RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 POFUT1Q9H488 388 aa18.44■□□□□ 0.54
CCDC88B-203ENST00000359902 MOB1AQ9H8S9 216 aa18.44■□□□□ 0.54
CCDC88B-203ENST00000359902 PROK2Q9HC23 129 aa18.44■□□□□ 0.54
CCDC88B-203ENST00000359902 COLQQ9Y215 455 aaPredicted RBP18.44■□□□□ 0.54
CCDC88B-203ENST00000359902 WDFY3Q8IZQ1 3526 aa18.44■□□□□ 0.54
CCDC88B-203ENST00000359902 ZNF736B4DX44 427 aaPredicted RBP18.44■□□□□ 0.54
CCDC88B-203ENST00000359902 M0R233 179 aa18.44■□□□□ 0.54
CCDC88B-203ENST00000359902 BPNT1O95861 308 aa18.44■□□□□ 0.54
CCDC88B-203ENST00000359902 AMY2AP04746 511 aa18.44■□□□□ 0.54
CCDC88B-203ENST00000359902 CCL3P10147 92 aa18.44■□□□□ 0.54
CCDC88B-203ENST00000359902 ENPP1P22413 925 aa18.44■□□□□ 0.54
CCDC88B-203ENST00000359902 H3F3AP84243 136 aa18.44■□□□□ 0.54
CCDC88B-203ENST00000359902 TRA2AQ13595 282 aaKnown RBP eCLIP18.44■□□□□ 0.54
CCDC88B-203ENST00000359902 ESCO2Q56NI9 601 aa18.44■□□□□ 0.54
CCDC88B-203ENST00000359902 PEAR1Q5VY43 1037 aaPredicted RBP18.44■□□□□ 0.54
CCDC88B-203ENST00000359902 GNRHR2Q96P88 292 aa18.44■□□□□ 0.54
CCDC88B-203ENST00000359902 SLC25A21Q9BQT8 299 aaPredicted RBP18.44■□□□□ 0.54
CCDC88B-203ENST00000359902 ANGPTL4Q9BY76 406 aa18.44■□□□□ 0.54
CCDC88B-203ENST00000359902 ZNF319Q9P2F9 582 aa18.44■□□□□ 0.54
CCDC88B-203ENST00000359902 UPB1Q9UBR1 384 aa18.44■□□□□ 0.54
CCDC88B-203ENST00000359902 OPN4Q9UHM6 478 aa18.44■□□□□ 0.54
CCDC88B-203ENST00000359902 VSIG8P0DPA2 414 aa18.43■□□□□ 0.54
CCDC88B-203ENST00000359902 SLC2A1P11166 492 aa18.43■□□□□ 0.54
CCDC88B-203ENST00000359902 NFYAP23511 347 aaPredicted RBP18.43■□□□□ 0.54
CCDC88B-203ENST00000359902 CLDN17P56750 224 aa18.43■□□□□ 0.54
CCDC88B-203ENST00000359902 ZNF121P58317 390 aaPredicted RBP18.43■□□□□ 0.54
CCDC88B-203ENST00000359902 MC2RQ01718 297 aa18.43■□□□□ 0.54
CCDC88B-203ENST00000359902 OC90Q02509 493 aaPredicted RBP18.43■□□□□ 0.54
CCDC88B-203ENST00000359902 OPCMLQ14982 345 aa18.43■□□□□ 0.54
CCDC88B-203ENST00000359902 C4orf46Q504U0 113 aa18.43■□□□□ 0.54
CCDC88B-203ENST00000359902 OR8B12Q8NGG6 310 aa18.43■□□□□ 0.54
CCDC88B-203ENST00000359902 M1APQ8TC57 530 aa18.43■□□□□ 0.54
CCDC88B-203ENST00000359902 CMBLQ96DG6 245 aa18.43■□□□□ 0.54
CCDC88B-203ENST00000359902 SOX7Q9BT81 388 aa18.43■□□□□ 0.54
CCDC88B-203ENST00000359902 SLC5A6Q9Y289 635 aa18.43■□□□□ 0.54
CCDC88B-203ENST00000359902 VPS13AQ96RL7 3174 aa18.43■□□□□ 0.54
CCDC88B-203ENST00000359902 PMS2P2O95744 297 aa18.43■□□□□ 0.54
CCDC88B-203ENST00000359902 ANOS1P23352 680 aa18.43■□□□□ 0.54
CCDC88B-203ENST00000359902 FAM46BQ96A09 425 aa18.43■□□□□ 0.54
CCDC88B-203ENST00000359902 ELMOD3Q96FG2 381 aa18.43■□□□□ 0.54
CCDC88B-203ENST00000359902 TMEM82A0PJX8 343 aa18.42■□□□□ 0.54
CCDC88B-203ENST00000359902 C9J4A7 227 aa18.42■□□□□ 0.54
CCDC88B-203ENST00000359902 MCRIP1C9JLW8 97 aa18.42■□□□□ 0.54
CCDC88B-203ENST00000359902 GOSR2O14653 212 aa18.42■□□□□ 0.54
CCDC88B-203ENST00000359902 ABOP16442 354 aa18.42■□□□□ 0.54
CCDC88B-203ENST00000359902 POU4F3Q15319 338 aa18.42■□□□□ 0.54
CCDC88B-203ENST00000359902 SMUG1Q53HV7 270 aa18.42■□□□□ 0.54
CCDC88B-203ENST00000359902 CHMP1BQ7LBR1 199 aa18.42■□□□□ 0.54
CCDC88B-203ENST00000359902 RNF144BQ7Z419 303 aa18.42■□□□□ 0.54
CCDC88B-203ENST00000359902 OR4S1Q8NGB4 309 aa18.42■□□□□ 0.54
CCDC88B-203ENST00000359902 TNFAIP8L1Q8WVP5 186 aa18.42■□□□□ 0.54
CCDC88B-203ENST00000359902 NTNG2Q96CW9 530 aa18.42■□□□□ 0.54
CCDC88B-203ENST00000359902 UBQLN2Q9UHD9 624 aa18.42■□□□□ 0.54
CCDC88B-203ENST00000359902 TLX3O43711 291 aaPredicted RBP18.41■□□□□ 0.54
CCDC88B-203ENST00000359902 ZNF20P17024 532 aa18.41■□□□□ 0.54
CCDC88B-203ENST00000359902 DUSP3P51452 185 aaPredicted RBP18.41■□□□□ 0.54
CCDC88B-203ENST00000359902 CDNFQ49AH0 187 aa18.41■□□□□ 0.54
CCDC88B-203ENST00000359902 DCAF12L2Q5VW00 463 aa18.41■□□□□ 0.54
CCDC88B-203ENST00000359902 ABHD12BQ7Z5M8 362 aaPredicted RBP18.41■□□□□ 0.54
CCDC88B-203ENST00000359902 FJX1Q86VR8 437 aa18.41■□□□□ 0.54
CCDC88B-203ENST00000359902 ZNF584Q8IVC4 421 aa18.41■□□□□ 0.54
CCDC88B-203ENST00000359902 BPIFB2Q8N4F0 458 aa18.41■□□□□ 0.54
CCDC88B-203ENST00000359902 SLC6A7Q99884 636 aa18.41■□□□□ 0.54
CCDC88B-203ENST00000359902 GPR84Q9NQS5 396 aa18.41■□□□□ 0.54
CCDC88B-203ENST00000359902 FARSAQ9Y285 508 aaKnown RBP18.41■□□□□ 0.54
CCDC88B-203ENST00000359902 AUP1Q9Y679 476 aa18.41■□□□□ 0.54
CCDC88B-203ENST00000359902 RPS10-NUDT3A0A1W2PQS6 291 aa18.41■□□□□ 0.54
CCDC88B-203ENST00000359902 ZIC3O60481 467 aa18.41■□□□□ 0.54
CCDC88B-203ENST00000359902 ZNF35P13682 527 aa18.41■□□□□ 0.54
CCDC88B-203ENST00000359902 LIFP15018 202 aa18.41■□□□□ 0.54
CCDC88B-203ENST00000359902 ZNF93P35789 620 aaPredicted RBP18.41■□□□□ 0.54
CCDC88B-203ENST00000359902 SSR4P51571 173 aa18.41■□□□□ 0.54
CCDC88B-203ENST00000359902 P2RX3P56373 397 aa18.41■□□□□ 0.54
CCDC88B-203ENST00000359902 ANGPTL5Q86XS5 388 aa18.41■□□□□ 0.54
CCDC88B-203ENST00000359902 MAML2Q8IZL2 1156 aaPredicted RBP18.41■□□□□ 0.54
CCDC88B-203ENST00000359902 OR2Y1Q8NGV0 311 aa18.41■□□□□ 0.54
CCDC88B-203ENST00000359902 PAQR8Q8TEZ7 354 aa18.41■□□□□ 0.54
CCDC88B-203ENST00000359902 CCDC107Q8WV48 283 aa18.41■□□□□ 0.54
CCDC88B-203ENST00000359902 EDEM2Q9BV94 578 aa18.41■□□□□ 0.54
CCDC88B-203ENST00000359902 SH2D2AQ9NP31 389 aa18.41■□□□□ 0.54
CCDC88B-203ENST00000359902 GLTPQ9NZD2 209 aa18.41■□□□□ 0.54
CCDC88B-203ENST00000359902 F5H5P2 479 aa18.4■□□□□ 0.54
CCDC88B-203ENST00000359902 L7N2F9 121 aa18.4■□□□□ 0.54
CCDC88B-203ENST00000359902 SNAPC5O75971 98 aa18.4■□□□□ 0.54
CCDC88B-203ENST00000359902 ERCC1P07992 297 aaPredicted RBP18.4■□□□□ 0.54
CCDC88B-203ENST00000359902 OR4E1P0C645 316 aa18.4■□□□□ 0.54
CCDC88B-203ENST00000359902 ZNF17P17021 662 aa18.4■□□□□ 0.54
CCDC88B-203ENST00000359902 MPPED2Q15777 294 aa18.4■□□□□ 0.54
CCDC88B-203ENST00000359902 CHST4Q8NCG5 386 aa18.4■□□□□ 0.54
CCDC88B-203ENST00000359902 FBLN5Q9UBX5 448 aa18.4■□□□□ 0.54
CCDC88B-203ENST00000359902 FRYLO94915 3013 aa18.4■□□□□ 0.54
CCDC88B-203ENST00000359902 G3V3Y1 287 aa18.4■□□□□ 0.54
CCDC88B-203ENST00000359902 LAMTOR5O43504 91 aa18.4■□□□□ 0.54
CCDC88B-203ENST00000359902 C4BPBP20851 252 aa18.4■□□□□ 0.54
CCDC88B-203ENST00000359902 CX3CR1P49238 355 aa18.4■□□□□ 0.54
CCDC88B-203ENST00000359902 DSCR4P56555 118 aaPredicted RBP18.4■□□□□ 0.54
CCDC88B-203ENST00000359902 CLLU1Q5K131 121 aa18.4■□□□□ 0.54
CCDC88B-203ENST00000359902 B3GNTL1Q67FW5 361 aaPredicted RBP18.4■□□□□ 0.54
CCDC88B-203ENST00000359902 COMMD2Q86X83 199 aa18.4■□□□□ 0.54
CCDC88B-203ENST00000359902 OR5AS1Q8N127 324 aa18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms