RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 RPEQ96AT9 228 aa1.24□□□□□ -2.21
VPS13A-206ENST00000376646 ISG20Q96AZ6 181 aaKnown RBP1.24□□□□□ -2.21
VPS13A-206ENST00000376646 ZNF707Q96C28 371 aaPredicted RBP1.24□□□□□ -2.21
VPS13A-206ENST00000376646 NEURL3Q96EH8 262 aa1.24□□□□□ -2.21
VPS13A-206ENST00000376646 ZNF382Q96SR6 550 aa1.24□□□□□ -2.21
VPS13A-206ENST00000376646 BLZF1Q9H2G9 400 aa1.24□□□□□ -2.21
VPS13A-206ENST00000376646 ZNF430Q9H8G1 570 aaPredicted RBP1.24□□□□□ -2.21
VPS13A-206ENST00000376646 HMG20AQ9NP66 347 aa1.24□□□□□ -2.21
VPS13A-206ENST00000376646 ZC4H2Q9NQZ6 224 aa1.24□□□□□ -2.21
VPS13A-206ENST00000376646 ZNF355PQ9NSJ1 428 aa1.24□□□□□ -2.21
VPS13A-206ENST00000376646 ZNF282Q9UDV7 671 aaPredicted RBP1.24□□□□□ -2.21
VPS13A-206ENST00000376646 DDX19BQ9UMR2 479 aa1.24□□□□□ -2.21
VPS13A-206ENST00000376646 TSSC4Q9Y5U2 329 aaPredicted RBP1.24□□□□□ -2.21
VPS13A-206ENST00000376646 IGSF9BQ9UPX0 1349 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 HIVEP2P31629 2446 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 ADAMTS13Q76LX8 1427 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 SMIM26A0A096LP01 95 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 IGKV1-8A0A0C4DH67 115 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 A0A0J9YXV3 536 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 RAD51BO15315 384 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 ZNF324O75467 553 aaPredicted RBP1.23□□□□□ -2.21
VPS13A-206ENST00000376646 GCM2O75603 506 aaPredicted RBP1.23□□□□□ -2.21
VPS13A-206ENST00000376646 TDP2O95551 362 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 HPRT1P00492 218 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 ADRA2AP08913 450 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 OR56A5P0C7T3 313 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 PGA5P0DJD9 388 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 IGFBP3P17936 291 aaPredicted RBP1.23□□□□□ -2.21
VPS13A-206ENST00000376646 DTYMKP23919 212 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 CD82P27701 267 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 RBM34P42696 430 aaKnown RBP1.23□□□□□ -2.21
VPS13A-206ENST00000376646 KIR3DL2P43630 455 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 SLC11A1P49279 550 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 CLDN18P56856 261 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 ZNF33AQ06730 810 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 SPAG1Q07617 926 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 LOXL1Q08397 574 aaPredicted RBP1.23□□□□□ -2.21
VPS13A-206ENST00000376646 WDR43Q15061 677 aaKnown RBP eCLIP1.23□□□□□ -2.21
VPS13A-206ENST00000376646 IRF4Q15306 451 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 HADHQ16836 314 aaKnown RBP1.23□□□□□ -2.21
VPS13A-206ENST00000376646 CHRFAM7AQ494W8 412 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 TCEAL5Q5H9L2 206 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 SAXO2Q658L1 398 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 ADNP2Q6IQ32 1131 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 FAM122BQ7Z309 247 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 NKAIN4Q8IVV8 208 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 MYOCDQ8IZQ8 938 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 CMTM8Q8IZV2 173 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 VKORC1L1Q8N0U8 176 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 INO80EQ8NBZ0 244 aaPredicted RBP1.23□□□□□ -2.21
VPS13A-206ENST00000376646 OR5AR1Q8NGP9 310 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 OR8U1Q8NH10 309 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 UBALD1Q8TB05 177 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 RGP1Q92546 391 aaPredicted RBP1.23□□□□□ -2.21
VPS13A-206ENST00000376646 RAB1CQ92928 201 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 TCEAL3Q969E4 200 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 CERS2Q96G23 380 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 C9orf72Q96LT7 481 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 LZTS2Q9BRK4 669 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 SLIRPQ9GZT3 109 aaKnown RBP1.23□□□□□ -2.21
VPS13A-206ENST00000376646 NAA50Q9GZZ1 169 aaKnown RBP1.23□□□□□ -2.21
VPS13A-206ENST00000376646 CYP3A43Q9HB55 503 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 MYOZ1Q9NP98 299 aaPredicted RBP1.23□□□□□ -2.21
VPS13A-206ENST00000376646 ZNRD1Q9P1U0 126 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 SLC17A7Q9P2U7 560 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 YTHDF2Q9Y5A9 579 aaKnown RBP1.23□□□□□ -2.21
VPS13A-206ENST00000376646 PALLDQ8WX93 1383 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 PCDH11XQ9BZA7 1347 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 TRAV19A0A0A6YYK7 116 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 A0A1W2PRD5 423 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 ZNF99A8MXY4 864 aaPredicted RBP1.23□□□□□ -2.21
VPS13A-206ENST00000376646 H0YC42 278 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 DNASE2O00115 360 aaPredicted RBP1.23□□□□□ -2.21
VPS13A-206ENST00000376646 SEMA3DO95025 777 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 YIF1AO95070 293 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 WISP3O95389 354 aaPredicted RBP1.23□□□□□ -2.21
VPS13A-206ENST00000376646 MRPL3P09001 348 aaKnown RBP1.23□□□□□ -2.21
VPS13A-206ENST00000376646 RHOXF2BP0C7M4 288 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 PGA4P0DJD7 388 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 PGA3P0DJD8 388 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 CD37P11049 281 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 GZMAP12544 262 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 PSMC3P17980 439 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 PEX19P40855 299 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 SYNJ2BPP57105 145 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 CACNG7P62955 275 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 DNAJC3Q13217 504 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 KIR2DS1Q14954 304 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 RBMY1FQ15415 496 aaKnown RBP1.23□□□□□ -2.21
VPS13A-206ENST00000376646 KLHL40Q2TBA0 621 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 ZNF684Q5T5D7 378 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 AVPI1Q5T686 147 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 SNX20Q7Z614 316 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 WDR86Q86TI4 376 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 CALHM1Q8IU99 346 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 WDFY1Q8IWB7 410 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 LGI3Q8N145 548 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 KIF2BQ8N4N8 673 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 TRAM1L1Q8N609 369 aa1.23□□□□□ -2.21
VPS13A-206ENST00000376646 ZNF321PQ8N8H1 164 aa1.23□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms