RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 AMY2AP04746 511 aa17.15■□□□□ 0.34
COL9A3-201ENST00000343916 KLK3P07288 261 aaPredicted RBP17.15■□□□□ 0.34
COL9A3-201ENST00000343916 CCL3P10147 92 aa17.15■□□□□ 0.34
COL9A3-201ENST00000343916 ABOP16442 354 aa17.15■□□□□ 0.34
COL9A3-201ENST00000343916 CXCL2P19875 107 aa17.15■□□□□ 0.34
COL9A3-201ENST00000343916 IL11RAQ14626 422 aa17.15■□□□□ 0.34
COL9A3-201ENST00000343916 DMRTC1Q5HYR2 192 aa17.15■□□□□ 0.34
COL9A3-201ENST00000343916 FAM198BQ6UWH4 519 aa17.15■□□□□ 0.34
COL9A3-201ENST00000343916 UBALD2Q8IYN6 164 aa17.15■□□□□ 0.34
COL9A3-201ENST00000343916 OR1M1Q8NGA1 313 aa17.15■□□□□ 0.34
COL9A3-201ENST00000343916 JSRP1Q96MG2 331 aaPredicted RBP17.15■□□□□ 0.34
COL9A3-201ENST00000343916 POFUT1Q9H488 388 aa17.15■□□□□ 0.34
COL9A3-201ENST00000343916 WDR54Q9H977 334 aa17.15■□□□□ 0.34
COL9A3-201ENST00000343916 RDH8Q9NYR8 311 aa17.15■□□□□ 0.34
COL9A3-201ENST00000343916 CCDC163A0A0D9SF12 145 aa17.15■□□□□ 0.34
COL9A3-201ENST00000343916 ZNF878C9JN71 531 aa17.15■□□□□ 0.34
COL9A3-201ENST00000343916 CDK2AP1O14519 115 aa17.15■□□□□ 0.34
COL9A3-201ENST00000343916 GOSR2O14653 212 aa17.15■□□□□ 0.34
COL9A3-201ENST00000343916 GFOD2Q3B7J2 385 aa17.15■□□□□ 0.34
COL9A3-201ENST00000343916 DCAF12L2Q5VW00 463 aa17.15■□□□□ 0.34
COL9A3-201ENST00000343916 ABHD12BQ7Z5M8 362 aaPredicted RBP17.15■□□□□ 0.34
COL9A3-201ENST00000343916 RTN4RL2Q86UN3 420 aa17.15■□□□□ 0.34
COL9A3-201ENST00000343916 ADPRHL1Q8NDY3 354 aa17.15■□□□□ 0.34
COL9A3-201ENST00000343916 OR6X1Q8NH79 312 aa17.15■□□□□ 0.34
COL9A3-201ENST00000343916 TNFAIP8L1Q8WVP5 186 aa17.15■□□□□ 0.34
COL9A3-201ENST00000343916 NCOA6Q14686 2063 aaPredicted RBP17.15■□□□□ 0.34
COL9A3-201ENST00000343916 LOC102723996A0A087X1L8 192 aa17.14■□□□□ 0.34
COL9A3-201ENST00000343916 IGHV3-15A0A0B4J1V0 119 aa17.14■□□□□ 0.34
COL9A3-201ENST00000343916 A0A1B0GTI1 187 aa17.14■□□□□ 0.34
COL9A3-201ENST00000343916 PLSCR5A0PG75 271 aa17.14■□□□□ 0.34
COL9A3-201ENST00000343916 RAB27BO00194 218 aa17.14■□□□□ 0.34
COL9A3-201ENST00000343916 CYB5AP00167 134 aa17.14■□□□□ 0.34
COL9A3-201ENST00000343916 COX6A1P12074 109 aa17.14■□□□□ 0.34
COL9A3-201ENST00000343916 CLDN17P56750 224 aa17.14■□□□□ 0.34
COL9A3-201ENST00000343916 RAP2BP61225 183 aa17.14■□□□□ 0.34
COL9A3-201ENST00000343916 GABREP78334 506 aa17.14■□□□□ 0.34
COL9A3-201ENST00000343916 SSBP1Q04837 148 aaKnown RBP17.14■□□□□ 0.34
COL9A3-201ENST00000343916 TAF13Q15543 124 aa17.14■□□□□ 0.34
COL9A3-201ENST00000343916 SLC25A47Q6Q0C1 308 aa17.14■□□□□ 0.34
COL9A3-201ENST00000343916 TMED4Q7Z7H5 227 aa17.14■□□□□ 0.34
COL9A3-201ENST00000343916 GSX2Q9BZM3 304 aa17.14■□□□□ 0.34
COL9A3-201ENST00000343916 SLC5A6Q9Y289 635 aa17.14■□□□□ 0.34
COL9A3-201ENST00000343916 HS3ST3B1Q9Y662 390 aa17.14■□□□□ 0.34
COL9A3-201ENST00000343916 CELSR3Q9NYQ7 3312 aa17.14■□□□□ 0.33
COL9A3-201ENST00000343916 AQP7P3A6NL99 342 aa17.14■□□□□ 0.33
COL9A3-201ENST00000343916 ZNF726A6NNF4 738 aa17.14■□□□□ 0.33
COL9A3-201ENST00000343916 SULT1C2O00338 296 aa17.14■□□□□ 0.33
COL9A3-201ENST00000343916 RGS11O94810 467 aa17.14■□□□□ 0.33
COL9A3-201ENST00000343916 ZNF35P13682 527 aa17.14■□□□□ 0.33
COL9A3-201ENST00000343916 ZNF121P58317 390 aaPredicted RBP17.14■□□□□ 0.33
COL9A3-201ENST00000343916 OPCMLQ14982 345 aa17.14■□□□□ 0.33
COL9A3-201ENST00000343916 SLC22A6Q4U2R8 563 aa17.14■□□□□ 0.33
COL9A3-201ENST00000343916 TMEM229BQ8NBD8 167 aa17.14■□□□□ 0.33
COL9A3-201ENST00000343916 OR2AK2Q8NG84 335 aa17.14■□□□□ 0.33
COL9A3-201ENST00000343916 OR5D14Q8NGL3 314 aa17.14■□□□□ 0.33
COL9A3-201ENST00000343916 RBPMSQ93062 196 aaKnown RBP17.14■□□□□ 0.33
COL9A3-201ENST00000343916 OPN4Q9UHM6 478 aa17.14■□□□□ 0.33
COL9A3-201ENST00000343916 ZNF736B4DX44 427 aaPredicted RBP17.13■□□□□ 0.33
COL9A3-201ENST00000343916 ITGB2P05107 769 aa17.13■□□□□ 0.33
COL9A3-201ENST00000343916 VSIG8P0DPA2 414 aa17.13■□□□□ 0.33
COL9A3-201ENST00000343916 EIF1P41567 113 aaKnown RBP17.13■□□□□ 0.33
COL9A3-201ENST00000343916 NKPD1Q17RQ9 610 aa17.13■□□□□ 0.33
COL9A3-201ENST00000343916 SCGB2B2Q4G0G5 96 aa17.13■□□□□ 0.33
COL9A3-201ENST00000343916 C17orf107Q6ZR85 190 aa17.13■□□□□ 0.33
COL9A3-201ENST00000343916 TMPPEQ6ZT21 453 aa17.13■□□□□ 0.33
COL9A3-201ENST00000343916 GVQW1Q8N7I0 195 aa17.13■□□□□ 0.33
COL9A3-201ENST00000343916 CHST4Q8NCG5 386 aa17.13■□□□□ 0.33
COL9A3-201ENST00000343916 AGBL5Q8NDL9 886 aa17.13■□□□□ 0.33
COL9A3-201ENST00000343916 OR8B12Q8NGG6 310 aa17.13■□□□□ 0.33
COL9A3-201ENST00000343916 SLC25A43Q8WUT9 341 aaPredicted RBP17.13■□□□□ 0.33
COL9A3-201ENST00000343916 FOXRED1Q96CU9 486 aaPredicted RBP17.13■□□□□ 0.33
COL9A3-201ENST00000343916 RADILQ96JH8 1075 aa17.13■□□□□ 0.33
COL9A3-201ENST00000343916 IMMP1LQ96LU5 166 aa17.13■□□□□ 0.33
COL9A3-201ENST00000343916 PISDQ9UG56 409 aa17.13■□□□□ 0.33
COL9A3-201ENST00000343916 NXT1Q9UKK6 140 aaKnown RBP17.13■□□□□ 0.33
COL9A3-201ENST00000343916 RAB3AP20336 220 aa17.13■□□□□ 0.33
COL9A3-201ENST00000343916 HOXA6P31267 233 aa17.13■□□□□ 0.33
COL9A3-201ENST00000343916 CD163Q86VB7 1156 aa17.13■□□□□ 0.33
COL9A3-201ENST00000343916 WDR5BQ86VZ2 330 aa17.13■□□□□ 0.33
COL9A3-201ENST00000343916 SLC22A24Q8N4F4 322 aa17.13■□□□□ 0.33
COL9A3-201ENST00000343916 FAM71F1Q96KD3 344 aaPredicted RBP17.13■□□□□ 0.33
COL9A3-201ENST00000343916 SCPEP1Q9HB40 452 aa17.13■□□□□ 0.33
COL9A3-201ENST00000343916 PNRC2Q9NPJ4 139 aaKnown RBP17.13■□□□□ 0.33
COL9A3-201ENST00000343916 HDGFL3Q9Y3E1 203 aa17.13■□□□□ 0.33
COL9A3-201ENST00000343916 LOC100509620A0A075B734 347 aa17.12■□□□□ 0.33
COL9A3-201ENST00000343916 SMAD9O15198 467 aaKnown RBP17.12■□□□□ 0.33
COL9A3-201ENST00000343916 TDGF1P13385 188 aa17.12■□□□□ 0.33
COL9A3-201ENST00000343916 ADH6P28332 368 aa17.12■□□□□ 0.33
COL9A3-201ENST00000343916 RAET1LQ5VY80 246 aa17.12■□□□□ 0.33
COL9A3-201ENST00000343916 AWAT2Q6E213 333 aa17.12■□□□□ 0.33
COL9A3-201ENST00000343916 NUDCD2Q8WVJ2 157 aa17.12■□□□□ 0.33
COL9A3-201ENST00000343916 SFXN2Q96NB2 322 aa17.12■□□□□ 0.33
COL9A3-201ENST00000343916 PROK2Q9HC23 129 aa17.12■□□□□ 0.33
COL9A3-201ENST00000343916 GPR84Q9NQS5 396 aa17.12■□□□□ 0.33
COL9A3-201ENST00000343916 RAB22AQ9UL26 194 aa17.12■□□□□ 0.33
COL9A3-201ENST00000343916 TMEM82A0PJX8 343 aa17.12■□□□□ 0.33
COL9A3-201ENST00000343916 METTL21EPA6NDL7 271 aa17.12■□□□□ 0.33
COL9A3-201ENST00000343916 ZNF735P0CB33 412 aa17.12■□□□□ 0.33
COL9A3-201ENST00000343916 NFYAP23511 347 aaPredicted RBP17.12■□□□□ 0.33
COL9A3-201ENST00000343916 TAGLNQ01995 201 aaKnown RBP17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms