RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 C19orf43Q9BQ61 176 aa13.06□□□□□ -0.32
COL7A1-201ENST00000328333 CHST6Q9GZX3 395 aa13.06□□□□□ -0.32
COL7A1-201ENST00000328333 LDB3O75112 727 aa13.06□□□□□ -0.32
COL7A1-201ENST00000328333 TSPAN12O95859 305 aa13.06□□□□□ -0.32
COL7A1-201ENST00000328333 PLA1AQ53H76 456 aa13.06□□□□□ -0.32
COL7A1-201ENST00000328333 PLAC9Q5JTB6 97 aa13.06□□□□□ -0.32
COL7A1-201ENST00000328333 STUMQ69YW2 141 aa13.06□□□□□ -0.32
COL7A1-201ENST00000328333 C11orf87Q6NUJ2 197 aa13.06□□□□□ -0.32
COL7A1-201ENST00000328333 ZNF343Q6P1L6 599 aa13.06□□□□□ -0.32
COL7A1-201ENST00000328333 IKZF5Q9H5V7 419 aa13.06□□□□□ -0.32
COL7A1-201ENST00000328333 CMC2Q9NRP2 79 aa13.06□□□□□ -0.32
COL7A1-201ENST00000328333 SLC5A10A0PJK1 596 aa13.05□□□□□ -0.32
COL7A1-201ENST00000328333 TCAPO15273 167 aa13.05□□□□□ -0.32
COL7A1-201ENST00000328333 HLXQ14774 488 aaPredicted RBP13.05□□□□□ -0.32
COL7A1-201ENST00000328333 OR4C16Q8NGL9 310 aa13.05□□□□□ -0.32
COL7A1-201ENST00000328333 FAM3CQ92520 227 aa13.05□□□□□ -0.32
COL7A1-201ENST00000328333 EIF4E2O60573 245 aaKnown RBP13.05□□□□□ -0.32
COL7A1-201ENST00000328333 MIDNQ504T8 468 aa13.05□□□□□ -0.32
COL7A1-201ENST00000328333 XKR7Q5GH72 579 aa13.05□□□□□ -0.32
COL7A1-201ENST00000328333 HSD17B13Q7Z5P4 300 aaPredicted RBP13.05□□□□□ -0.32
COL7A1-201ENST00000328333 ARRDC2Q8TBH0 407 aa13.05□□□□□ -0.32
COL7A1-201ENST00000328333 LCORQ96JN0 433 aaPredicted RBP13.05□□□□□ -0.32
COL7A1-201ENST00000328333 AMBRA1Q9C0C7 1298 aa13.05□□□□□ -0.32
COL7A1-201ENST00000328333 SYPL1Q16563 259 aa13.05□□□□□ -0.32
COL7A1-201ENST00000328333 TMEM176BQ3YBM2 270 aaPredicted RBP13.05□□□□□ -0.32
COL7A1-201ENST00000328333 KCNE4Q8WWG9 221 aa13.05□□□□□ -0.32
COL7A1-201ENST00000328333 FAM210BQ96KR6 192 aa13.05□□□□□ -0.32
COL7A1-201ENST00000328333 RAB40CQ96S21 281 aa13.05□□□□□ -0.32
COL7A1-201ENST00000328333 MRPL22Q9NWU5 206 aaKnown RBP13.05□□□□□ -0.32
COL7A1-201ENST00000328333 HSPB8Q9UJY1 196 aa13.05□□□□□ -0.32
COL7A1-201ENST00000328333 PARP14Q460N5 1801 aa13.05□□□□□ -0.32
COL7A1-201ENST00000328333 RGPD3A6NKT7 1758 aaPredicted RBP13.05□□□□□ -0.32
COL7A1-201ENST00000328333 RGPD4Q7Z3J3 1758 aa13.05□□□□□ -0.32
COL7A1-201ENST00000328333 ZAR1LA6NP61 321 aa13.05□□□□□ -0.32
COL7A1-201ENST00000328333 EXOSC7Q15024 291 aaKnown RBP13.05□□□□□ -0.32
COL7A1-201ENST00000328333 COMMD5Q9GZQ3 224 aa13.05□□□□□ -0.32
COL7A1-201ENST00000328333 BTAF1O14981 1849 aa13.05□□□□□ -0.32
COL7A1-201ENST00000328333 PHF3Q92576 2039 aaKnown RBP13.05□□□□□ -0.32
COL7A1-201ENST00000328333 APEHP13798 732 aaKnown RBP13.05□□□□□ -0.32
COL7A1-201ENST00000328333 SLC39A11Q8N1S5 342 aa13.05□□□□□ -0.32
COL7A1-201ENST00000328333 FBXW5Q969U6 566 aa13.05□□□□□ -0.32
COL7A1-201ENST00000328333 NPAS1Q99742 590 aa13.05□□□□□ -0.32
COL7A1-201ENST00000328333 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.05□□□□□ -0.32
COL7A1-201ENST00000328333 MMP11P24347 488 aa13.05□□□□□ -0.32
COL7A1-201ENST00000328333 ARRB2P32121 409 aa13.05□□□□□ -0.32
COL7A1-201ENST00000328333 PIGPP57054 158 aa13.05□□□□□ -0.32
COL7A1-201ENST00000328333 Q6ZN92 141 aa13.05□□□□□ -0.32
COL7A1-201ENST00000328333 ZNF761Q86XN6 746 aaPredicted RBP13.05□□□□□ -0.32
COL7A1-201ENST00000328333 Q8IYB0 196 aa13.05□□□□□ -0.32
COL7A1-201ENST00000328333 TCEAL8Q8IYN2 117 aa13.05□□□□□ -0.32
COL7A1-201ENST00000328333 DND1Q8IYX4 353 aaKnown RBP13.05□□□□□ -0.32
COL7A1-201ENST00000328333 SMG9Q9H0W8 520 aaKnown RBP13.05□□□□□ -0.32
COL7A1-201ENST00000328333 ARPC3O15145 178 aa13.05□□□□□ -0.32
COL7A1-201ENST00000328333 HOXC11O43248 304 aaPredicted RBP13.05□□□□□ -0.32
COL7A1-201ENST00000328333 SLCO2B1O94956 709 aa13.05□□□□□ -0.32
COL7A1-201ENST00000328333 PIANPQ8IYJ0 282 aa13.05□□□□□ -0.32
COL7A1-201ENST00000328333 GFRA2O00451 464 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 AREGP15514 252 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 GPM6AP51674 278 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 DNAJA3Q96EY1 480 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 CSF3RQ99062 836 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 NARFLQ9H6Q4 476 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 FKBP11Q9NYL4 201 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 KCPQ6ZWJ8 1503 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 DRGXA6NNA5 263 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 ADAMTSL4Q6UY14 1074 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 SLC16A12Q6ZSM3 486 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 ZNF2Q9BSG1 426 aaPredicted RBP13.04□□□□□ -0.32
COL7A1-201ENST00000328333 EDEM2Q9BV94 578 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 AQP6Q13520 282 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 NECAP1Q8NC96 275 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 COPS9Q8WXC6 57 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 NXPE3Q969Y0 559 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 DCAF16Q9NXF7 216 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 TMEM238LA0A1B0GVL6 79 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 A6NJY4 79 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 GP1BAP07359 652 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 CTSAP10619 480 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 GDF1P27539 372 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 YPEL5P62699 121 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 YIPF6Q96EC8 236 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 MACROD1Q9BQ69 325 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 CLEC2DQ9UHP7 191 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 PLXNA1Q9UIW2 1896 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 ZNF236Q9UL36 1845 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 PRSS38A1L453 326 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 CER1O95813 267 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 SULT1A3P0DMM9 295 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 SULT1A4P0DMN0 295 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 SRP9P49458 86 aaKnown RBP13.04□□□□□ -0.32
COL7A1-201ENST00000328333 DLK1P80370 383 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 SMIM12Q96EX1 92 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 TRBV11-1A0A0K0K1C0 115 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 A0A1B0GWA3 101 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 RD3LP0DJH9 198 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 ARR3P36575 388 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 DGCR2P98153 550 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 TRMT12Q53H54 448 aaKnown RBP13.04□□□□□ -0.32
COL7A1-201ENST00000328333 TRIM61Q5EBN2 209 aa13.04□□□□□ -0.32
COL7A1-201ENST00000328333 DCXRQ7Z4W1 244 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms