RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 A0A1B0GVG6 124 aa11.63□□□□□ -0.55
CCDC88C-204ENST00000389857 ABLIM3O94929 683 aa11.63□□□□□ -0.55
CCDC88C-204ENST00000389857 C1QBP02746 253 aa11.63□□□□□ -0.55
CCDC88C-204ENST00000389857 PSMB6P28072 239 aa11.63□□□□□ -0.55
CCDC88C-204ENST00000389857 POLR2IP36954 125 aaKnown RBP11.63□□□□□ -0.55
CCDC88C-204ENST00000389857 NKAIN4Q8IVV8 208 aa11.63□□□□□ -0.55
CCDC88C-204ENST00000389857 ICOSLGO75144 302 aa11.63□□□□□ -0.55
CCDC88C-204ENST00000389857 SULT1C4O75897 302 aa11.63□□□□□ -0.55
CCDC88C-204ENST00000389857 RPL12P30050 165 aaKnown RBP11.63□□□□□ -0.55
CCDC88C-204ENST00000389857 CCR5P51681 352 aa11.63□□□□□ -0.55
CCDC88C-204ENST00000389857 DPTQ07507 201 aa11.63□□□□□ -0.55
CCDC88C-204ENST00000389857 TRMT12Q53H54 448 aaKnown RBP11.63□□□□□ -0.55
CCDC88C-204ENST00000389857 GTF2H5Q6ZYL4 71 aa11.63□□□□□ -0.55
CCDC88C-204ENST00000389857 ERGIC1Q969X5 290 aa11.63□□□□□ -0.55
CCDC88C-204ENST00000389857 MED30Q96HR3 178 aa11.63□□□□□ -0.55
CCDC88C-204ENST00000389857 POM121L2Q96KW2 1035 aa11.63□□□□□ -0.55
CCDC88C-204ENST00000389857 ARHGDIGQ99819 225 aa11.63□□□□□ -0.55
CCDC88C-204ENST00000389857 TUBB1Q9H4B7 451 aa11.63□□□□□ -0.55
CCDC88C-204ENST00000389857 IAPPP10997 89 aa11.63□□□□□ -0.55
CCDC88C-204ENST00000389857 RANP62826 216 aaKnown RBP11.63□□□□□ -0.55
CCDC88C-204ENST00000389857 GABARAPL1Q9H0R8 117 aa11.63□□□□□ -0.55
CCDC88C-204ENST00000389857 RAB18Q9NP72 206 aa11.63□□□□□ -0.55
CCDC88C-204ENST00000389857 IDSB3KWA1 339 aa11.63□□□□□ -0.55
CCDC88C-204ENST00000389857 ZNF195O14628 629 aa11.63□□□□□ -0.55
CCDC88C-204ENST00000389857 ASAH1Q13510 395 aa11.63□□□□□ -0.55
CCDC88C-204ENST00000389857 SPRED3Q2MJR0 410 aa11.63□□□□□ -0.55
CCDC88C-204ENST00000389857 CTU2Q2VPK5 515 aaKnown RBP11.63□□□□□ -0.55
CCDC88C-204ENST00000389857 LRRC10Q5BKY1 277 aa11.63□□□□□ -0.55
CCDC88C-204ENST00000389857 LCN15Q6UWW0 184 aa11.63□□□□□ -0.55
CCDC88C-204ENST00000389857 RHOUQ7L0Q8 258 aa11.63□□□□□ -0.55
CCDC88C-204ENST00000389857 ZIC5Q96T25 663 aa11.63□□□□□ -0.55
CCDC88C-204ENST00000389857 C20orf27Q9GZN8 174 aa11.63□□□□□ -0.55
CCDC88C-204ENST00000389857 PBOV1Q9GZY1 135 aa11.63□□□□□ -0.55
CCDC88C-204ENST00000389857 FBXO8Q9NRD0 319 aa11.63□□□□□ -0.55
CCDC88C-204ENST00000389857 FAM157BP0CG42 384 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 LIPAP38571 399 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 SHBQ15464 509 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 ACKR1Q16570 336 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 TMEM123Q8N131 208 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 GPR32P1Q8NGA4 272 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 SRRQ9GZT4 340 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 HES4Q9HCC6 221 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 ZNF629Q9UEG4 869 aaPredicted RBP11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 CHST2Q9Y4C5 530 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 PRSS37A4D1T9 235 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 PIGAP37287 484 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 PPICP45877 212 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 CNN1P51911 297 aaKnown RBP11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 ZNF77Q15935 545 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 LRRC26Q2I0M4 334 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 RGS7BPQ6MZT1 257 aaPredicted RBP11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 ADAM5Q6NVV9 412 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 CORO6Q6QEF8 472 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 BAHD1Q8TBE0 780 aaPredicted RBP11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 C4AP0C0L4 1744 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 TRGV10A0A0A0MS01 117 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 ZNF785A8K8V0 405 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 PXDC1Q5TGL8 231 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 B3GNT9Q6UX72 402 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 LHX4Q969G2 390 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 AAMDCQ9H7C9 122 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 MBNL1Q9NR56 388 aaKnown RBP11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 TBC1D29Q9UFV1 150 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 SHROOM3Q8TF72 1996 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 A0A096LPE4 126 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 A0A1W2PPZ6 126 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 SLC22A20A6NK97 555 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 ZBTB42B2RXF5 422 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 LRP3O75074 770 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 GOSR1O95249 250 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 SSBP1Q04837 148 aaKnown RBP11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 PDZD11Q5EBL8 140 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 KLHDC1Q8N7A1 406 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 A0A087WV62 115 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 OR2M5A3KFT3 312 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 LINC01553A4QN01 128 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 DEFB109BQ30KR1 87 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 PARM1Q6UWI2 310 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 DEFB108BQ8NET1 73 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 PELI1Q96FA3 418 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 MS4A4AQ96JQ5 239 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 VPS25Q9BRG1 176 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 MMP17Q9ULZ9 603 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 OR2J2O76002 312 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 SPPL3Q8TCT6 385 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 MOB3AQ96BX8 217 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 MVB12AQ96EY5 273 aa11.62□□□□□ -0.55
CCDC88C-204ENST00000389857 RBM45Q8IUH3 476 aaKnown RBP11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 FAM26EQ8N5C1 309 aa11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 LOXL2Q9Y4K0 774 aa11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 A0A0A6YYJ9 748 aa11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 MKRN2OSH3BPM6 223 aa11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 CCSMST1Q4G0I0 132 aa11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 TMEM99Q8N816 258 aa11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 RDH5Q92781 318 aa11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 TMEM18Q96B42 140 aa11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 RPUSD4Q96CM3 377 aaKnown RBP11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 GABARAPL3Q9BY60 117 aa11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 MFRPQ9BY79 579 aa11.61□□□□□ -0.55
CCDC88C-204ENST00000389857 TXNIPQ9H3M7 391 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms