ9 223 aa9.63□□□□□ -0.87
USP4-204ENST00000416417 PLEKHA8Q96JA3 519 aa9.63□□□□□ -0.87
USP4-204ENST00000416417 TECTBQ96PL2 329 aa9.63□□□□□ -0.87
USP4-204ENST00000416417 PCGF1Q9BSM1 259 aa9.63□□□□□ -0.87
USP4-204ENST00000416417 MARCH7Q9H992 704 aa9.63□□□□□ -0.87
USP4-204ENST00000416417 CLN8Q9UBY8 286 aa9.63□□□□□ -0.87
USP4-204ENST00000416417 A0A1B0GWJ7 208 aa9.62□□□□□ -0.87
USP4-204ENST00000416417 CD300LBA8K4G0 201 aa9.62□□□□□ -0.87
USP4-204ENST00000416417 M0R135 149 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms