RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 FAHP16930 419 aa11.89□□□□□ -0.51
VPS54-203ENST00000409558 EPHA8P29322 1005 aaPredicted RBP11.89□□□□□ -0.51
VPS54-203ENST00000409558 CSRP2Q16527 193 aa11.89□□□□□ -0.51
VPS54-203ENST00000409558 FAM209AQ5JX71 171 aa11.89□□□□□ -0.51
VPS54-203ENST00000409558 ZNF626Q68DY1 528 aa11.89□□□□□ -0.51
VPS54-203ENST00000409558 ADGRE4PQ86SQ3 457 aa11.89□□□□□ -0.51
VPS54-203ENST00000409558 ST7LQ8TDW4 575 aa11.89□□□□□ -0.51
VPS54-203ENST00000409558 GPR137Q96N19 417 aa11.89□□□□□ -0.51
VPS54-203ENST00000409558 ZNF471Q9BX82 626 aaPredicted RBP11.89□□□□□ -0.51
VPS54-203ENST00000409558 ZNF768Q9H5H4 540 aaKnown RBP11.89□□□□□ -0.51
VPS54-203ENST00000409558 PLEK2Q9NYT0 353 aa11.89□□□□□ -0.51
VPS54-203ENST00000409558 SPEF1Q9Y4P9 236 aa11.89□□□□□ -0.51
VPS54-203ENST00000409558 LAMA5O15230 3695 aa11.89□□□□□ -0.51
VPS54-203ENST00000409558 TNFSF11O14788 317 aa11.89□□□□□ -0.51
VPS54-203ENST00000409558 ANGPTL7O43827 346 aa11.89□□□□□ -0.51
VPS54-203ENST00000409558 IGHG1P01857 330 aa11.89□□□□□ -0.51
VPS54-203ENST00000409558 PDGFAP04085 211 aa11.89□□□□□ -0.51
VPS54-203ENST00000409558 PGAM2P15259 253 aa11.89□□□□□ -0.51
VPS54-203ENST00000409558 GABRR1P24046 479 aa11.89□□□□□ -0.51
VPS54-203ENST00000409558 DLX5P56178 289 aa11.89□□□□□ -0.51
VPS54-203ENST00000409558 TRIM61Q5EBN2 209 aa11.89□□□□□ -0.51
VPS54-203ENST00000409558 PXDC1Q5TGL8 231 aa11.89□□□□□ -0.51
VPS54-203ENST00000409558 OR5L2Q8NGL0 311 aa11.89□□□□□ -0.51
VPS54-203ENST00000409558 OR10S1Q8NGN2 331 aa11.89□□□□□ -0.51
VPS54-203ENST00000409558 ROBO4Q8WZ75 1007 aa11.89□□□□□ -0.51
VPS54-203ENST00000409558 ACKR4Q9NPB9 350 aa11.89□□□□□ -0.51
VPS54-203ENST00000409558 RHBDD3Q9Y3P4 386 aa11.89□□□□□ -0.51
VPS54-203ENST00000409558 ADAM10O14672 748 aa11.88□□□□□ -0.51
VPS54-203ENST00000409558 C12orf45Q8N5I9 185 aaPredicted RBP11.88□□□□□ -0.51
VPS54-203ENST00000409558 POC1BQ8TC44 478 aa11.88□□□□□ -0.51
VPS54-203ENST00000409558 MARCH1Q8TCQ1 289 aa11.88□□□□□ -0.51
VPS54-203ENST00000409558 NECAB3Q96P71 396 aaPredicted RBP11.88□□□□□ -0.51
VPS54-203ENST00000409558 OR51B6Q9H340 312 aa11.88□□□□□ -0.51
VPS54-203ENST00000409558 DKKL1Q9UK85 242 aa11.88□□□□□ -0.51
VPS54-203ENST00000409558 NAP1L6A6NFF2 107 aa11.88□□□□□ -0.51
VPS54-203ENST00000409558 CTDSPLO15194 276 aa11.88□□□□□ -0.51
VPS54-203ENST00000409558 PPP3CBP16298 524 aa11.88□□□□□ -0.51
VPS54-203ENST00000409558 CD34P28906 385 aa11.88□□□□□ -0.51
VPS54-203ENST00000409558 CX3CR1P49238 355 aa11.88□□□□□ -0.51
VPS54-203ENST00000409558 CAPZA1P52907 286 aa11.88□□□□□ -0.51
VPS54-203ENST00000409558 GABREP78334 506 aa11.88□□□□□ -0.51
VPS54-203ENST00000409558 HACD4Q5VWC8 232 aa11.88□□□□□ -0.51
VPS54-203ENST00000409558 VASH2Q86V25 355 aa11.88□□□□□ -0.51
VPS54-203ENST00000409558 ADAD2Q8NCV1 583 aaKnown RBP11.88□□□□□ -0.51
VPS54-203ENST00000409558 ALKBH3Q96Q83 286 aaPredicted RBP11.88□□□□□ -0.51
VPS54-203ENST00000409558 KCNK17Q96T54 332 aa11.88□□□□□ -0.51
VPS54-203ENST00000409558 POTEKPQ9BYX7 375 aa11.88□□□□□ -0.51
VPS54-203ENST00000409558 EVA1AQ9H8M9 152 aa11.88□□□□□ -0.51
VPS54-203ENST00000409558 KCNN3Q9UGI6 736 aa11.88□□□□□ -0.51
VPS54-203ENST00000409558 RAB3AP20336 220 aa11.88□□□□□ -0.51
VPS54-203ENST00000409558 APOBEC1P41238 236 aaKnown RBP11.88□□□□□ -0.51
VPS54-203ENST00000409558 IL13RA1P78552 427 aa11.88□□□□□ -0.51
VPS54-203ENST00000409558 TMEM244Q5VVB8 128 aa11.88□□□□□ -0.51
VPS54-203ENST00000409558 ZNF546Q86UE3 836 aa11.88□□□□□ -0.51
VPS54-203ENST00000409558 PLPP5Q8NEB5 264 aa11.88□□□□□ -0.51
VPS54-203ENST00000409558 OR6M1Q8NGM8 313 aa11.88□□□□□ -0.51
VPS54-203ENST00000409558 LIPHQ8WWY8 451 aa11.88□□□□□ -0.51
VPS54-203ENST00000409558 SORCS2Q96PQ0 1159 aa11.88□□□□□ -0.51
VPS54-203ENST00000409558 ZNF416Q9BWM5 594 aa11.88□□□□□ -0.51
VPS54-203ENST00000409558 OR2S2Q9NQN1 319 aa11.88□□□□□ -0.51
VPS54-203ENST00000409558 TMEM131Q92545 1883 aa11.88□□□□□ -0.51
VPS54-203ENST00000409558 NPIPA2E9PIF3 369 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 E9PLN8 166 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 NPIPA3F8WFD2 350 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 SEC61A1P61619 476 aaKnown RBP11.87□□□□□ -0.51
VPS54-203ENST00000409558 SEZ6L2Q6UXD5 910 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 SLC38A6Q8IZM9 456 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 CLEC1AQ8NC01 280 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 OR1M1Q8NGA1 313 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 OR8B12Q8NGG6 310 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 LHFPL6Q9Y693 200 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 IGHV3-64DA0A0J9YX35 117 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 FAM230AA0A1W2PPH8 454 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 K7ESF4 209 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 SLC33A1O00400 549 aaPredicted RBP11.87□□□□□ -0.51
VPS54-203ENST00000409558 RP2O75695 350 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 TGM6O95932 706 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 VSIG8P0DPA2 414 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 TAS2R19P59542 299 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 PLPPR5Q32ZL2 321 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 TMUB2Q71RG4 321 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 NFAM1Q8NET5 270 aaPredicted RBP11.87□□□□□ -0.51
VPS54-203ENST00000409558 ZNF75AQ96N20 296 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 CHRDQ9H2X0 955 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 UCK1Q9HA47 277 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 B3GAT1Q9P2W7 334 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 OPN4Q9UHM6 478 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 MRPS28Q9Y2Q9 187 aaKnown RBP11.87□□□□□ -0.51
VPS54-203ENST00000409558 A0A1W2PQD3 144 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 A6NIZ1 184 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 STMND1H3BQB6 276 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 CD96P40200 585 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 RAP1BP61224 184 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 RAP1AP62834 184 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 OR5D14Q8NGL3 314 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 MFSD8Q8NHS3 518 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 SLC22A8Q8TCC7 542 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 SPACA9Q96E40 222 aaPredicted RBP11.87□□□□□ -0.51
VPS54-203ENST00000409558 S100A13Q99584 98 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 CST11Q9H112 138 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms