RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 CAPNS2Q96L46 248 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 RNF167Q9H6Y7 350 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 SLC7A10Q9NS82 523 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 B4GALT7Q9UBV7 327 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 PLAGL1Q9UM63 463 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 IGKV3-7A0A075B6H7 116 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 MED19A0JLT2 244 aaPredicted RBP6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 SLC22A31A6NKX4 558 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 MS4A18H0YCH9 400 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 DDNO94850 711 aaPredicted RBP6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 KLK3P07288 261 aaPredicted RBP6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 PLA2G2AP14555 144 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 PRDX5P30044 214 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 NPY5RQ15761 445 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 MS4A18Q3C1V0 323 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 SBK1Q52WX2 424 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 DND1Q8IYX4 353 aaKnown RBP6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 OR5D18Q8NGL1 313 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 OR11L1Q8NGX0 322 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 ZMYND19Q96E35 227 aaPredicted RBP6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 L3HYPDHQ96EM0 354 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 ZDHHC15Q96MV8 337 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 TINAGQ9UJW2 476 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 GPR132Q9UNW8 380 aa6.99□□□□□ -1.29
LIMCH1-201ENST00000313860 EML2O95834 649 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 NSG1P42857 185 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 NXPH1P58417 271 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 KCNJ10P78508 379 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 TMEM81Q6P7N7 255 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 CPOQ8IVL8 374 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 CNEP1R1Q8N9A8 125 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 OR10X1Q8NGY0 326 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 ALG14Q96F25 216 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 NEIL1Q96FI4 390 aaPredicted RBP6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 ZNF426Q9BUY5 554 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 EPHX3Q9H6B9 360 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 MMP26Q9NRE1 261 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 FBXW11Q9UKB1 542 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 KBTBD11-OT1A0A1B0GTJ5 212 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 SLC38A8A6NNN8 435 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 CLDN34H7C241 214 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 TMPRSS11DO60235 418 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 ALX3O95076 343 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 PRTN3P24158 256 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 MAS1LP35410 378 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 FAM3BP58499 235 aaPredicted RBP6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 MEF2BQ02080 365 aaPredicted RBP6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 OR14A16Q8NHC5 309 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 SLC25A21Q9BQT8 299 aaPredicted RBP6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 SLC25A33Q9BSK2 321 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 BCO2Q9BYV7 579 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 NKX2-4Q9H2Z4 354 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 SEMA6BQ9H3T3 888 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 CLN8Q9UBY8 286 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 MSRAQ9UJ68 235 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 ZNF541Q9H0D2 1346 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 A0A0J9YW62 118 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 A0A1W2PPC4 97 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 DPRXA6NFQ7 191 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 HS3ST1O14792 307 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 TRUB2O95900 331 aaKnown RBP6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 APOC2P02655 101 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 ATP1B3P54709 279 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 SEMG2Q02383 582 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 ZNF91Q05481 1191 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 FZD2Q14332 565 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 VMA21Q3ZAQ7 101 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 FAM57BQ71RH2 274 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 DEFB119Q8N690 84 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 CELF2-AS1Q8N7Q2 184 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 OR2AK2Q8NG84 335 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 ASB9Q96DX5 294 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 ZNF587Q96SQ5 575 aaPredicted RBP6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 TRMOQ9BU70 441 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 FUT9Q9Y231 359 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 SLC27A5Q9Y2P5 690 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 TEX264Q9Y6I9 313 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 A0A1W2PRD5 423 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 A0A1W2PRF3 423 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 A0A1W2PRM7 423 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 GAGE12JA6NER3 117 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 CHKB-CPT1BH3BT56 60 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 NMBRP28336 390 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 GAGE1Q13065 139 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 GAGE4Q13068 117 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 GAGE5Q13069 117 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 GAGE6Q13070 117 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 TMEM198Q66K66 360 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 SLC27A1Q6PCB7 646 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 GLDNQ6ZMI3 551 aaPredicted RBP6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 FCRLAQ7L513 359 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 CAMKMTQ7Z624 323 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 ABHD14AQ9BUJ0 271 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 TMEM147Q9BVK8 224 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 BARHL1Q9BZE3 327 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 ACOT13Q9NPJ3 140 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 WNT16Q9UBV4 365 aa6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 PTRH2Q9Y3E5 179 aaKnown RBP6.98□□□□□ -1.29
LIMCH1-201ENST00000313860 TMEM269A0A1B0GVZ9 245 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms