RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 LOC100506127A0A0U1RQW1 187 aa15.72■□□□□ 0.11
HMGA1-201ENST00000311487 OR6C6A6NF89 314 aa15.72■□□□□ 0.11
HMGA1-201ENST00000311487 DEFB108AA8MXU0 73 aa15.72■□□□□ 0.11
HMGA1-201ENST00000311487 MYL12BO14950 172 aa15.72■□□□□ 0.11
HMGA1-201ENST00000311487 IGLV1-44P01699 117 aa15.72■□□□□ 0.11
HMGA1-201ENST00000311487 H2BFMP0C1H6 154 aa15.72■□□□□ 0.11
HMGA1-201ENST00000311487 PSMB10P40306 273 aa15.72■□□□□ 0.11
HMGA1-201ENST00000311487 OPRL1P41146 370 aa15.72■□□□□ 0.11
HMGA1-201ENST00000311487 NAAAQ02083 359 aa15.72■□□□□ 0.11
HMGA1-201ENST00000311487 TMED1Q13445 227 aa15.72■□□□□ 0.11
HMGA1-201ENST00000311487 VHLLQ6RSH7 139 aa15.72■□□□□ 0.11
HMGA1-201ENST00000311487 SLC22A25Q6T423 547 aa15.72■□□□□ 0.11
HMGA1-201ENST00000311487 HIST2H2ABQ8IUE6 130 aaPredicted RBP15.72■□□□□ 0.11
HMGA1-201ENST00000311487 RNF133Q8WVZ7 376 aa15.72■□□□□ 0.11
HMGA1-201ENST00000311487 BORCS5Q969J3 196 aa15.72■□□□□ 0.11
HMGA1-201ENST00000311487 PPP1R14AQ96A00 147 aa15.72■□□□□ 0.11
HMGA1-201ENST00000311487 POM121L2Q96KW2 1035 aa15.72■□□□□ 0.11
HMGA1-201ENST00000311487 CHCHD6Q9BRQ6 235 aa15.72■□□□□ 0.11
HMGA1-201ENST00000311487 ALG8Q9BVK2 526 aa15.72■□□□□ 0.11
HMGA1-201ENST00000311487 SLIRPQ9GZT3 109 aaKnown RBP15.72■□□□□ 0.11
HMGA1-201ENST00000311487 ERVK13-1Q9NX77 482 aa15.72■□□□□ 0.11
HMGA1-201ENST00000311487 MRM2Q9UI43 246 aaKnown RBP15.72■□□□□ 0.11
HMGA1-201ENST00000311487 IGHV2OR16-5A0A0B4J2B6 119 aa15.72■□□□□ 0.11
HMGA1-201ENST00000311487 J3QLW9 94 aa15.72■□□□□ 0.11
HMGA1-201ENST00000311487 NGFP01138 241 aa15.72■□□□□ 0.11
HMGA1-201ENST00000311487 ZNF19P17023 458 aa15.72■□□□□ 0.11
HMGA1-201ENST00000311487 CRYGSP22914 178 aa15.72■□□□□ 0.11
HMGA1-201ENST00000311487 HSD11B1P28845 292 aa15.72■□□□□ 0.11
HMGA1-201ENST00000311487 WNT5AP41221 380 aa15.72■□□□□ 0.11
HMGA1-201ENST00000311487 GDI2P50395 445 aaKnown RBP15.72■□□□□ 0.11
HMGA1-201ENST00000311487 ERVS71-1P61550 626 aa15.72■□□□□ 0.11
HMGA1-201ENST00000311487 SPATA46Q5T0L3 261 aa15.72■□□□□ 0.11
HMGA1-201ENST00000311487 TMEM108Q6UXF1 575 aa15.72■□□□□ 0.11
HMGA1-201ENST00000311487 USP43Q70EL4 1123 aa15.72■□□□□ 0.11
HMGA1-201ENST00000311487 CROCCP3Q8IVE0 287 aa15.72■□□□□ 0.11
HMGA1-201ENST00000311487 YIPF7Q8N8F6 280 aa15.72■□□□□ 0.11
HMGA1-201ENST00000311487 ZNF454Q8N9F8 522 aa15.72■□□□□ 0.11
HMGA1-201ENST00000311487 ZNF649Q9BS31 505 aa15.72■□□□□ 0.11
HMGA1-201ENST00000311487 CENPOQ9BU64 300 aa15.72■□□□□ 0.11
HMGA1-201ENST00000311487 RNF167Q9H6Y7 350 aa15.72■□□□□ 0.11
HMGA1-201ENST00000311487 CRNNQ9UBG3 495 aaPredicted RBP15.72■□□□□ 0.11
HMGA1-201ENST00000311487 FZR1Q9UM11 496 aa15.72■□□□□ 0.11
HMGA1-201ENST00000311487 GTF2A1LQ9UNN4 478 aa15.72■□□□□ 0.11
HMGA1-201ENST00000311487 ZNF878C9JN71 531 aa15.71■□□□□ 0.11
HMGA1-201ENST00000311487 H3BSH0 61 aa15.71■□□□□ 0.11
HMGA1-201ENST00000311487 LIMS3P0CW19 117 aa15.71■□□□□ 0.11
HMGA1-201ENST00000311487 LIMS4P0CW20 117 aa15.71■□□□□ 0.11
HMGA1-201ENST00000311487 SERPINB10P48595 397 aa15.71■□□□□ 0.11
HMGA1-201ENST00000311487 TBC1D28Q2M2D7 210 aa15.71■□□□□ 0.11
HMGA1-201ENST00000311487 ODF4Q2M2E3 257 aa15.71■□□□□ 0.11
HMGA1-201ENST00000311487 LINC00299Q6ZSB3 139 aa15.71■□□□□ 0.11
HMGA1-201ENST00000311487 KBTBD8Q8NFY9 601 aa15.71■□□□□ 0.11
HMGA1-201ENST00000311487 C4orf36Q96KX1 117 aa15.71■□□□□ 0.11
HMGA1-201ENST00000311487 USB1Q9BQ65 265 aaKnown RBP15.71■□□□□ 0.11
HMGA1-201ENST00000311487 MROQ9BYG7 248 aa15.71■□□□□ 0.11
HMGA1-201ENST00000311487 HDHD2Q9H0R4 259 aa15.71■□□□□ 0.11
HMGA1-201ENST00000311487 ACOXLQ9NUZ1 547 aa15.71■□□□□ 0.11
HMGA1-201ENST00000311487 TMEM14AQ9Y6G1 99 aa15.71■□□□□ 0.11
HMGA1-201ENST00000311487 IGHA1P01876 353 aa15.7■□□□□ 0.1
HMGA1-201ENST00000311487 COX6B1P14854 86 aa15.7■□□□□ 0.1
HMGA1-201ENST00000311487 MLLT11Q13015 90 aaPredicted RBP15.7■□□□□ 0.1
HMGA1-201ENST00000311487 TIMM50Q3ZCQ8 353 aa15.7■□□□□ 0.1
HMGA1-201ENST00000311487 NCMAPQ5T1S8 102 aa15.7■□□□□ 0.1
HMGA1-201ENST00000311487 C1QTNF12Q5T7M4 302 aa15.7■□□□□ 0.1
HMGA1-201ENST00000311487 DPPA2Q7Z7J5 298 aa15.7■□□□□ 0.1
HMGA1-201ENST00000311487 ZNF283Q8N7M2 679 aa15.7■□□□□ 0.1
HMGA1-201ENST00000311487 GATAD2BQ8WXI9 593 aa15.7■□□□□ 0.1
HMGA1-201ENST00000311487 OR8B4Q96RC9 309 aa15.7■□□□□ 0.1
HMGA1-201ENST00000311487 ESRP2Q9H6T0 727 aaKnown RBP15.7■□□□□ 0.1
HMGA1-201ENST00000311487 CDH20Q9HBT6 801 aa15.7■□□□□ 0.1
HMGA1-201ENST00000311487 AKAP6Q13023 2319 aa15.7■□□□□ 0.1
HMGA1-201ENST00000311487 A0A1W2PPR1 153 aa15.7■□□□□ 0.1
HMGA1-201ENST00000311487 CRYAAP02489 173 aa15.7■□□□□ 0.1
HMGA1-201ENST00000311487 ZNF35P13682 527 aa15.7■□□□□ 0.1
HMGA1-201ENST00000311487 MYL12AP19105 171 aa15.7■□□□□ 0.1
HMGA1-201ENST00000311487 CX3CR1P49238 355 aa15.7■□□□□ 0.1
HMGA1-201ENST00000311487 MFGE8Q08431 387 aaPredicted RBP15.7■□□□□ 0.1
HMGA1-201ENST00000311487 GFOD2Q3B7J2 385 aa15.7■□□□□ 0.1
HMGA1-201ENST00000311487 NGBQ9NPG2 151 aa15.7■□□□□ 0.1
HMGA1-201ENST00000311487 AKIP1Q9NQ31 210 aa15.7■□□□□ 0.1
HMGA1-201ENST00000311487 POU2F3Q9UKI9 436 aa15.7■□□□□ 0.1
HMGA1-201ENST00000311487 EXOSC1Q9Y3B2 195 aaKnown RBP15.7■□□□□ 0.1
HMGA1-201ENST00000311487 TMEM129A0AVI4 362 aa15.69■□□□□ 0.1
HMGA1-201ENST00000311487 J3QRK9 145 aa15.69■□□□□ 0.1
HMGA1-201ENST00000311487 M0R135 149 aa15.69■□□□□ 0.1
HMGA1-201ENST00000311487 GPRIN2O60269 458 aa15.69■□□□□ 0.1
HMGA1-201ENST00000311487 GPX5O75715 221 aa15.69■□□□□ 0.1
HMGA1-201ENST00000311487 PNPP00491 289 aa15.69■□□□□ 0.1
HMGA1-201ENST00000311487 ANXA2P07355 339 aaKnown RBP15.69■□□□□ 0.1
HMGA1-201ENST00000311487 WNT4P56705 351 aa15.69■□□□□ 0.1
HMGA1-201ENST00000311487 GALEQ14376 348 aa15.69■□□□□ 0.1
HMGA1-201ENST00000311487 SNAI3Q3KNW1 292 aa15.69■□□□□ 0.1
HMGA1-201ENST00000311487 KCTD18Q6PI47 426 aaPredicted RBP15.69■□□□□ 0.1
HMGA1-201ENST00000311487 ZNF679Q8IYX0 411 aa15.69■□□□□ 0.1
HMGA1-201ENST00000311487 OR6Q1Q8NGQ2 317 aa15.69■□□□□ 0.1
HMGA1-201ENST00000311487 ABHD4Q8TB40 342 aa15.69■□□□□ 0.1
HMGA1-201ENST00000311487 FAM222BQ8WU58 562 aa15.69■□□□□ 0.1
HMGA1-201ENST00000311487 ZNF799Q96GE5 643 aa15.69■□□□□ 0.1
HMGA1-201ENST00000311487 C4orf45Q96LM5 186 aa15.69■□□□□ 0.1
HMGA1-201ENST00000311487 KCNS3Q9BQ31 491 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms