RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 MBD3L5A6NJ08 208 aaPredicted RBP12.28□□□□□ -0.44
GPNMB-203ENST00000409458 PAHP00439 452 aa12.28□□□□□ -0.44
GPNMB-203ENST00000409458 HLA-HP01893 362 aa12.28□□□□□ -0.44
GPNMB-203ENST00000409458 CD2P06729 351 aa12.28□□□□□ -0.44
GPNMB-203ENST00000409458 FSTP19883 344 aa12.28□□□□□ -0.44
GPNMB-203ENST00000409458 PPP3R1P63098 170 aa12.28□□□□□ -0.44
GPNMB-203ENST00000409458 ZNF45Q02386 682 aa12.28□□□□□ -0.44
GPNMB-203ENST00000409458 FOXF2Q12947 444 aa12.28□□□□□ -0.44
GPNMB-203ENST00000409458 ECH1Q13011 328 aa12.28□□□□□ -0.44
GPNMB-203ENST00000409458 GFOD2Q3B7J2 385 aa12.28□□□□□ -0.44
GPNMB-203ENST00000409458 SLC36A2Q495M3 483 aa12.28□□□□□ -0.44
GPNMB-203ENST00000409458 KRTCAP3Q53RY4 240 aa12.28□□□□□ -0.44
GPNMB-203ENST00000409458 PABPC1L2AQ5JQF8 200 aa12.28□□□□□ -0.44
GPNMB-203ENST00000409458 SPANXN2Q5MJ10 180 aa12.28□□□□□ -0.44
GPNMB-203ENST00000409458 OR2A2Q6IF42 318 aa12.28□□□□□ -0.44
GPNMB-203ENST00000409458 MZT2AQ6P582 158 aa12.28□□□□□ -0.44
GPNMB-203ENST00000409458 LUZP2Q86TE4 346 aa12.28□□□□□ -0.44
GPNMB-203ENST00000409458 COMMD2Q86X83 199 aa12.28□□□□□ -0.44
GPNMB-203ENST00000409458 MBD3L2Q8NHZ7 208 aaPredicted RBP12.28□□□□□ -0.44
GPNMB-203ENST00000409458 ZCCHC14Q8WYQ9 949 aaKnown RBP12.28□□□□□ -0.44
GPNMB-203ENST00000409458 WACQ9BTA9 647 aa12.28□□□□□ -0.44
GPNMB-203ENST00000409458 NOX3Q9HBY0 568 aa12.28□□□□□ -0.44
GPNMB-203ENST00000409458 GPR84Q9NQS5 396 aa12.28□□□□□ -0.44
GPNMB-203ENST00000409458 FAM215AQ9Y5M1 114 aa12.28□□□□□ -0.44
GPNMB-203ENST00000409458 PRRC2CQ9Y520 2896 aaKnown RBP12.27□□□□□ -0.45
GPNMB-203ENST00000409458 A0A1B0GVI7 797 aa12.27□□□□□ -0.45
GPNMB-203ENST00000409458 TBX1O43435 398 aa12.27□□□□□ -0.45
GPNMB-203ENST00000409458 IGLV3-1P01715 115 aa12.27□□□□□ -0.45
GPNMB-203ENST00000409458 SNRPBP14678 240 aaKnown RBP12.27□□□□□ -0.45
GPNMB-203ENST00000409458 IGFBP3P17936 291 aaPredicted RBP12.27□□□□□ -0.45
GPNMB-203ENST00000409458 CCL1P22362 96 aa12.27□□□□□ -0.45
GPNMB-203ENST00000409458 APEX1P27695 318 aaKnown RBP12.27□□□□□ -0.45
GPNMB-203ENST00000409458 PRR30Q53SZ7 412 aaPredicted RBP12.27□□□□□ -0.45
GPNMB-203ENST00000409458 HES5Q5TA89 166 aa12.27□□□□□ -0.45
GPNMB-203ENST00000409458 C16orf87Q6PH81 154 aa12.27□□□□□ -0.45
GPNMB-203ENST00000409458 RPRMLQ8N4K4 120 aa12.27□□□□□ -0.45
GPNMB-203ENST00000409458 OR1J2Q8NGS2 313 aa12.27□□□□□ -0.45
GPNMB-203ENST00000409458 OR6K3Q8NGY3 331 aa12.27□□□□□ -0.45
GPNMB-203ENST00000409458 FAM57AQ8TBR7 257 aa12.27□□□□□ -0.45
GPNMB-203ENST00000409458 TRMT10AQ8TBZ6 339 aaKnown RBP12.27□□□□□ -0.45
GPNMB-203ENST00000409458 FAM122AQ96E09 287 aa12.27□□□□□ -0.45
GPNMB-203ENST00000409458 LYZL4Q96KX0 146 aa12.27□□□□□ -0.45
GPNMB-203ENST00000409458 RNF121Q9H920 327 aa12.27□□□□□ -0.45
GPNMB-203ENST00000409458 ZNF275Q9NSD4 429 aaPredicted RBP12.27□□□□□ -0.45
GPNMB-203ENST00000409458 FOXJ3Q9UPW0 622 aa12.27□□□□□ -0.45
GPNMB-203ENST00000409458 V9GY05 133 aa12.27□□□□□ -0.45
GPNMB-203ENST00000409458 GTF3C1Q12789 2109 aa12.27□□□□□ -0.45
GPNMB-203ENST00000409458 ANXA2P2A6NMY6 339 aa12.26□□□□□ -0.45
GPNMB-203ENST00000409458 IFITM5A6NNB3 132 aa12.26□□□□□ -0.45
GPNMB-203ENST00000409458 AIPO00170 330 aa12.26□□□□□ -0.45
GPNMB-203ENST00000409458 WDR1O75083 606 aa12.26□□□□□ -0.45
GPNMB-203ENST00000409458 APOC1P02654 83 aa12.26□□□□□ -0.45
GPNMB-203ENST00000409458 GABRA1P14867 456 aa12.26□□□□□ -0.45
GPNMB-203ENST00000409458 IGHV1-2P23083 117 aa12.26□□□□□ -0.45
GPNMB-203ENST00000409458 CD40LGP29965 261 aa12.26□□□□□ -0.45
GPNMB-203ENST00000409458 PPP5CP53041 499 aa12.26□□□□□ -0.45
GPNMB-203ENST00000409458 SNAI3Q3KNW1 292 aa12.26□□□□□ -0.45
GPNMB-203ENST00000409458 HIKESHIQ53FT3 197 aa12.26□□□□□ -0.45
GPNMB-203ENST00000409458 C1orf185Q5T7R7 199 aa12.26□□□□□ -0.45
GPNMB-203ENST00000409458 ANKRD16Q6P6B7 361 aa12.26□□□□□ -0.45
GPNMB-203ENST00000409458 DRAM2Q6UX65 266 aa12.26□□□□□ -0.45
GPNMB-203ENST00000409458 CPEB3Q8NE35 698 aaKnown RBP12.26□□□□□ -0.45
GPNMB-203ENST00000409458 OR5H6Q8NGV6 325 aa12.26□□□□□ -0.45
GPNMB-203ENST00000409458 BCL2L2Q92843 193 aaPredicted RBP12.26□□□□□ -0.45
GPNMB-203ENST00000409458 ADAT3Q96EY9 351 aaPredicted RBP12.26□□□□□ -0.45
GPNMB-203ENST00000409458 FAM71F1Q96KD3 344 aaPredicted RBP12.26□□□□□ -0.45
GPNMB-203ENST00000409458 PALMDQ9NP74 551 aa12.26□□□□□ -0.45
GPNMB-203ENST00000409458 TUBD1Q9UJT1 453 aa12.26□□□□□ -0.45
GPNMB-203ENST00000409458 SVILO95425 2214 aa12.26□□□□□ -0.45
GPNMB-203ENST00000409458 A6NIN4 97 aa12.26□□□□□ -0.45
GPNMB-203ENST00000409458 FIGNL2A6NMB9 653 aa12.26□□□□□ -0.45
GPNMB-203ENST00000409458 TNFSF13O75888 250 aa12.26□□□□□ -0.45
GPNMB-203ENST00000409458 TOXO94900 526 aa12.26□□□□□ -0.45
GPNMB-203ENST00000409458 CD79AP11912 226 aa12.26□□□□□ -0.45
GPNMB-203ENST00000409458 TPTEP56180 551 aa12.26□□□□□ -0.45
GPNMB-203ENST00000409458 IFITM3Q01628 133 aa12.26□□□□□ -0.45
GPNMB-203ENST00000409458 MADCAM1Q13477 382 aa12.26□□□□□ -0.45
GPNMB-203ENST00000409458 SF3B4Q15427 424 aaKnown RBP eCLIP12.26□□□□□ -0.45
GPNMB-203ENST00000409458 ZNF79Q15937 498 aa12.26□□□□□ -0.45
GPNMB-203ENST00000409458 CNIH2Q6PI25 160 aa12.26□□□□□ -0.45
GPNMB-203ENST00000409458 OR51A2Q8NGJ7 313 aa12.26□□□□□ -0.45
GPNMB-203ENST00000409458 LGALS14Q8TCE9 139 aa12.26□□□□□ -0.45
GPNMB-203ENST00000409458 FGGYQ96C11 551 aa12.26□□□□□ -0.45
GPNMB-203ENST00000409458 DIRAS2Q96HU8 199 aa12.26□□□□□ -0.45
GPNMB-203ENST00000409458 SDHCQ99643 169 aaPredicted RBP12.26□□□□□ -0.45
GPNMB-203ENST00000409458 SLX1AQ9BQ83 275 aa12.26□□□□□ -0.45
GPNMB-203ENST00000409458 ABRACLQ9P1F3 81 aa12.26□□□□□ -0.45
GPNMB-203ENST00000409458 CKLFQ9UBR5 152 aa12.26□□□□□ -0.45
GPNMB-203ENST00000409458 A0A0U1RQV5 110 aa12.25□□□□□ -0.45
GPNMB-203ENST00000409458 TTLL8A6PVC2 850 aa12.25□□□□□ -0.45
GPNMB-203ENST00000409458 SLC19A2O60779 497 aa12.25□□□□□ -0.45
GPNMB-203ENST00000409458 EIF4EP06730 217 aaKnown RBP12.25□□□□□ -0.45
GPNMB-203ENST00000409458 ELK1P19419 428 aa12.25□□□□□ -0.45
GPNMB-203ENST00000409458 PTGER4P35408 488 aa12.25□□□□□ -0.45
GPNMB-203ENST00000409458 PLA2G5P39877 138 aa12.25□□□□□ -0.45
GPNMB-203ENST00000409458 PER3P56645 1201 aa12.25□□□□□ -0.45
GPNMB-203ENST00000409458 CLDN12P56749 244 aa12.25□□□□□ -0.45
GPNMB-203ENST00000409458 TBRG1Q3YBR2 411 aa12.25□□□□□ -0.45
GPNMB-203ENST00000409458 C3P1Q6ZMU1 363 aa12.25□□□□□ -0.45
GPNMB-203ENST00000409458 Q6ZT83 130 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms