RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 E9PLN8 166 aa11.73□□□□□ -0.53
HMGB1-202ENST00000339872 SYNGR3O43761 229 aa11.73□□□□□ -0.53
HMGB1-202ENST00000339872 SSX4O60224 188 aa11.73□□□□□ -0.53
HMGB1-202ENST00000339872 FCGR2AP12318 317 aa11.73□□□□□ -0.53
HMGB1-202ENST00000339872 SPNP16150 400 aa11.73□□□□□ -0.53
HMGB1-202ENST00000339872 ZNF20P17024 532 aa11.73□□□□□ -0.53
HMGB1-202ENST00000339872 PCBD1P61457 104 aa11.73□□□□□ -0.53
HMGB1-202ENST00000339872 ARF1P84077 181 aaKnown RBP11.73□□□□□ -0.53
HMGB1-202ENST00000339872 GLT8D1Q68CQ7 371 aa11.73□□□□□ -0.53
HMGB1-202ENST00000339872 PYHIN1Q6K0P9 492 aa11.73□□□□□ -0.53
HMGB1-202ENST00000339872 P4HA3Q7Z4N8 544 aa11.73□□□□□ -0.53
HMGB1-202ENST00000339872 SERPINA12Q8IW75 414 aa11.73□□□□□ -0.53
HMGB1-202ENST00000339872 C19orf18Q8NEA5 215 aa11.73□□□□□ -0.53
HMGB1-202ENST00000339872 FGFBP3Q8TAT2 258 aa11.73□□□□□ -0.53
HMGB1-202ENST00000339872 SYNPRQ8TBG9 265 aa11.73□□□□□ -0.53
HMGB1-202ENST00000339872 ABHD1Q96SE0 405 aa11.73□□□□□ -0.53
HMGB1-202ENST00000339872 MRPS7Q9Y2R9 242 aaKnown RBP11.73□□□□□ -0.53
HMGB1-202ENST00000339872 ZNF175Q9Y473 711 aa11.73□□□□□ -0.53
HMGB1-202ENST00000339872 ETV7Q9Y603 341 aa11.73□□□□□ -0.53
HMGB1-202ENST00000339872 SLC17A2O00624 439 aa11.72□□□□□ -0.53
HMGB1-202ENST00000339872 PFDN1O60925 122 aa11.72□□□□□ -0.53
HMGB1-202ENST00000339872 APOC1P02654 83 aa11.72□□□□□ -0.53
HMGB1-202ENST00000339872 PDGFAP04085 211 aa11.72□□□□□ -0.53
HMGB1-202ENST00000339872 AGTR1P30556 359 aa11.72□□□□□ -0.53
HMGB1-202ENST00000339872 FOXG1P55316 489 aaPredicted RBP11.72□□□□□ -0.53
HMGB1-202ENST00000339872 PSG4Q00888 419 aa11.72□□□□□ -0.53
HMGB1-202ENST00000339872 FAPQ12884 760 aa11.72□□□□□ -0.53
HMGB1-202ENST00000339872 RAB11BQ15907 218 aa11.72□□□□□ -0.53
HMGB1-202ENST00000339872 SFRP5Q5T4F7 317 aa11.72□□□□□ -0.53
HMGB1-202ENST00000339872 GDPD3Q7L5L3 318 aa11.72□□□□□ -0.53
HMGB1-202ENST00000339872 IZUMO1Q8IYV9 350 aa11.72□□□□□ -0.53
HMGB1-202ENST00000339872 OR51D1Q8NGF3 324 aa11.72□□□□□ -0.53
HMGB1-202ENST00000339872 OR1F12Q8NHA8 337 aa11.72□□□□□ -0.53
HMGB1-202ENST00000339872 TAAR6Q96RI8 345 aa11.72□□□□□ -0.53
HMGB1-202ENST00000339872 OR2H1Q9GZK4 316 aa11.72□□□□□ -0.53
HMGB1-202ENST00000339872 SLC17A5Q9NRA2 495 aa11.72□□□□□ -0.53
HMGB1-202ENST00000339872 CGGBP1Q9UFW8 167 aaPredicted RBP11.72□□□□□ -0.53
HMGB1-202ENST00000339872 TIMM10BQ9Y5J6 103 aa11.72□□□□□ -0.53
HMGB1-202ENST00000339872 URB1O60287 2271 aaKnown RBP11.72□□□□□ -0.53
HMGB1-202ENST00000339872 RPL36A-HNRNPH2H7BZ11 118 aa11.72□□□□□ -0.53
HMGB1-202ENST00000339872 AQP7O14520 342 aa11.72□□□□□ -0.53
HMGB1-202ENST00000339872 UBL3O95164 117 aa11.72□□□□□ -0.53
HMGB1-202ENST00000339872 HLA-DQB1P01920 261 aa11.72□□□□□ -0.53
HMGB1-202ENST00000339872 CRYGSP22914 178 aa11.72□□□□□ -0.53
HMGB1-202ENST00000339872 CFPP27918 469 aa11.72□□□□□ -0.53
HMGB1-202ENST00000339872 HTR5AP47898 357 aa11.72□□□□□ -0.53
HMGB1-202ENST00000339872 INPP1P49441 399 aa11.72□□□□□ -0.53
HMGB1-202ENST00000339872 ECH1Q13011 328 aa11.72□□□□□ -0.53
HMGB1-202ENST00000339872 ASAH1Q13510 395 aa11.72□□□□□ -0.53
HMGB1-202ENST00000339872 NRN1LQ496H8 165 aa11.72□□□□□ -0.53
HMGB1-202ENST00000339872 DOK3Q7L591 496 aa11.72□□□□□ -0.53
HMGB1-202ENST00000339872 JAGN1Q8N5M9 183 aa11.72□□□□□ -0.53
HMGB1-202ENST00000339872 OR13C9Q8NGT0 318 aa11.72□□□□□ -0.53
HMGB1-202ENST00000339872 WNT5BQ9H1J7 359 aa11.72□□□□□ -0.53
HMGB1-202ENST00000339872 PLEKHA1Q9HB21 404 aa11.72□□□□□ -0.53
HMGB1-202ENST00000339872 TBCCD1Q9NVR7 557 aa11.72□□□□□ -0.53
HMGB1-202ENST00000339872 SPTBN2O15020 2390 aa11.72□□□□□ -0.53
HMGB1-202ENST00000339872 A0A096LPE4 126 aa11.71□□□□□ -0.53
HMGB1-202ENST00000339872 A0A1W2PPZ6 126 aa11.71□□□□□ -0.53
HMGB1-202ENST00000339872 MEGF11A6BM72 1044 aa11.71□□□□□ -0.53
HMGB1-202ENST00000339872 ABOP16442 354 aa11.71□□□□□ -0.53
HMGB1-202ENST00000339872 CCL1P22362 96 aa11.71□□□□□ -0.53
HMGB1-202ENST00000339872 NR4A2P43354 598 aa11.71□□□□□ -0.53
HMGB1-202ENST00000339872 ART1P52961 327 aa11.71□□□□□ -0.53
HMGB1-202ENST00000339872 GLYATL3Q5SZD4 288 aa11.71□□□□□ -0.53
HMGB1-202ENST00000339872 BAIAP2L2Q6UXY1 529 aa11.71□□□□□ -0.53
HMGB1-202ENST00000339872 NRARPQ7Z6K4 114 aa11.71□□□□□ -0.53
HMGB1-202ENST00000339872 MED12LQ86YW9 2145 aa11.71□□□□□ -0.53
HMGB1-202ENST00000339872 NKAIN3Q8N8D7 197 aa11.71□□□□□ -0.53
HMGB1-202ENST00000339872 OR5D14Q8NGL3 314 aa11.71□□□□□ -0.53
HMGB1-202ENST00000339872 ZFP3Q96NJ6 502 aa11.71□□□□□ -0.53
HMGB1-202ENST00000339872 TRIB1Q96RU8 372 aa11.71□□□□□ -0.53
HMGB1-202ENST00000339872 KCNK15Q9H427 330 aa11.71□□□□□ -0.53
HMGB1-202ENST00000339872 RHBDL2Q9NX52 303 aa11.71□□□□□ -0.53
HMGB1-202ENST00000339872 PRSS50Q9UI38 385 aa11.71□□□□□ -0.53
HMGB1-202ENST00000339872 WASF3Q9UPY6 502 aa11.71□□□□□ -0.53
HMGB1-202ENST00000339872 OR6C6A6NF89 314 aa11.71□□□□□ -0.54
HMGB1-202ENST00000339872 SDHBP21912 280 aa11.71□□□□□ -0.54
HMGB1-202ENST00000339872 HTR2CP28335 458 aa11.71□□□□□ -0.54
HMGB1-202ENST00000339872 BDKRB2P30411 391 aa11.71□□□□□ -0.54
HMGB1-202ENST00000339872 DDOSTP39656 456 aa11.71□□□□□ -0.54
HMGB1-202ENST00000339872 POU3F4P49335 361 aa11.71□□□□□ -0.54
HMGB1-202ENST00000339872 TPTEP56180 551 aa11.71□□□□□ -0.54
HMGB1-202ENST00000339872 SCAND1P57086 179 aa11.71□□□□□ -0.54
HMGB1-202ENST00000339872 PITPNAQ00169 270 aa11.71□□□□□ -0.54
HMGB1-202ENST00000339872 PLA2G7Q13093 441 aa11.71□□□□□ -0.54
HMGB1-202ENST00000339872 STK11Q15831 433 aa11.71□□□□□ -0.54
HMGB1-202ENST00000339872 RNASE12Q5GAN4 147 aaKnown RBP11.71□□□□□ -0.54
HMGB1-202ENST00000339872 DRAM2Q6UX65 266 aa11.71□□□□□ -0.54
HMGB1-202ENST00000339872 CCBE1Q6UXH8 406 aaPredicted RBP11.71□□□□□ -0.54
HMGB1-202ENST00000339872 SIAH3Q8IW03 269 aa11.71□□□□□ -0.54
HMGB1-202ENST00000339872 SPACA3Q8IXA5 215 aa11.71□□□□□ -0.54
HMGB1-202ENST00000339872 OR1M1Q8NGA1 313 aa11.71□□□□□ -0.54
HMGB1-202ENST00000339872 OR5M9Q8NGP3 310 aa11.71□□□□□ -0.54
HMGB1-202ENST00000339872 RAB40AQ8WXH6 277 aa11.71□□□□□ -0.54
HMGB1-202ENST00000339872 RFT1Q96AA3 541 aa11.71□□□□□ -0.54
HMGB1-202ENST00000339872 FAM3DQ96BQ1 224 aa11.71□□□□□ -0.54
HMGB1-202ENST00000339872 SARAFQ96BY9 339 aa11.71□□□□□ -0.54
HMGB1-202ENST00000339872 S100A16Q96FQ6 103 aaKnown RBP11.71□□□□□ -0.54
HMGB1-202ENST00000339872 LYZL4Q96KX0 146 aa11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms