RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 POU2F2P09086 479 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 OPN1MW2P0DN77 364 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 OPN1MW3P0DN78 364 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 GALNSP34059 522 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 CCR6P51684 374 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 MLF2Q15773 248 aaPredicted RBP5.54□□□□□ -1.52
SCN1A-203ENST00000409050 SSX1Q16384 188 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 NLRC3Q7RTR2 1065 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 KLHDC9Q8NEP7 349 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 CA14Q9ULX7 337 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 COA3Q9Y2R0 106 aaPredicted RBP5.54□□□□□ -1.52
SCN1A-203ENST00000409050 TCHHQ07283 1943 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 A0A0A6YYJ9 748 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 NCBP2LA6PVI3 153 aaKnown RBP5.54□□□□□ -1.52
SCN1A-203ENST00000409050 SLC31A2O15432 143 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 HPP00738 406 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 CD1CP29017 333 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 CSNK1EP49674 416 aaKnown RBP5.54□□□□□ -1.52
SCN1A-203ENST00000409050 HMGA2P52926 109 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 ERVFC1P60507 584 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 EIF3IQ13347 325 aaKnown RBP5.54□□□□□ -1.52
SCN1A-203ENST00000409050 OR8B8Q15620 311 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 CTF1Q16619 201 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 TMEM183BQ1AE95 376 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 PYCR3Q53H96 274 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 LAIR1Q6GTX8 287 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 RSPO2Q6UXX9 243 aaPredicted RBP5.54□□□□□ -1.52
SCN1A-203ENST00000409050 TMEM182Q6ZP80 229 aaPredicted RBP5.54□□□□□ -1.52
SCN1A-203ENST00000409050 SSX7Q7RTT5 188 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 THNSL2Q86YJ6 484 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 OR1L4Q8NGR5 311 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 OR51F2Q8NH61 342 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 WDR34Q96EX3 536 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 Q96M85 177 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 TXNDC17Q9BRA2 123 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 PSENENQ9NZ42 101 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 SLAMF8Q9P0V8 285 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 EXOGQ9Y2C4 368 aaKnown RBP5.54□□□□□ -1.52
SCN1A-203ENST00000409050 TMEM30CPA0ZSE6 113 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 LRRC3CA6NJW4 275 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 EPXP11678 715 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 ALOX5APP20292 161 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 AGFG1P52594 562 aaKnown RBP5.54□□□□□ -1.52
SCN1A-203ENST00000409050 EXOSC2Q13868 293 aaKnown RBP5.54□□□□□ -1.52
SCN1A-203ENST00000409050 BEX5Q5H9J7 111 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 JMJD6Q6NYC1 403 aaPredicted RBP5.54□□□□□ -1.52
SCN1A-203ENST00000409050 TEX261Q6UWH6 196 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 C6orf15Q6UXA7 325 aaPredicted RBP5.54□□□□□ -1.52
SCN1A-203ENST00000409050 OSR2Q8N2R0 312 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 EIF4E3Q8N5X7 224 aaKnown RBP5.54□□□□□ -1.52
SCN1A-203ENST00000409050 BCORP1Q8N888 145 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 OR52N4Q8NGI2 321 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 ZC3HAV1LQ96H79 300 aaKnown RBP5.54□□□□□ -1.52
SCN1A-203ENST00000409050 CCDC74BQ96LY2 380 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 NPAS1Q99742 590 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 C20orf27Q9GZN8 174 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 TAS2R4Q9NYW5 299 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 U3KQ87 197 aa5.54□□□□□ -1.52
SCN1A-203ENST00000409050 FGF2P09038 288 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 ANKRD34CP0C6C1 535 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 PRR35P0CG20 571 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 TNFRSF1AP19438 455 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 FUT3P21217 361 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 CLN3Q13286 438 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 TESK1Q15569 626 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 PRSS42Q7Z5A4 293 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 OR4F5Q8NH21 305 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 ZNF707Q96C28 371 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-203ENST00000409050 OR4F4Q96R69 305 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 OR8B4Q96RC9 309 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 ATP5SQ99766 215 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 PDFQ9HBH1 243 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 MYEF2Q9P2K5 600 aaKnown RBP5.53□□□□□ -1.52
SCN1A-203ENST00000409050 MMP17Q9ULZ9 603 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 NUMBLQ9Y6R0 609 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 MYH2Q9UKX2 1941 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 TMEM218A2RU14 115 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 PPP6CO00743 305 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 RRP8O43159 456 aaKnown RBP5.53□□□□□ -1.52
SCN1A-203ENST00000409050 PLPP2O43688 288 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 CA11O75493 328 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 CBR3O75828 277 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 CD1AP06126 327 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 RPA2P15927 270 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 UBE2IP63279 158 aaKnown RBP5.53□□□□□ -1.52
SCN1A-203ENST00000409050 HOXC5Q00444 222 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 ZNF77Q15935 545 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 ACKR1Q16570 336 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 NKAIN1Q4KMZ8 207 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 TBPL2Q6SJ96 375 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 C12orf76Q8N812 135 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-203ENST00000409050 ZBTB34Q8NCN2 500 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 RTN4IP1Q8WWV3 396 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-203ENST00000409050 RAB24Q969Q5 203 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 PRRX2Q99811 253 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 SEC11CQ9BY50 192 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 PBOV1Q9GZY1 135 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 GLRX2Q9NS18 164 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 MYH11P35749 1972 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 M0R082 166 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 89.4 ms