RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 PEX10O60683 326 aa12.21□□□□□ -0.45
CCDC88A-204ENST00000413716 LRP3O75074 770 aa12.21□□□□□ -0.45
CCDC88A-204ENST00000413716 SLC25A5P05141 298 aaKnown RBP12.21□□□□□ -0.45
CCDC88A-204ENST00000413716 C17orf67Q0P5P2 114 aa12.21□□□□□ -0.45
CCDC88A-204ENST00000413716 LRRC26Q2I0M4 334 aa12.21□□□□□ -0.45
CCDC88A-204ENST00000413716 MIDNQ504T8 468 aa12.21□□□□□ -0.45
CCDC88A-204ENST00000413716 SLC16A12Q6ZSM3 486 aa12.21□□□□□ -0.45
CCDC88A-204ENST00000413716 NTMT1Q9BV86 223 aa12.21□□□□□ -0.45
CCDC88A-204ENST00000413716 CDCP1Q9H5V8 836 aa12.21□□□□□ -0.45
CCDC88A-204ENST00000413716 CLMPQ9H6B4 373 aa12.21□□□□□ -0.45
CCDC88A-204ENST00000413716 YLPM1P49750 1951 aaKnown RBP12.21□□□□□ -0.46
CCDC88A-204ENST00000413716 CSF2RBP32927 897 aa12.21□□□□□ -0.46
CCDC88A-204ENST00000413716 HRH1P35367 487 aa12.21□□□□□ -0.46
CCDC88A-204ENST00000413716 HIST3H3Q16695 136 aa12.21□□□□□ -0.46
CCDC88A-204ENST00000413716 NEIL2Q969S2 332 aa12.21□□□□□ -0.46
CCDC88A-204ENST00000413716 ACY3Q96HD9 319 aa12.21□□□□□ -0.46
CCDC88A-204ENST00000413716 USP3Q9Y6I4 520 aa12.21□□□□□ -0.46
CCDC88A-204ENST00000413716 CYR61O00622 381 aa12.21□□□□□ -0.46
CCDC88A-204ENST00000413716 CRYBA1P05813 215 aa12.21□□□□□ -0.46
CCDC88A-204ENST00000413716 SP1P08047 785 aa12.21□□□□□ -0.46
CCDC88A-204ENST00000413716 SHC1P29353 583 aa12.21□□□□□ -0.46
CCDC88A-204ENST00000413716 SUCLG1P53597 346 aaKnown RBP12.21□□□□□ -0.46
CCDC88A-204ENST00000413716 DCXRQ7Z4W1 244 aa12.21□□□□□ -0.46
CCDC88A-204ENST00000413716 ZNF687Q8N1G0 1237 aa12.21□□□□□ -0.46
CCDC88A-204ENST00000413716 IL22RA2Q969J5 263 aa12.21□□□□□ -0.46
CCDC88A-204ENST00000413716 SOD2P04179 222 aa12.21□□□□□ -0.46
CCDC88A-204ENST00000413716 HOXD13P35453 343 aa12.21□□□□□ -0.46
CCDC88A-204ENST00000413716 RPL30P62888 115 aaKnown RBP12.21□□□□□ -0.46
CCDC88A-204ENST00000413716 IL17BQ9UHF5 180 aa12.21□□□□□ -0.46
CCDC88A-204ENST00000413716 FZD6O60353 706 aa12.2□□□□□ -0.46
CCDC88A-204ENST00000413716 CTSAP10619 480 aa12.2□□□□□ -0.46
CCDC88A-204ENST00000413716 CD226Q15762 336 aa12.2□□□□□ -0.46
CCDC88A-204ENST00000413716 CMTM4Q8IZR5 234 aa12.2□□□□□ -0.46
CCDC88A-204ENST00000413716 MUC15Q8N387 334 aa12.2□□□□□ -0.46
CCDC88A-204ENST00000413716 THOC3Q96J01 351 aaKnown RBP12.2□□□□□ -0.46
CCDC88A-204ENST00000413716 NAA60Q9H7X0 242 aa12.2□□□□□ -0.46
CCDC88A-204ENST00000413716 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.2□□□□□ -0.46
CCDC88A-204ENST00000413716 SCN5AQ14524 2016 aa12.2□□□□□ -0.46
CCDC88A-204ENST00000413716 NTSR1P30989 418 aa12.2□□□□□ -0.46
CCDC88A-204ENST00000413716 AANATQ16613 207 aa12.2□□□□□ -0.46
CCDC88A-204ENST00000413716 LANCL2Q9NS86 450 aa12.2□□□□□ -0.46
CCDC88A-204ENST00000413716 CLEC5AQ9NY25 188 aa12.2□□□□□ -0.46
CCDC88A-204ENST00000413716 SEBOXQ9HB31 216 aaPredicted RBP12.2□□□□□ -0.46
CCDC88A-204ENST00000413716 TCF21O43680 179 aa12.2□□□□□ -0.46
CCDC88A-204ENST00000413716 HIST1H1BP16401 226 aaKnown RBP12.2□□□□□ -0.46
CCDC88A-204ENST00000413716 OR2A2Q6IF42 318 aa12.2□□□□□ -0.46
CCDC88A-204ENST00000413716 ABI3BPQ7Z7G0 1075 aa12.2□□□□□ -0.46
CCDC88A-204ENST00000413716 CHST6Q9GZX3 395 aa12.2□□□□□ -0.46
CCDC88A-204ENST00000413716 C12orf49Q9H741 205 aa12.2□□□□□ -0.46
CCDC88A-204ENST00000413716 RBP4P02753 201 aa12.2□□□□□ -0.46
CCDC88A-204ENST00000413716 SSBP1Q04837 148 aaKnown RBP12.2□□□□□ -0.46
CCDC88A-204ENST00000413716 MEOX2P50222 304 aa12.2□□□□□ -0.46
CCDC88A-204ENST00000413716 JAG1P78504 1218 aa12.2□□□□□ -0.46
CCDC88A-204ENST00000413716 GPR17Q13304 367 aa12.2□□□□□ -0.46
CCDC88A-204ENST00000413716 SMIM21Q3B7S5 101 aa12.2□□□□□ -0.46
CCDC88A-204ENST00000413716 DUS3LQ96G46 650 aaKnown RBP12.2□□□□□ -0.46
CCDC88A-204ENST00000413716 BANF2Q9H503 90 aa12.2□□□□□ -0.46
CCDC88A-204ENST00000413716 CORINQ9Y5Q5 1042 aa12.2□□□□□ -0.46
CCDC88A-204ENST00000413716 C1orf167Q5SNV9 1468 aa12.2□□□□□ -0.46
CCDC88A-204ENST00000413716 KIR2DS5A0A0G2JLQ3 304 aa12.2□□□□□ -0.46
CCDC88A-204ENST00000413716 A0A0G2JNG1 304 aa12.2□□□□□ -0.46
CCDC88A-204ENST00000413716 KIR2DS3K7RE56 304 aa12.2□□□□□ -0.46
CCDC88A-204ENST00000413716 KIR2DS5Q14953 304 aa12.2□□□□□ -0.46
CCDC88A-204ENST00000413716 MYOZ3Q8TDC0 251 aa12.2□□□□□ -0.46
CCDC88A-204ENST00000413716 EDARADDQ8WWZ3 215 aa12.2□□□□□ -0.46
CCDC88A-204ENST00000413716 GRAMD2BQ96HH9 432 aa12.2□□□□□ -0.46
CCDC88A-204ENST00000413716 LHX3Q9UBR4 397 aa12.2□□□□□ -0.46
CCDC88A-204ENST00000413716 A0A1B0GUH1 482 aa12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 HIST1H1TP22492 207 aaPredicted RBP12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 PKIAP61925 76 aa12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 ZDHHC16Q969W1 377 aa12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 GALMQ96C23 342 aa12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 SPNS1Q9H2V7 528 aa12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 COL5A2P05997 1499 aaPredicted RBP12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 GLTPD2A6NH11 291 aa12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 TOMM34Q15785 309 aaPredicted RBP12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 C14orf80Q86SX3 495 aa12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 GATA6Q92908 595 aa12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 C3orf30Q96M34 536 aa12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 UBE2MP61081 183 aaKnown RBP12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 DIMT1Q9UNQ2 313 aaKnown RBP12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 J3KTA2 159 aa12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 IL5P05113 134 aa12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 POU3F3P20264 500 aaPredicted RBP12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 NPY5RQ15761 445 aa12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 ACSM6Q6P461 480 aa12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 Q6ZSR6 202 aa12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 PSORS1C1Q9UIG5 152 aa12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 RIMBP3CA6NJZ7 1639 aa12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 RIMBP3BA6NNM3 1639 aa12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 RIMBP3Q9UFD9 1639 aa12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 EDN1P05305 212 aa12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 RHOBP62745 196 aa12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 OR2I1PQ8NGU4 316 aa12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 ZNF519Q8TB69 540 aa12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 A3GALT2U3KPV4 340 aa12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 SDC1P18827 310 aa12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 KCNJ10P78508 379 aa12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 ISCA2Q86U28 154 aa12.19□□□□□ -0.46
CCDC88A-204ENST00000413716 POU2F2P09086 479 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms