RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 SLC30A7Q8NEW0 376 aa19.98■□□□□ 0.79
TRIM28-202ENST00000341753 OR52N4Q8NGI2 321 aa19.98■□□□□ 0.79
TRIM28-202ENST00000341753 STOML3Q8TAV4 291 aa19.98■□□□□ 0.79
TRIM28-202ENST00000341753 SPACA5Q96QH8 159 aa19.98■□□□□ 0.79
TRIM28-202ENST00000341753 PTGES2Q9H7Z7 377 aa19.98■□□□□ 0.79
TRIM28-202ENST00000341753 TMEM100Q9NV29 134 aa19.98■□□□□ 0.79
TRIM28-202ENST00000341753 OR5AC2Q9NZP5 309 aa19.98■□□□□ 0.79
TRIM28-202ENST00000341753 METTL21EPA6NDL7 271 aa19.97■□□□□ 0.79
TRIM28-202ENST00000341753 SHISA7A6NL88 538 aa19.97■□□□□ 0.79
TRIM28-202ENST00000341753 FAM157CP0CG43 387 aa19.97■□□□□ 0.79
TRIM28-202ENST00000341753 CTSEP14091 401 aa19.97■□□□□ 0.79
TRIM28-202ENST00000341753 FSTP19883 344 aa19.97■□□□□ 0.79
TRIM28-202ENST00000341753 FMODQ06828 376 aa19.97■□□□□ 0.79
TRIM28-202ENST00000341753 ZDHHC22Q8N966 263 aa19.97■□□□□ 0.79
TRIM28-202ENST00000341753 OR52N5Q8NH56 324 aa19.97■□□□□ 0.79
TRIM28-202ENST00000341753 NUBPLQ8TB37 319 aa19.97■□□□□ 0.79
TRIM28-202ENST00000341753 NANPQ8TBE9 248 aa19.97■□□□□ 0.79
TRIM28-202ENST00000341753 OR11A1Q9GZK7 315 aa19.97■□□□□ 0.79
TRIM28-202ENST00000341753 ACKR4Q9NPB9 350 aa19.97■□□□□ 0.79
TRIM28-202ENST00000341753 CENPMQ9NSP4 180 aa19.97■□□□□ 0.79
TRIM28-202ENST00000341753 EDARQ9UNE0 448 aa19.97■□□□□ 0.79
TRIM28-202ENST00000341753 C2CD4DB7Z1M9 353 aa19.97■□□□□ 0.79
TRIM28-202ENST00000341753 HLA-DOBP13765 273 aa19.97■□□□□ 0.79
TRIM28-202ENST00000341753 FZD2Q14332 565 aa19.97■□□□□ 0.79
TRIM28-202ENST00000341753 MMP26Q9NRE1 261 aa19.97■□□□□ 0.79
TRIM28-202ENST00000341753 OR52A1Q9UKL2 312 aa19.97■□□□□ 0.79
TRIM28-202ENST00000341753 DUS4LO95620 317 aaKnown RBP19.96■□□□□ 0.79
TRIM28-202ENST00000341753 APOC1P02654 83 aa19.96■□□□□ 0.79
TRIM28-202ENST00000341753 EIF1AXP47813 144 aaKnown RBP19.96■□□□□ 0.79
TRIM28-202ENST00000341753 NPY4RP50391 375 aa19.96■□□□□ 0.79
TRIM28-202ENST00000341753 SNRPEP62304 92 aaKnown RBP19.96■□□□□ 0.79
TRIM28-202ENST00000341753 YPEL5P62699 121 aa19.96■□□□□ 0.79
TRIM28-202ENST00000341753 SLC16A13Q7RTY0 426 aa19.96■□□□□ 0.79
TRIM28-202ENST00000341753 DCXRQ7Z4W1 244 aa19.96■□□□□ 0.79
TRIM28-202ENST00000341753 NICN1Q9BSH3 213 aa19.96■□□□□ 0.79
TRIM28-202ENST00000341753 ABOP16442 354 aa19.96■□□□□ 0.79
TRIM28-202ENST00000341753 SGCAQ16586 387 aa19.96■□□□□ 0.79
TRIM28-202ENST00000341753 ARMC6Q6NXE6 501 aa19.96■□□□□ 0.79
TRIM28-202ENST00000341753 ZNF519Q8TB69 540 aa19.96■□□□□ 0.79
TRIM28-202ENST00000341753 CCNL2Q96S94 520 aaPredicted RBP19.96■□□□□ 0.79
TRIM28-202ENST00000341753 TPSD1Q9BZJ3 242 aa19.96■□□□□ 0.79
TRIM28-202ENST00000341753 ADAM19Q9H013 955 aa19.96■□□□□ 0.79
TRIM28-202ENST00000341753 RHOFQ9HBH0 211 aa19.96■□□□□ 0.79
TRIM28-202ENST00000341753 G6PC2Q9NQR9 355 aa19.96■□□□□ 0.79
TRIM28-202ENST00000341753 R4GMQ9 66 aa19.96■□□□□ 0.79
TRIM28-202ENST00000341753 LRP4O75096 1905 aa19.96■□□□□ 0.79
TRIM28-202ENST00000341753 TMEM269A0A1B0GVZ9 245 aa19.96■□□□□ 0.79
TRIM28-202ENST00000341753 PQLC2LA1A4F0 135 aa19.96■□□□□ 0.79
TRIM28-202ENST00000341753 PTGFRP43088 359 aa19.96■□□□□ 0.79
TRIM28-202ENST00000341753 PJVKQ0ZLH3 352 aa19.96■□□□□ 0.79
TRIM28-202ENST00000341753 FBXO17Q96EF6 278 aa19.96■□□□□ 0.79
TRIM28-202ENST00000341753 NRIP2Q9BQI9 281 aa19.96■□□□□ 0.79
TRIM28-202ENST00000341753 UQCC2Q9BRT2 126 aa19.96■□□□□ 0.79
TRIM28-202ENST00000341753 SLC5A6Q9Y289 635 aa19.96■□□□□ 0.79
TRIM28-202ENST00000341753 RHBDD3Q9Y3P4 386 aa19.96■□□□□ 0.79
TRIM28-202ENST00000341753 SSX5O60225 188 aa19.95■□□□□ 0.78
TRIM28-202ENST00000341753 ACAA1P09110 424 aaPredicted RBP19.95■□□□□ 0.78
TRIM28-202ENST00000341753 IL11P20809 199 aa19.95■□□□□ 0.78
TRIM28-202ENST00000341753 IGLV3-21P80748 117 aaPredicted RBP19.95■□□□□ 0.78
TRIM28-202ENST00000341753 ELAVL1Q15717 326 aaKnown RBP19.95■□□□□ 0.78
TRIM28-202ENST00000341753 RBMS3Q6XE24 437 aaKnown RBP19.95■□□□□ 0.78
TRIM28-202ENST00000341753 FOXRED2Q8IWF2 684 aa19.95■□□□□ 0.78
TRIM28-202ENST00000341753 C19orf47Q8N9M1 422 aaKnown RBP19.95■□□□□ 0.78
TRIM28-202ENST00000341753 OR51F2Q8NH61 342 aa19.95■□□□□ 0.78
TRIM28-202ENST00000341753 SEC11CQ9BY50 192 aa19.95■□□□□ 0.78
TRIM28-202ENST00000341753 MMP17Q9ULZ9 603 aa19.95■□□□□ 0.78
TRIM28-202ENST00000341753 PCNX3Q9H6A9 2034 aa19.95■□□□□ 0.78
TRIM28-202ENST00000341753 TRAV36DV7A0A075B6V5 113 aa19.95■□□□□ 0.78
TRIM28-202ENST00000341753 IL33O95760 270 aa19.95■□□□□ 0.78
TRIM28-202ENST00000341753 RABIFP47224 123 aa19.95■□□□□ 0.78
TRIM28-202ENST00000341753 ID4P47928 161 aa19.95■□□□□ 0.78
TRIM28-202ENST00000341753 C1orf100Q5SVJ3 147 aa19.95■□□□□ 0.78
TRIM28-202ENST00000341753 COX15Q7KZN9 410 aa19.95■□□□□ 0.78
TRIM28-202ENST00000341753 MAMDC2Q7Z304 686 aaPredicted RBP19.95■□□□□ 0.78
TRIM28-202ENST00000341753 FOXQ1Q9C009 403 aa19.95■□□□□ 0.78
TRIM28-202ENST00000341753 PRODH2Q9UF12 536 aa19.95■□□□□ 0.78
TRIM28-202ENST00000341753 RAB22AQ9UL26 194 aa19.95■□□□□ 0.78
TRIM28-202ENST00000341753 ATXN7L1Q9ULK2 861 aaPredicted RBP19.95■□□□□ 0.78
TRIM28-202ENST00000341753 CFAP54Q96N23 3096 aa19.95■□□□□ 0.78
TRIM28-202ENST00000341753 MEGF11A6BM72 1044 aa19.94■□□□□ 0.78
TRIM28-202ENST00000341753 PRAMEF26H0Y7S4 382 aa19.94■□□□□ 0.78
TRIM28-202ENST00000341753 ZNF107Q9UII5 783 aaPredicted RBP19.94■□□□□ 0.78
TRIM28-202ENST00000341753 SPTY2D1-AS1A0A0U1RR47 76 aa19.94■□□□□ 0.78
TRIM28-202ENST00000341753 DBX1A6NMT0 343 aa19.94■□□□□ 0.78
TRIM28-202ENST00000341753 LINC00587B1AMM8 73 aa19.94■□□□□ 0.78
TRIM28-202ENST00000341753 SRSF10O75494 262 aaKnown RBP19.94■□□□□ 0.78
TRIM28-202ENST00000341753 VSIG8P0DPA2 414 aa19.94■□□□□ 0.78
TRIM28-202ENST00000341753 PRTGQ2VWP7 1150 aa19.94■□□□□ 0.78
TRIM28-202ENST00000341753 PHF19Q5T6S3 580 aa19.94■□□□□ 0.78
TRIM28-202ENST00000341753 WDFY1Q8IWB7 410 aa19.94■□□□□ 0.78
TRIM28-202ENST00000341753 OR4K15Q8NH41 348 aa19.94■□□□□ 0.78
TRIM28-202ENST00000341753 RCC2Q9P258 522 aaKnown RBP19.94■□□□□ 0.78
TRIM28-202ENST00000341753 COL4A2P08572 1712 aa19.93■□□□□ 0.78
TRIM28-202ENST00000341753 A0A0A6YYH2 397 aa19.93■□□□□ 0.78
TRIM28-202ENST00000341753 A6NJ64 397 aa19.93■□□□□ 0.78
TRIM28-202ENST00000341753 RCC1P18754 421 aaPredicted RBP19.93■□□□□ 0.78
TRIM28-202ENST00000341753 NME2P22392 152 aa19.93■□□□□ 0.78
TRIM28-202ENST00000341753 RAB30Q15771 203 aa19.93■□□□□ 0.78
TRIM28-202ENST00000341753 MAP3K3Q99759 626 aa19.93■□□□□ 0.78
TRIM28-202ENST00000341753 LPAR3Q9UBY5 353 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms