RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 HDHD2Q9H0R4 259 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 OR10A4Q9H209 315 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 PROCRQ9UNN8 238 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 NOSIPQ9Y314 301 aaKnown RBP8.97□□□□□ -0.97
VPS53-202ENST00000389040 ZGRF1Q86YA3 2104 aa8.97□□□□□ -0.97
VPS53-202ENST00000389040 MYO18BQ8IUG5 2567 aa8.96□□□□□ -0.97
VPS53-202ENST00000389040 TRBV5-5A0A0J9YX44 114 aa8.96□□□□□ -0.97
VPS53-202ENST00000389040 MEIOCA2RUB1 952 aa8.96□□□□□ -0.97
VPS53-202ENST00000389040 A6NIN4 97 aa8.96□□□□□ -0.97
VPS53-202ENST00000389040 CENPBD1B2RD01 187 aa8.96□□□□□ -0.97
VPS53-202ENST00000389040 AIPO00170 330 aa8.96□□□□□ -0.97
VPS53-202ENST00000389040 MRPL33O75394 65 aaKnown RBP8.96□□□□□ -0.97
VPS53-202ENST00000389040 MAGEB1P43366 347 aa8.96□□□□□ -0.97
VPS53-202ENST00000389040 OR3A2P47893 321 aa8.96□□□□□ -0.97
VPS53-202ENST00000389040 FOXF2Q12947 444 aa8.96□□□□□ -0.97
VPS53-202ENST00000389040 P2RY6Q15077 328 aa8.96□□□□□ -0.97
VPS53-202ENST00000389040 ETFDHQ16134 617 aa8.96□□□□□ -0.97
VPS53-202ENST00000389040 MEP1BQ16820 701 aa8.96□□□□□ -0.97
VPS53-202ENST00000389040 TUSC1Q2TAM9 212 aa8.96□□□□□ -0.97
VPS53-202ENST00000389040 OTPQ5XKR4 325 aa8.96□□□□□ -0.97
VPS53-202ENST00000389040 FAM205BPQ63HN1 556 aa8.96□□□□□ -0.97
VPS53-202ENST00000389040 ZNF57Q68EA5 555 aaPredicted RBP8.96□□□□□ -0.97
VPS53-202ENST00000389040 DNM1P34Q6PK57 102 aa8.96□□□□□ -0.97
VPS53-202ENST00000389040 SLC35D2Q76EJ3 337 aa8.96□□□□□ -0.97
VPS53-202ENST00000389040 ABHD12BQ7Z5M8 362 aaPredicted RBP8.96□□□□□ -0.97
VPS53-202ENST00000389040 ZSCAN2Q7Z7L9 614 aaPredicted RBP8.96□□□□□ -0.97
VPS53-202ENST00000389040 UEVLDQ8IX04 471 aa8.96□□□□□ -0.97
VPS53-202ENST00000389040 GCNT2Q8N0V5 402 aa8.96□□□□□ -0.97
VPS53-202ENST00000389040 PRSS35Q8N3Z0 413 aa8.96□□□□□ -0.97
VPS53-202ENST00000389040 CNEP1R1Q8N9A8 125 aa8.96□□□□□ -0.97
VPS53-202ENST00000389040 ZNF671Q8TAW3 534 aa8.96□□□□□ -0.97
VPS53-202ENST00000389040 LGALS14Q8TCE9 139 aa8.96□□□□□ -0.97
VPS53-202ENST00000389040 RFT1Q96AA3 541 aa8.96□□□□□ -0.97
VPS53-202ENST00000389040 C4orf45Q96LM5 186 aa8.96□□□□□ -0.97
VPS53-202ENST00000389040 CMTM3Q96MX0 182 aa8.96□□□□□ -0.97
VPS53-202ENST00000389040 GFI1Q99684 422 aa8.96□□□□□ -0.97
VPS53-202ENST00000389040 THAP7Q9BT49 309 aaPredicted RBP8.96□□□□□ -0.97
VPS53-202ENST00000389040 SLITRK2Q9H156 845 aa8.96□□□□□ -0.97
VPS53-202ENST00000389040 RNF121Q9H920 327 aa8.96□□□□□ -0.97
VPS53-202ENST00000389040 ELOVL3Q9HB03 270 aa8.96□□□□□ -0.97
VPS53-202ENST00000389040 SPATA2Q9UM82 520 aa8.96□□□□□ -0.97
VPS53-202ENST00000389040 CLEC4AQ9UMR7 237 aa8.96□□□□□ -0.97
VPS53-202ENST00000389040 FLVCR1Q9Y5Y0 555 aa8.96□□□□□ -0.97
VPS53-202ENST00000389040 IGHV3-15A0A0B4J1V0 119 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 IFITM5A6NNB3 132 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 TMEM127O75204 238 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 ZNF254O75437 659 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 CCNKO75909 580 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 UBL3O95164 117 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 NR4A2P43354 598 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 SORDQ00796 357 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 POU3F1Q03052 451 aaPredicted RBP8.95□□□□□ -0.98
VPS53-202ENST00000389040 ROM1Q03395 351 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 UBE2NLQ5JXB2 153 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 FDX2Q6P4F2 183 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 PLET1Q6UQ28 207 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 LRRN1Q6UXK5 716 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 BAIAP2L2Q6UXY1 529 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 GPAT4Q86UL3 456 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 ZNF679Q8IYX0 411 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 ZNF433Q8N7K0 673 aaPredicted RBP8.95□□□□□ -0.98
VPS53-202ENST00000389040 ZNF676Q8N7Q3 588 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 ZBTB8BQ8NAP8 495 aaPredicted RBP8.95□□□□□ -0.98
VPS53-202ENST00000389040 TRIM63Q969Q1 353 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 APH1AQ96BI3 265 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 ABHD1Q96SE0 405 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 TCF7L1Q9HCS4 588 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 B3GAT1Q9P2W7 334 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 COA3Q9Y2R0 106 aaPredicted RBP8.95□□□□□ -0.98
VPS53-202ENST00000389040 FAM240BA0A1B0GVZ2 78 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 ZNF814B7Z6K7 855 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 EEF1E1O43324 174 aaKnown RBP8.95□□□□□ -0.98
VPS53-202ENST00000389040 SLC43A1O75387 559 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 FAM157BP0CG42 384 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 NR2C1P13056 603 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 KIR3DL2P43630 455 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 SOX2P48431 317 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 CCR9P51686 369 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 PITPNAQ00169 270 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 CBX3Q13185 183 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 EIF2B1Q14232 305 aaKnown RBP8.95□□□□□ -0.98
VPS53-202ENST00000389040 WDR38Q5JTN6 314 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 HES5Q5TA89 166 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 HACD4Q5VWC8 232 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 KCTD18Q6PI47 426 aaPredicted RBP8.95□□□□□ -0.98
VPS53-202ENST00000389040 STAC2Q6ZMT1 411 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 Q6ZT83 130 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 LIX1LQ8IVB5 337 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 ZNF100Q8IYN0 542 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 ZIC4Q8N9L1 334 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 DUSP18Q8NEJ0 188 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 GPR148Q8TDV2 347 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 RNASE6Q93091 150 aaKnown RBP8.95□□□□□ -0.98
VPS53-202ENST00000389040 KCNK17Q96T54 332 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 LINC00470Q9BZP3 86 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 V9GY05 133 aa8.95□□□□□ -0.98
VPS53-202ENST00000389040 TRBV5-7A0A0A0MS05 114 aa8.94□□□□□ -0.98
VPS53-202ENST00000389040 PYCARD-AS1I3L0S3 204 aa8.94□□□□□ -0.98
VPS53-202ENST00000389040 LANCL1O43813 399 aa8.94□□□□□ -0.98
VPS53-202ENST00000389040 RAF1P04049 648 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms