RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 KNG1P01042 644 aa13.48□□□□□ -0.25
CUX2-202ENST00000397643 AQP2P41181 271 aa13.48□□□□□ -0.25
CUX2-202ENST00000397643 RAG2P55895 527 aa13.48□□□□□ -0.25
CUX2-202ENST00000397643 KRTAP10-3P60369 221 aa13.48□□□□□ -0.25
CUX2-202ENST00000397643 SLC34A1Q06495 639 aa13.48□□□□□ -0.25
CUX2-202ENST00000397643 ESCO2Q56NI9 601 aa13.48□□□□□ -0.25
CUX2-202ENST00000397643 FAM27BQ5VT28 67 aa13.48□□□□□ -0.25
CUX2-202ENST00000397643 FAHD1Q6P587 224 aa13.48□□□□□ -0.25
CUX2-202ENST00000397643 RASSF6Q6ZTQ3 369 aa13.48□□□□□ -0.25
CUX2-202ENST00000397643 EME1Q96AY2 570 aa13.48□□□□□ -0.25
CUX2-202ENST00000397643 CIB1Q99828 191 aa13.48□□□□□ -0.25
CUX2-202ENST00000397643 NIPSNAP1Q9BPW8 284 aa13.48□□□□□ -0.25
CUX2-202ENST00000397643 RBM4BQ9BQ04 359 aaKnown RBP13.48□□□□□ -0.25
CUX2-202ENST00000397643 KCNN2Q9H2S1 579 aa13.48□□□□□ -0.25
CUX2-202ENST00000397643 IL20RAQ9UHF4 553 aa13.48□□□□□ -0.25
CUX2-202ENST00000397643 SIGLEC7Q9Y286 467 aa13.48□□□□□ -0.25
CUX2-202ENST00000397643 LRCH1Q9Y2L9 728 aa13.48□□□□□ -0.25
CUX2-202ENST00000397643 IGHV2-70DA0A0C4DH43 119 aa13.47□□□□□ -0.25
CUX2-202ENST00000397643 TIMM8AO60220 97 aaPredicted RBP13.47□□□□□ -0.25
CUX2-202ENST00000397643 NDUFB2O95178 105 aa13.47□□□□□ -0.25
CUX2-202ENST00000397643 WNT2P09544 360 aa13.47□□□□□ -0.25
CUX2-202ENST00000397643 TSPAN19P0C672 248 aa13.47□□□□□ -0.25
CUX2-202ENST00000397643 MDH2P40926 338 aaKnown RBP13.47□□□□□ -0.25
CUX2-202ENST00000397643 DAPP51397 102 aa13.47□□□□□ -0.25
CUX2-202ENST00000397643 DAP3P51398 398 aaKnown RBP13.47□□□□□ -0.25
CUX2-202ENST00000397643 SGCAQ16586 387 aa13.47□□□□□ -0.25
CUX2-202ENST00000397643 DEFB112Q30KQ8 113 aa13.47□□□□□ -0.25
CUX2-202ENST00000397643 ALG10Q5BKT4 473 aa13.47□□□□□ -0.25
CUX2-202ENST00000397643 RPL13AP3Q6NVV1 102 aa13.47□□□□□ -0.25
CUX2-202ENST00000397643 SLC25A47Q6Q0C1 308 aa13.47□□□□□ -0.25
CUX2-202ENST00000397643 SMARCD3Q6STE5 483 aa13.47□□□□□ -0.25
CUX2-202ENST00000397643 C17orf107Q6ZR85 190 aa13.47□□□□□ -0.25
CUX2-202ENST00000397643 ZBTB49Q6ZSB9 765 aa13.47□□□□□ -0.25
CUX2-202ENST00000397643 MOSPD2Q8NHP6 518 aa13.47□□□□□ -0.25
CUX2-202ENST00000397643 FANK1Q8TC84 345 aa13.47□□□□□ -0.25
CUX2-202ENST00000397643 ITLN1Q8WWA0 313 aa13.47□□□□□ -0.25
CUX2-202ENST00000397643 NSMAFQ92636 917 aa13.47□□□□□ -0.25
CUX2-202ENST00000397643 C4orf45Q96LM5 186 aa13.47□□□□□ -0.25
CUX2-202ENST00000397643 PAPOLBQ9NRJ5 636 aaKnown RBP13.47□□□□□ -0.25
CUX2-202ENST00000397643 INIPQ9NRY2 104 aa13.47□□□□□ -0.25
CUX2-202ENST00000397643 NKX1-2Q9UD57 310 aaPredicted RBP13.47□□□□□ -0.25
CUX2-202ENST00000397643 NPIPB13A6NJU9 1138 aa13.46□□□□□ -0.25
CUX2-202ENST00000397643 SRRM5B3KS81 715 aa13.46□□□□□ -0.25
CUX2-202ENST00000397643 NPIPB4C9JG80 1138 aa13.46□□□□□ -0.25
CUX2-202ENST00000397643 TMEM178BH3BS89 294 aa13.46□□□□□ -0.25
CUX2-202ENST00000397643 NDUFA7O95182 113 aa13.46□□□□□ -0.25
CUX2-202ENST00000397643 ATP6V1G2O95670 118 aa13.46□□□□□ -0.25
CUX2-202ENST00000397643 TNFRSF1AP19438 455 aa13.46□□□□□ -0.25
CUX2-202ENST00000397643 KITLGP21583 273 aa13.46□□□□□ -0.25
CUX2-202ENST00000397643 LAP3P28838 519 aa13.46□□□□□ -0.25
CUX2-202ENST00000397643 SLC6A6P31641 620 aa13.46□□□□□ -0.25
CUX2-202ENST00000397643 RPL4P36578 427 aaKnown RBP13.46□□□□□ -0.25
CUX2-202ENST00000397643 MMP16P51512 607 aa13.46□□□□□ -0.25
CUX2-202ENST00000397643 FHL1Q13642 323 aa13.46□□□□□ -0.25
CUX2-202ENST00000397643 RFX4Q33E94 735 aa13.46□□□□□ -0.25
CUX2-202ENST00000397643 ZNF362Q5T0B9 420 aaPredicted RBP13.46□□□□□ -0.25
CUX2-202ENST00000397643 OLFML2AQ68BL7 652 aa13.46□□□□□ -0.25
CUX2-202ENST00000397643 LRRN1Q6UXK5 716 aa13.46□□□□□ -0.25
CUX2-202ENST00000397643 BRD3OSQ6XYD6 125 aa13.46□□□□□ -0.25
CUX2-202ENST00000397643 ZNF620Q6ZNG0 422 aa13.46□□□□□ -0.25
CUX2-202ENST00000397643 HDDC2Q7Z4H3 204 aa13.46□□□□□ -0.25
CUX2-202ENST00000397643 CBR4Q8N4T8 237 aa13.46□□□□□ -0.25
CUX2-202ENST00000397643 CLDN22Q8N7P3 220 aa13.46□□□□□ -0.25
CUX2-202ENST00000397643 OR2Z1Q8NG97 314 aa13.46□□□□□ -0.25
CUX2-202ENST00000397643 OR4F5Q8NH21 305 aa13.46□□□□□ -0.25
CUX2-202ENST00000397643 SSBP3Q9BWW4 388 aaPredicted RBP13.46□□□□□ -0.25
CUX2-202ENST00000397643 ELOVL3Q9HB03 270 aa13.46□□□□□ -0.25
CUX2-202ENST00000397643 BEX1Q9HBH7 125 aa13.46□□□□□ -0.25
CUX2-202ENST00000397643 C8orf4Q9NR00 106 aa13.46□□□□□ -0.25
CUX2-202ENST00000397643 KRT84Q9NSB2 600 aa13.46□□□□□ -0.25
CUX2-202ENST00000397643 USE1Q9NZ43 259 aa13.46□□□□□ -0.25
CUX2-202ENST00000397643 C1RLQ9NZP8 487 aa13.46□□□□□ -0.25
CUX2-202ENST00000397643 IL19Q9UHD0 177 aa13.46□□□□□ -0.25
CUX2-202ENST00000397643 ENOPH1Q9UHY7 261 aa13.46□□□□□ -0.25
CUX2-202ENST00000397643 PPP1R3CQ9UQK1 317 aa13.46□□□□□ -0.25
CUX2-202ENST00000397643 ZNF281Q9Y2X9 895 aa13.46□□□□□ -0.25
CUX2-202ENST00000397643 ORC6Q9Y5N6 252 aa13.46□□□□□ -0.25
CUX2-202ENST00000397643 CDH10Q9Y6N8 788 aa13.46□□□□□ -0.25
CUX2-202ENST00000397643 DOCK11Q5JSL3 2073 aa13.46□□□□□ -0.26
CUX2-202ENST00000397643 EI24O14681 340 aa13.45□□□□□ -0.26
CUX2-202ENST00000397643 CASQ2O14958 399 aaPredicted RBP13.45□□□□□ -0.26
CUX2-202ENST00000397643 CST2P09228 141 aa13.45□□□□□ -0.26
CUX2-202ENST00000397643 OSMP13725 252 aa13.45□□□□□ -0.26
CUX2-202ENST00000397643 TNFSF4P23510 183 aa13.45□□□□□ -0.26
CUX2-202ENST00000397643 ALDH3A2P51648 485 aa13.45□□□□□ -0.26
CUX2-202ENST00000397643 CTXN1P60606 82 aa13.45□□□□□ -0.26
CUX2-202ENST00000397643 ENDOGQ14249 297 aaKnown RBP13.45□□□□□ -0.26
CUX2-202ENST00000397643 KDM4DQ6B0I6 523 aa13.45□□□□□ -0.26
CUX2-202ENST00000397643 BRICD5Q6PL45 260 aa13.45□□□□□ -0.26
CUX2-202ENST00000397643 FIP1L1Q6UN15 594 aaKnown RBP13.45□□□□□ -0.26
CUX2-202ENST00000397643 DPY19L2P2Q6ZN68 376 aa13.45□□□□□ -0.26
CUX2-202ENST00000397643 FOXL2NBQ6ZUU3 175 aa13.45□□□□□ -0.26
CUX2-202ENST00000397643 MUC20Q8N307 709 aaPredicted RBP13.45□□□□□ -0.26
CUX2-202ENST00000397643 OR52L1Q8NGH7 329 aa13.45□□□□□ -0.26
CUX2-202ENST00000397643 OR10S1Q8NGN2 331 aa13.45□□□□□ -0.26
CUX2-202ENST00000397643 OR2V2Q96R30 315 aa13.45□□□□□ -0.26
CUX2-202ENST00000397643 OR52D1Q9H346 318 aa13.45□□□□□ -0.26
CUX2-202ENST00000397643 TIMM10BQ9Y5J6 103 aa13.45□□□□□ -0.26
CUX2-202ENST00000397643 CLPSL1A2RUU4 121 aa13.44□□□□□ -0.26
CUX2-202ENST00000397643 H3BN98 237 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms