RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 RUSC1-AS1Q66K80 236 aa12.26□□□□□ -0.45
CCDC88B-201ENST00000301897 LYPD2Q6UXB3 125 aa12.26□□□□□ -0.45
CCDC88B-201ENST00000301897 GDPGP1Q6ZNW5 385 aa12.26□□□□□ -0.45
CCDC88B-201ENST00000301897 CYP4Z1Q86W10 505 aa12.26□□□□□ -0.45
CCDC88B-201ENST00000301897 LDLRAD3Q86YD5 345 aa12.26□□□□□ -0.45
CCDC88B-201ENST00000301897 LINC01006Q8NI28 216 aa12.26□□□□□ -0.45
CCDC88B-201ENST00000301897 NRIP3Q9NQ35 241 aa12.26□□□□□ -0.45
CCDC88B-201ENST00000301897 RHCGQ9UBD6 479 aa12.26□□□□□ -0.45
CCDC88B-201ENST00000301897 RNF7Q9UBF6 113 aa12.26□□□□□ -0.45
CCDC88B-201ENST00000301897 TMCC3Q9ULS5 477 aa12.26□□□□□ -0.45
CCDC88B-201ENST00000301897 ZNF281Q9Y2X9 895 aa12.26□□□□□ -0.45
CCDC88B-201ENST00000301897 TRAV38-1A0A0B4J264 116 aa12.25□□□□□ -0.45
CCDC88B-201ENST00000301897 IGHV1-69DA0A0B4J2H0 117 aa12.25□□□□□ -0.45
CCDC88B-201ENST00000301897 LGALS8O00214 317 aa12.25□□□□□ -0.45
CCDC88B-201ENST00000301897 FFAR1O14842 300 aa12.25□□□□□ -0.45
CCDC88B-201ENST00000301897 GPR137BO60478 399 aa12.25□□□□□ -0.45
CCDC88B-201ENST00000301897 ECDO95905 644 aaPredicted RBP12.25□□□□□ -0.45
CCDC88B-201ENST00000301897 IGHV1-69P01742 117 aa12.25□□□□□ -0.45
CCDC88B-201ENST00000301897 HLA-DPB1P04440 258 aa12.25□□□□□ -0.45
CCDC88B-201ENST00000301897 ZNF26P17031 533 aaPredicted RBP12.25□□□□□ -0.45
CCDC88B-201ENST00000301897 RPS6KA3P51812 740 aa12.25□□□□□ -0.45
CCDC88B-201ENST00000301897 PROK1P58294 105 aa12.25□□□□□ -0.45
CCDC88B-201ENST00000301897 COX10Q12887 443 aa12.25□□□□□ -0.45
CCDC88B-201ENST00000301897 MAB21L1Q13394 359 aa12.25□□□□□ -0.45
CCDC88B-201ENST00000301897 OR8G1Q15617 311 aa12.25□□□□□ -0.45
CCDC88B-201ENST00000301897 C2orf68Q2NKX9 166 aa12.25□□□□□ -0.45
CCDC88B-201ENST00000301897 IFI44LQ53G44 452 aa12.25□□□□□ -0.45
CCDC88B-201ENST00000301897 CLEC12AQ5QGZ9 265 aa12.25□□□□□ -0.45
CCDC88B-201ENST00000301897 VTCN1Q7Z7D3 282 aa12.25□□□□□ -0.45
CCDC88B-201ENST00000301897 SPRYD4Q8WW59 207 aaPredicted RBP12.25□□□□□ -0.45
CCDC88B-201ENST00000301897 TBX15Q96SF7 602 aa12.25□□□□□ -0.45
CCDC88B-201ENST00000301897 NUAK2Q9H093 628 aa12.25□□□□□ -0.45
CCDC88B-201ENST00000301897 KRCC1Q9NPI7 259 aaPredicted RBP12.25□□□□□ -0.45
CCDC88B-201ENST00000301897 SIGLEC7Q9Y286 467 aa12.25□□□□□ -0.45
CCDC88B-201ENST00000301897 SNX13Q9Y5W8 968 aa12.25□□□□□ -0.45
CCDC88B-201ENST00000301897 LHFPL6Q9Y693 200 aa12.25□□□□□ -0.45
CCDC88B-201ENST00000301897 HMGB1P1B2RPK0 211 aaPredicted RBP12.24□□□□□ -0.45
CCDC88B-201ENST00000301897 J3KTA2 159 aa12.24□□□□□ -0.45
CCDC88B-201ENST00000301897 SOCS2O14508 198 aa12.24□□□□□ -0.45
CCDC88B-201ENST00000301897 GMDSO60547 372 aa12.24□□□□□ -0.45
CCDC88B-201ENST00000301897 PTP4A3O75365 173 aa12.24□□□□□ -0.45
CCDC88B-201ENST00000301897 TXNDC12O95881 172 aa12.24□□□□□ -0.45
CCDC88B-201ENST00000301897 CENPAP49450 140 aa12.24□□□□□ -0.45
CCDC88B-201ENST00000301897 MZT1Q08AG7 82 aa12.24□□□□□ -0.45
CCDC88B-201ENST00000301897 KLF10Q13118 480 aa12.24□□□□□ -0.45
CCDC88B-201ENST00000301897 GK2Q14410 553 aaPredicted RBP12.24□□□□□ -0.45
CCDC88B-201ENST00000301897 KRTAP27-1Q3LI81 207 aa12.24□□□□□ -0.45
CCDC88B-201ENST00000301897 SLC36A3Q495N2 470 aa12.24□□□□□ -0.45
CCDC88B-201ENST00000301897 TBPL2Q6SJ96 375 aa12.24□□□□□ -0.45
CCDC88B-201ENST00000301897 DPY19L2P2Q6ZN68 376 aa12.24□□□□□ -0.45
CCDC88B-201ENST00000301897 PGAP1Q75T13 922 aa12.24□□□□□ -0.45
CCDC88B-201ENST00000301897 ARPINQ7Z6K5 226 aa12.24□□□□□ -0.45
CCDC88B-201ENST00000301897 SCCPDHQ8NBX0 429 aa12.24□□□□□ -0.45
CCDC88B-201ENST00000301897 WDR76Q9H967 626 aa12.24□□□□□ -0.45
CCDC88B-201ENST00000301897 UFSP2Q9NUQ7 469 aa12.24□□□□□ -0.45
CCDC88B-201ENST00000301897 RPS6KA6Q9UK32 745 aa12.24□□□□□ -0.45
CCDC88B-201ENST00000301897 CAB39Q9Y376 341 aaPredicted RBP12.24□□□□□ -0.45
CCDC88B-201ENST00000301897 A0A1W2PRQ8 180 aa12.23□□□□□ -0.45
CCDC88B-201ENST00000301897 BTBD17A6NE02 478 aa12.23□□□□□ -0.45
CCDC88B-201ENST00000301897 ADAM20O43506 726 aa12.23□□□□□ -0.45
CCDC88B-201ENST00000301897 PTBP3O95758 552 aaKnown RBP12.23□□□□□ -0.45
CCDC88B-201ENST00000301897 ZNF682O95780 498 aa12.23□□□□□ -0.45
CCDC88B-201ENST00000301897 ACSM4P0C7M7 580 aa12.23□□□□□ -0.45
CCDC88B-201ENST00000301897 IER3P46695 156 aa12.23□□□□□ -0.45
CCDC88B-201ENST00000301897 KRTAP10-3P60369 221 aa12.23□□□□□ -0.45
CCDC88B-201ENST00000301897 DGCR6Q14129 220 aa12.23□□□□□ -0.45
CCDC88B-201ENST00000301897 OR8B8Q15620 311 aa12.23□□□□□ -0.45
CCDC88B-201ENST00000301897 FKBP9P1Q75LS8 142 aa12.23□□□□□ -0.45
CCDC88B-201ENST00000301897 MRPL21Q7Z2W9 205 aaKnown RBP12.23□□□□□ -0.45
CCDC88B-201ENST00000301897 SPERTQ8NA61 448 aa12.23□□□□□ -0.45
CCDC88B-201ENST00000301897 ZSCAN4Q8NAM6 433 aaPredicted RBP12.23□□□□□ -0.45
CCDC88B-201ENST00000301897 OR2AJ1Q8NGZ0 328 aa12.23□□□□□ -0.45
CCDC88B-201ENST00000301897 SLC7A13Q8TCU3 470 aa12.23□□□□□ -0.45
CCDC88B-201ENST00000301897 NPRL2Q8WTW4 380 aa12.23□□□□□ -0.45
CCDC88B-201ENST00000301897 LHX4Q969G2 390 aa12.23□□□□□ -0.45
CCDC88B-201ENST00000301897 FAM46AQ96IP4 442 aaKnown RBP12.23□□□□□ -0.45
CCDC88B-201ENST00000301897 DMRTB1Q96MA1 342 aa12.23□□□□□ -0.45
CCDC88B-201ENST00000301897 PITX2Q99697 317 aa12.23□□□□□ -0.45
CCDC88B-201ENST00000301897 ATF6BQ99941 703 aa12.23□□□□□ -0.45
CCDC88B-201ENST00000301897 TMEM120AQ9BXJ8 343 aa12.23□□□□□ -0.45
CCDC88B-201ENST00000301897 SIRPDQ9H106 197 aa12.23□□□□□ -0.45
CCDC88B-201ENST00000301897 C16orf95Q9H693 158 aa12.23□□□□□ -0.45
CCDC88B-201ENST00000301897 CTSZQ9UBR2 303 aa12.23□□□□□ -0.45
CCDC88B-201ENST00000301897 AURKCQ9UQB9 309 aa12.23□□□□□ -0.45
CCDC88B-201ENST00000301897 FAM96BQ9Y3D0 163 aa12.23□□□□□ -0.45
CCDC88B-201ENST00000301897 IER3IP1Q9Y5U9 82 aa12.23□□□□□ -0.45
CCDC88B-201ENST00000301897 C5orf63A6NC05 138 aa12.22□□□□□ -0.45
CCDC88B-201ENST00000301897 OOEPA6NGQ2 149 aa12.22□□□□□ -0.45
CCDC88B-201ENST00000301897 F5H5K5 113 aa12.22□□□□□ -0.45
CCDC88B-201ENST00000301897 IGHV4-59P01825 116 aa12.22□□□□□ -0.45
CCDC88B-201ENST00000301897 LCATP04180 440 aa12.22□□□□□ -0.45
CCDC88B-201ENST00000301897 MDH1P40925 334 aaKnown RBP12.22□□□□□ -0.45
CCDC88B-201ENST00000301897 CDKN2AP42771 156 aaKnown RBP12.22□□□□□ -0.45
CCDC88B-201ENST00000301897 TPTEP56180 551 aa12.22□□□□□ -0.45
CCDC88B-201ENST00000301897 MPPED2Q15777 294 aa12.22□□□□□ -0.45
CCDC88B-201ENST00000301897 RSPO1Q2MKA7 263 aaPredicted RBP12.22□□□□□ -0.45
CCDC88B-201ENST00000301897 PRAMEF6Q5VXH4 476 aa12.22□□□□□ -0.45
CCDC88B-201ENST00000301897 OTPQ5XKR4 325 aa12.22□□□□□ -0.45
CCDC88B-201ENST00000301897 CORO6Q6QEF8 472 aa12.22□□□□□ -0.45
CCDC88B-201ENST00000301897 PTCHD4Q6ZW05 846 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms