RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 ZNF321PQ8N8H1 164 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 PELI1Q96FA3 418 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 UBL7Q96S82 380 aaPredicted RBP17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 GPR84Q9NQS5 396 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 MMACHCQ9Y4U1 282 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 KCNE3Q9Y6H6 103 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 FAM221AA4D161 298 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 F10P00742 488 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 GLAP06280 429 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 GABRA2P47869 451 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 MLF1P58340 268 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 HSF1Q00613 529 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 GUK1Q16774 197 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 SPANXN5Q5MJ07 72 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 OR4F5Q8NH21 305 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 RTN4IP1Q8WWV3 396 aaPredicted RBP17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 CMBLQ96DG6 245 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 OR4F4Q96R69 305 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 SIGLEC6O43699 453 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 NTF3P20783 257 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 CMTM3Q96MX0 182 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 MAGT1Q9H0U3 335 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 HIPK2Q9H2X6 1198 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 TMPRSS5Q9H3S3 457 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 OPA3Q9H6K4 179 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 MTFP1Q9UDX5 166 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 CYB5R1Q9UHQ9 305 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 SLC5A6Q9Y289 635 aa17.72■□□□□ 0.43
CCDC88B-202ENST00000356786 G0S2P27469 103 aa17.71■□□□□ 0.43
CCDC88B-202ENST00000356786 ZNF787Q6DD87 383 aa17.71■□□□□ 0.43
CCDC88B-202ENST00000356786 ZNF813Q6ZN06 617 aa17.71■□□□□ 0.43
CCDC88B-202ENST00000356786 C9orf62Q8N4C0 152 aa17.71■□□□□ 0.43
CCDC88B-202ENST00000356786 OR13D1Q8NGV5 346 aa17.71■□□□□ 0.43
CCDC88B-202ENST00000356786 GDF2Q9UK05 429 aaPredicted RBP17.71■□□□□ 0.43
CCDC88B-202ENST00000356786 KCND3Q9UK17 655 aa17.71■□□□□ 0.43
CCDC88B-202ENST00000356786 FAM96BQ9Y3D0 163 aa17.71■□□□□ 0.43
CCDC88B-202ENST00000356786 EDN3P14138 238 aa17.71■□□□□ 0.43
CCDC88B-202ENST00000356786 RBP2P50120 134 aa17.71■□□□□ 0.43
CCDC88B-202ENST00000356786 B4GALNT1Q00973 533 aa17.71■□□□□ 0.43
CCDC88B-202ENST00000356786 DHRS2Q13268 280 aa17.71■□□□□ 0.43
CCDC88B-202ENST00000356786 KIRREL2Q6UWL6 708 aa17.71■□□□□ 0.43
CCDC88B-202ENST00000356786 FAM24BQ8N5W8 94 aa17.71■□□□□ 0.43
CCDC88B-202ENST00000356786 BCORP1Q8N888 145 aa17.71■□□□□ 0.43
CCDC88B-202ENST00000356786 C1QTNF6Q9BXI9 259 aa17.71■□□□□ 0.43
CCDC88B-202ENST00000356786 TBC1D29Q9UFV1 150 aa17.71■□□□□ 0.43
CCDC88B-202ENST00000356786 HSPB2A8KAH6 182 aa17.71■□□□□ 0.43
CCDC88B-202ENST00000356786 ZNF90Q03938 601 aa17.71■□□□□ 0.43
CCDC88B-202ENST00000356786 HSPB2Q16082 182 aa17.71■□□□□ 0.43
CCDC88B-202ENST00000356786 TP53I13Q8NBR0 393 aaPredicted RBP17.71■□□□□ 0.43
CCDC88B-202ENST00000356786 OR51I2Q9H344 312 aa17.71■□□□□ 0.43
CCDC88B-202ENST00000356786 CHRNA9Q9UGM1 479 aa17.71■□□□□ 0.43
CCDC88B-202ENST00000356786 NSG1A0A0A6YYJ2 146 aa17.71■□□□□ 0.42
CCDC88B-202ENST00000356786 FABP4P15090 132 aa17.71■□□□□ 0.42
CCDC88B-202ENST00000356786 CD22P20273 847 aa17.71■□□□□ 0.42
CCDC88B-202ENST00000356786 CD38P28907 300 aa17.71■□□□□ 0.42
CCDC88B-202ENST00000356786 ELFN2Q5R3F8 820 aa17.71■□□□□ 0.42
CCDC88B-202ENST00000356786 RTN4RL1Q86UN2 441 aaPredicted RBP17.71■□□□□ 0.42
CCDC88B-202ENST00000356786 OR52N5Q8NH56 324 aa17.71■□□□□ 0.42
CCDC88B-202ENST00000356786 CXorf58Q96LI9 332 aa17.71■□□□□ 0.42
CCDC88B-202ENST00000356786 TOX2Q96NM4 488 aa17.71■□□□□ 0.42
CCDC88B-202ENST00000356786 FAM234AQ9H0X4 552 aa17.71■□□□□ 0.42
CCDC88B-202ENST00000356786 MMP26Q9NRE1 261 aa17.71■□□□□ 0.42
CCDC88B-202ENST00000356786 PLSCR5A0PG75 271 aa17.7■□□□□ 0.42
CCDC88B-202ENST00000356786 PRSS37A4D1T9 235 aa17.7■□□□□ 0.42
CCDC88B-202ENST00000356786 F6UZH7 168 aa17.7■□□□□ 0.42
CCDC88B-202ENST00000356786 EIF1BO60739 113 aaKnown RBP17.7■□□□□ 0.42
CCDC88B-202ENST00000356786 LYPD8Q6UX82 237 aa17.7■□□□□ 0.42
CCDC88B-202ENST00000356786 UBAC2Q8NBM4 344 aa17.7■□□□□ 0.42
CCDC88B-202ENST00000356786 GPR119Q8TDV5 335 aa17.7■□□□□ 0.42
CCDC88B-202ENST00000356786 ZNF331Q9NQX6 463 aaPredicted RBP17.7■□□□□ 0.42
CCDC88B-202ENST00000356786 SLCO1B1Q9Y6L6 691 aa17.7■□□□□ 0.42
CCDC88B-202ENST00000356786 PLA2G10O15496 165 aa17.7■□□□□ 0.42
CCDC88B-202ENST00000356786 PIGPP57054 158 aa17.7■□□□□ 0.42
CCDC88B-202ENST00000356786 MIDNQ504T8 468 aa17.7■□□□□ 0.42
CCDC88B-202ENST00000356786 TFAP2EQ6VUC0 442 aa17.7■□□□□ 0.42
CCDC88B-202ENST00000356786 HHIPQ96QV1 700 aa17.7■□□□□ 0.42
CCDC88B-202ENST00000356786 FOXJ3Q9UPW0 622 aa17.7■□□□□ 0.42
CCDC88B-202ENST00000356786 R4GMQ9 66 aa17.7■□□□□ 0.42
CCDC88B-202ENST00000356786 PPP1R3BQ86XI6 285 aa17.7■□□□□ 0.42
CCDC88B-202ENST00000356786 KCNIP2Q9NS61 270 aa17.7■□□□□ 0.42
CCDC88B-202ENST00000356786 ZNF586Q9NXT0 402 aa17.7■□□□□ 0.42
CCDC88B-202ENST00000356786 NXPH2O95156 264 aa17.69■□□□□ 0.42
CCDC88B-202ENST00000356786 ZFPL1O95159 310 aa17.69■□□□□ 0.42
CCDC88B-202ENST00000356786 SELENOPP49908 381 aa17.69■□□□□ 0.42
CCDC88B-202ENST00000356786 ZNF528Q3MIS6 628 aa17.69■□□□□ 0.42
CCDC88B-202ENST00000356786 FGF21Q9NSA1 209 aa17.69■□□□□ 0.42
CCDC88B-202ENST00000356786 PRKNO60260 465 aaPredicted RBP17.69■□□□□ 0.42
CCDC88B-202ENST00000356786 GSTP1P09211 210 aaKnown RBP17.69■□□□□ 0.42
CCDC88B-202ENST00000356786 PLXDC2Q6UX71 529 aa17.69■□□□□ 0.42
CCDC88B-202ENST00000356786 ZNF485Q8NCK3 441 aa17.69■□□□□ 0.42
CCDC88B-202ENST00000356786 OR10J5Q8NHC4 309 aa17.69■□□□□ 0.42
CCDC88B-202ENST00000356786 EIF1P41567 113 aaKnown RBP17.69■□□□□ 0.42
CCDC88B-202ENST00000356786 DPTQ07507 201 aa17.69■□□□□ 0.42
CCDC88B-202ENST00000356786 CDKN3Q16667 212 aa17.69■□□□□ 0.42
CCDC88B-202ENST00000356786 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.69■□□□□ 0.42
CCDC88B-202ENST00000356786 LRP5LA4QPB2 252 aa17.69■□□□□ 0.42
CCDC88B-202ENST00000356786 POM121BA6NF01 834 aa17.69■□□□□ 0.42
CCDC88B-202ENST00000356786 TOMM34Q15785 309 aaPredicted RBP17.69■□□□□ 0.42
CCDC88B-202ENST00000356786 NCR3LG1Q68D85 454 aa17.69■□□□□ 0.42
CCDC88B-202ENST00000356786 C17orf47Q8NEP4 570 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms