RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 ACER3Q9NUN7 267 aa10.27□□□□□ -0.77
TTC28-201ENST00000397906 SDCBPO00560 298 aaPredicted RBP10.26□□□□□ -0.77
TTC28-201ENST00000397906 UBE2KP61086 200 aa10.26□□□□□ -0.77
TTC28-201ENST00000397906 ELFN2Q5R3F8 820 aa10.26□□□□□ -0.77
TTC28-201ENST00000397906 NCCRP1Q6ZVX7 275 aaPredicted RBP10.26□□□□□ -0.77
TTC28-201ENST00000397906 OR4D9Q8NGE8 314 aa10.26□□□□□ -0.77
TTC28-201ENST00000397906 ZNF707Q96C28 371 aaPredicted RBP10.26□□□□□ -0.77
TTC28-201ENST00000397906 LINC00615Q96LM1 132 aaPredicted RBP10.26□□□□□ -0.77
TTC28-201ENST00000397906 OSGIN2Q9Y236 505 aa10.26□□□□□ -0.77
TTC28-201ENST00000397906 A0A0A6YYD5 115 aa10.26□□□□□ -0.77
TTC28-201ENST00000397906 K7EQS6 105 aa10.26□□□□□ -0.77
TTC28-201ENST00000397906 HYAL3O43820 417 aaPredicted RBP10.26□□□□□ -0.77
TTC28-201ENST00000397906 SMIM21Q3B7S5 101 aa10.26□□□□□ -0.77
TTC28-201ENST00000397906 PCNPQ8WW12 178 aaKnown RBP10.26□□□□□ -0.77
TTC28-201ENST00000397906 NDUFB3O43676 98 aa10.26□□□□□ -0.77
TTC28-201ENST00000397906 ACHEP22303 614 aa10.26□□□□□ -0.77
TTC28-201ENST00000397906 DTYMKP23919 212 aa10.26□□□□□ -0.77
TTC28-201ENST00000397906 FAM74A1Q5RGS3 127 aa10.26□□□□□ -0.77
TTC28-201ENST00000397906 OR2AE1Q8NHA4 323 aa10.26□□□□□ -0.77
TTC28-201ENST00000397906 OR2A14Q96R47 310 aa10.26□□□□□ -0.77
TTC28-201ENST00000397906 COMMD5Q9GZQ3 224 aa10.26□□□□□ -0.77
TTC28-201ENST00000397906 RGPD4Q7Z3J3 1758 aa10.26□□□□□ -0.77
TTC28-201ENST00000397906 PPT1P50897 306 aa10.26□□□□□ -0.77
TTC28-201ENST00000397906 CPNE5Q9HCH3 593 aa10.26□□□□□ -0.77
TTC28-201ENST00000397906 NUDT19A8MXV4 375 aa10.26□□□□□ -0.77
TTC28-201ENST00000397906 CSN1S1P47710 185 aa10.26□□□□□ -0.77
TTC28-201ENST00000397906 RTP5Q14D33 572 aa10.26□□□□□ -0.77
TTC28-201ENST00000397906 KCNE3Q9Y6H6 103 aa10.26□□□□□ -0.77
TTC28-201ENST00000397906 TEX51A0A1B0GUA7 166 aa10.26□□□□□ -0.77
TTC28-201ENST00000397906 DEFB108AA8MXU0 73 aa10.26□□□□□ -0.77
TTC28-201ENST00000397906 SBK2P0C263 348 aa10.26□□□□□ -0.77
TTC28-201ENST00000397906 UBE2G1P62253 170 aa10.26□□□□□ -0.77
TTC28-201ENST00000397906 RPS27AP62979 156 aaKnown RBP10.26□□□□□ -0.77
TTC28-201ENST00000397906 UBA52P62987 128 aaKnown RBP10.26□□□□□ -0.77
TTC28-201ENST00000397906 HTRA4P83105 476 aaPredicted RBP10.26□□□□□ -0.77
TTC28-201ENST00000397906 SIGLEC14Q08ET2 396 aa10.26□□□□□ -0.77
TTC28-201ENST00000397906 HFEQ30201 348 aa10.26□□□□□ -0.77
TTC28-201ENST00000397906 EMC4Q5J8M3 183 aa10.26□□□□□ -0.77
TTC28-201ENST00000397906 ACSM5Q6NUN0 579 aa10.26□□□□□ -0.77
TTC28-201ENST00000397906 UBALD1Q8TB05 177 aa10.26□□□□□ -0.77
TTC28-201ENST00000397906 KTI12Q96EK9 354 aaPredicted RBP10.26□□□□□ -0.77
TTC28-201ENST00000397906 PRRX2Q99811 253 aa10.26□□□□□ -0.77
TTC28-201ENST00000397906 HOXD12P35452 270 aa10.26□□□□□ -0.77
TTC28-201ENST00000397906 CDX4O14627 284 aaPredicted RBP10.26□□□□□ -0.77
TTC28-201ENST00000397906 ATXN7O15265 892 aaPredicted RBP10.26□□□□□ -0.77
TTC28-201ENST00000397906 FAHP16930 419 aa10.26□□□□□ -0.77
TTC28-201ENST00000397906 APEX1P27695 318 aaKnown RBP10.26□□□□□ -0.77
TTC28-201ENST00000397906 SPANXN5Q5MJ07 72 aa10.26□□□□□ -0.77
TTC28-201ENST00000397906 ST3GAL6Q9Y274 331 aa10.26□□□□□ -0.77
TTC28-201ENST00000397906 LSAMPQ13449 338 aa10.26□□□□□ -0.77
TTC28-201ENST00000397906 B3GALT5Q9Y2C3 310 aa10.26□□□□□ -0.77
TTC28-201ENST00000397906 TRA2AQ13595 282 aaKnown RBP eCLIP10.25□□□□□ -0.77
TTC28-201ENST00000397906 DBX2Q6ZNG2 339 aa10.25□□□□□ -0.77
TTC28-201ENST00000397906 NRARPQ7Z6K4 114 aa10.25□□□□□ -0.77
TTC28-201ENST00000397906 OR52H1Q8NGJ2 320 aa10.25□□□□□ -0.77
TTC28-201ENST00000397906 ORAI1Q96D31 301 aa10.25□□□□□ -0.77
TTC28-201ENST00000397906 CNRIP1Q96F85 164 aaPredicted RBP10.25□□□□□ -0.77
TTC28-201ENST00000397906 FAM212BQ9NTI7 297 aaPredicted RBP10.25□□□□□ -0.77
TTC28-201ENST00000397906 GPANK1O95872 356 aa10.25□□□□□ -0.77
TTC28-201ENST00000397906 YBX1P67809 324 aaKnown RBP10.25□□□□□ -0.77
TTC28-201ENST00000397906 ACVR1Q04771 509 aa10.25□□□□□ -0.77
TTC28-201ENST00000397906 B3GNTL1Q67FW5 361 aaPredicted RBP10.25□□□□□ -0.77
TTC28-201ENST00000397906 LRFN5Q96NI6 719 aa10.25□□□□□ -0.77
TTC28-201ENST00000397906 TXNIPQ9H3M7 391 aa10.25□□□□□ -0.77
TTC28-201ENST00000397906 SERTM2A0A1B0GWG4 89 aa10.25□□□□□ -0.77
TTC28-201ENST00000397906 GOSR1O95249 250 aa10.25□□□□□ -0.77
TTC28-201ENST00000397906 PSMB1P20618 241 aaKnown RBP10.25□□□□□ -0.77
TTC28-201ENST00000397906 PAQR6Q6TCH4 344 aa10.25□□□□□ -0.77
TTC28-201ENST00000397906 KIRREL2Q6UWL6 708 aa10.25□□□□□ -0.77
TTC28-201ENST00000397906 ZNF620Q6ZNG0 422 aa10.25□□□□□ -0.77
TTC28-201ENST00000397906 PRSS35Q8N3Z0 413 aa10.25□□□□□ -0.77
TTC28-201ENST00000397906 FAM109AQ8N4B1 249 aa10.25□□□□□ -0.77
TTC28-201ENST00000397906 GPR78Q96P69 363 aa10.25□□□□□ -0.77
TTC28-201ENST00000397906 USP54Q70EL1 1684 aa10.25□□□□□ -0.77
TTC28-201ENST00000397906 SIX6O95475 246 aa10.25□□□□□ -0.77
TTC28-201ENST00000397906 RPL35P42766 123 aaKnown RBP10.25□□□□□ -0.77
TTC28-201ENST00000397906 C17orf78Q8N4C9 275 aa10.25□□□□□ -0.77
TTC28-201ENST00000397906 TRGV10A0A0A0MS01 117 aa10.25□□□□□ -0.77
TTC28-201ENST00000397906 TMEM235A6NFC5 223 aa10.25□□□□□ -0.77
TTC28-201ENST00000397906 FABP1P07148 127 aa10.25□□□□□ -0.77
TTC28-201ENST00000397906 TCTN1Q2MV58 587 aa10.25□□□□□ -0.77
TTC28-201ENST00000397906 OLIG1Q8TAK6 271 aa10.25□□□□□ -0.77
TTC28-201ENST00000397906 FOXB1Q99853 325 aa10.25□□□□□ -0.77
TTC28-201ENST00000397906 HINT3Q9NQE9 182 aaKnown RBP10.25□□□□□ -0.77
TTC28-201ENST00000397906 HOXB3P14651 431 aaPredicted RBP10.25□□□□□ -0.77
TTC28-201ENST00000397906 DOC2BQ14184 412 aa10.25□□□□□ -0.77
TTC28-201ENST00000397906 RNF167Q9H6Y7 350 aa10.25□□□□□ -0.77
TTC28-201ENST00000397906 ISYNA1Q9NPH2 558 aa10.25□□□□□ -0.77
TTC28-201ENST00000397906 SLC22A13Q9Y226 551 aa10.25□□□□□ -0.77
TTC28-201ENST00000397906 IAPPP10997 89 aa10.25□□□□□ -0.77
TTC28-201ENST00000397906 SPRED1Q7Z699 444 aa10.25□□□□□ -0.77
TTC28-201ENST00000397906 OCEL1Q9H607 264 aa10.25□□□□□ -0.77
TTC28-201ENST00000397906 SLC25A37Q9NYZ2 338 aa10.25□□□□□ -0.77
TTC28-201ENST00000397906 KCTD12Q96CX2 325 aaKnown RBP10.25□□□□□ -0.77
TTC28-201ENST00000397906 SEC22CQ9BRL7 303 aa10.25□□□□□ -0.77
TTC28-201ENST00000397906 SLA2Q9H6Q3 261 aa10.25□□□□□ -0.77
TTC28-201ENST00000397906 A0A0B4J203 849 aa10.25□□□□□ -0.77
TTC28-201ENST00000397906 A0A1W2PRD5 423 aa10.25□□□□□ -0.77
TTC28-201ENST00000397906 A0A1W2PRF3 423 aa10.25□□□□□ -0.77
TTC28-201ENST00000397906 A0A1W2PRM7 423 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms