RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 KCTD18Q6PI47 426 aaPredicted RBP8.97□□□□□ -0.97
LIG3-201ENST00000262327 BEND4Q6ZU67 534 aa8.97□□□□□ -0.97
LIG3-201ENST00000262327 ADGRE4PQ86SQ3 457 aa8.97□□□□□ -0.97
LIG3-201ENST00000262327 OR52N4Q8NGI2 321 aa8.97□□□□□ -0.97
LIG3-201ENST00000262327 ZNF519Q8TB69 540 aa8.97□□□□□ -0.97
LIG3-201ENST00000262327 ZNF721Q8TF20 911 aa8.97□□□□□ -0.97
LIG3-201ENST00000262327 ZNF285Q96NJ3 590 aa8.97□□□□□ -0.97
LIG3-201ENST00000262327 SLC46A1Q96NT5 459 aa8.97□□□□□ -0.97
LIG3-201ENST00000262327 NIT2Q9NQR4 276 aa8.97□□□□□ -0.97
LIG3-201ENST00000262327 SLC22A11Q9NSA0 550 aa8.97□□□□□ -0.97
LIG3-201ENST00000262327 ASF1BQ9NVP2 202 aa8.97□□□□□ -0.97
LIG3-201ENST00000262327 UPB1Q9UBR1 384 aa8.97□□□□□ -0.97
LIG3-201ENST00000262327 OR52A1Q9UKL2 312 aa8.97□□□□□ -0.97
LIG3-201ENST00000262327 CELSR3Q9NYQ7 3312 aa8.97□□□□□ -0.97
LIG3-201ENST00000262327 SPAG17Q6Q759 2223 aa8.97□□□□□ -0.97
LIG3-201ENST00000262327 F12P00748 615 aaPredicted RBP8.97□□□□□ -0.97
LIG3-201ENST00000262327 TDGF1P13385 188 aa8.97□□□□□ -0.97
LIG3-201ENST00000262327 NME1P15531 152 aaKnown RBP8.97□□□□□ -0.97
LIG3-201ENST00000262327 ZNF823P16415 610 aa8.97□□□□□ -0.97
LIG3-201ENST00000262327 BCKDHBP21953 392 aa8.97□□□□□ -0.97
LIG3-201ENST00000262327 HRH1P35367 487 aa8.97□□□□□ -0.97
LIG3-201ENST00000262327 CD96P40200 585 aa8.97□□□□□ -0.97
LIG3-201ENST00000262327 SERTAD2Q14140 314 aa8.97□□□□□ -0.97
LIG3-201ENST00000262327 GFOD2Q3B7J2 385 aa8.97□□□□□ -0.97
LIG3-201ENST00000262327 OR2W3Q7Z3T1 314 aa8.97□□□□□ -0.97
LIG3-201ENST00000262327 HSD17B13Q7Z5P4 300 aaPredicted RBP8.97□□□□□ -0.97
LIG3-201ENST00000262327 TMEM229BQ8NBD8 167 aa8.97□□□□□ -0.97
LIG3-201ENST00000262327 OR5M8Q8NGP6 311 aa8.97□□□□□ -0.97
LIG3-201ENST00000262327 OR52N5Q8NH56 324 aa8.97□□□□□ -0.97
LIG3-201ENST00000262327 MRGPRFQ96AM1 343 aa8.97□□□□□ -0.97
LIG3-201ENST00000262327 SELENOIQ9C0D9 397 aa8.97□□□□□ -0.97
LIG3-201ENST00000262327 TXNIPQ9H3M7 391 aa8.97□□□□□ -0.97
LIG3-201ENST00000262327 PDE7BQ9NP56 450 aa8.97□□□□□ -0.97
LIG3-201ENST00000262327 CUTCQ9NTM9 273 aa8.97□□□□□ -0.97
LIG3-201ENST00000262327 HHLA2Q9UM44 414 aa8.97□□□□□ -0.97
LIG3-201ENST00000262327 SLC5A6Q9Y289 635 aa8.97□□□□□ -0.97
LIG3-201ENST00000262327 RNF222A6NCQ9 220 aa8.96□□□□□ -0.97
LIG3-201ENST00000262327 C5orf51A6NDU8 294 aa8.96□□□□□ -0.97
LIG3-201ENST00000262327 GUSBP08236 651 aa8.96□□□□□ -0.97
LIG3-201ENST00000262327 IFI6P09912 130 aa8.96□□□□□ -0.97
LIG3-201ENST00000262327 ABCD3P28288 659 aa8.96□□□□□ -0.97
LIG3-201ENST00000262327 CALCRP30988 508 aa8.96□□□□□ -0.97
LIG3-201ENST00000262327 NXPH1P58417 271 aa8.96□□□□□ -0.97
LIG3-201ENST00000262327 IL13RA1P78552 427 aa8.96□□□□□ -0.97
LIG3-201ENST00000262327 EBPQ15125 230 aaKnown RBP8.96□□□□□ -0.97
LIG3-201ENST00000262327 ELOCQ15369 112 aa8.96□□□□□ -0.97
LIG3-201ENST00000262327 SGCBQ16585 318 aa8.96□□□□□ -0.97
LIG3-201ENST00000262327 RNASE10Q5GAN6 216 aaKnown RBP8.96□□□□□ -0.97
LIG3-201ENST00000262327 C11orf87Q6NUJ2 197 aa8.96□□□□□ -0.97
LIG3-201ENST00000262327 STX12Q86Y82 276 aa8.96□□□□□ -0.97
LIG3-201ENST00000262327 HIST2H2ABQ8IUE6 130 aaPredicted RBP8.96□□□□□ -0.97
LIG3-201ENST00000262327 OR1S2Q8NGQ3 325 aa8.96□□□□□ -0.97
LIG3-201ENST00000262327 OR13C9Q8NGT0 318 aa8.96□□□□□ -0.97
LIG3-201ENST00000262327 EDARADDQ8WWZ3 215 aa8.96□□□□□ -0.97
LIG3-201ENST00000262327 ZNF251Q9BRH9 671 aa8.96□□□□□ -0.97
LIG3-201ENST00000262327 NICN1Q9BSH3 213 aa8.96□□□□□ -0.97
LIG3-201ENST00000262327 TMEM231Q9H6L2 316 aa8.96□□□□□ -0.97
LIG3-201ENST00000262327 PURGQ9UJV8 347 aaKnown RBP8.96□□□□□ -0.97
LIG3-201ENST00000262327 OR2AT4A6NND4 320 aa8.96□□□□□ -0.98
LIG3-201ENST00000262327 GPR31O00270 319 aa8.96□□□□□ -0.98
LIG3-201ENST00000262327 PLPP3O14495 311 aa8.96□□□□□ -0.98
LIG3-201ENST00000262327 PHYHO14832 338 aa8.96□□□□□ -0.98
LIG3-201ENST00000262327 TO15178 435 aa8.96□□□□□ -0.98
LIG3-201ENST00000262327 AQP8O94778 261 aa8.96□□□□□ -0.98
LIG3-201ENST00000262327 ERCC1P07992 297 aaPredicted RBP8.96□□□□□ -0.98
LIG3-201ENST00000262327 SFTPCP11686 197 aa8.96□□□□□ -0.98
LIG3-201ENST00000262327 MGMTP16455 207 aa8.96□□□□□ -0.98
LIG3-201ENST00000262327 PGCP20142 388 aa8.96□□□□□ -0.98
LIG3-201ENST00000262327 ANOS1P23352 680 aa8.96□□□□□ -0.98
LIG3-201ENST00000262327 GABRA4P48169 554 aa8.96□□□□□ -0.98
LIG3-201ENST00000262327 POU3F1Q03052 451 aaPredicted RBP8.96□□□□□ -0.98
LIG3-201ENST00000262327 GLO1Q04760 184 aa8.96□□□□□ -0.98
LIG3-201ENST00000262327 FGL1Q08830 312 aa8.96□□□□□ -0.98
LIG3-201ENST00000262327 COX15Q7KZN9 410 aa8.96□□□□□ -0.98
LIG3-201ENST00000262327 BHLHE23Q8NDY6 225 aa8.96□□□□□ -0.98
LIG3-201ENST00000262327 ZC3H10Q96K80 434 aaKnown RBP8.96□□□□□ -0.98
LIG3-201ENST00000262327 PAPOLGQ9BWT3 736 aaKnown RBP8.96□□□□□ -0.98
LIG3-201ENST00000262327 C1orf198Q9H425 327 aa8.96□□□□□ -0.98
LIG3-201ENST00000262327 G6PC2Q9NQR9 355 aa8.96□□□□□ -0.98
LIG3-201ENST00000262327 RASL12Q9NYN1 266 aa8.96□□□□□ -0.98
LIG3-201ENST00000262327 GDF2Q9UK05 429 aaPredicted RBP8.96□□□□□ -0.98
LIG3-201ENST00000262327 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa8.96□□□□□ -0.98
LIG3-201ENST00000262327 FRG2CA6NGY1 282 aa8.96□□□□□ -0.98
LIG3-201ENST00000262327 LAMTOR5O43504 91 aa8.96□□□□□ -0.98
LIG3-201ENST00000262327 EIF4E2O60573 245 aaKnown RBP8.96□□□□□ -0.98
LIG3-201ENST00000262327 AHSA1O95433 338 aa8.96□□□□□ -0.98
LIG3-201ENST00000262327 IGKV3-11P04433 115 aa8.96□□□□□ -0.98
LIG3-201ENST00000262327 UNC119Q13432 240 aa8.96□□□□□ -0.98
LIG3-201ENST00000262327 MPPED2Q15777 294 aa8.96□□□□□ -0.98
LIG3-201ENST00000262327 COMMD2Q86X83 199 aa8.96□□□□□ -0.98
LIG3-201ENST00000262327 GKN2Q86XP6 184 aa8.96□□□□□ -0.98
LIG3-201ENST00000262327 SFT2D1Q8WV19 159 aa8.96□□□□□ -0.98
LIG3-201ENST00000262327 ASB17Q8WXJ9 295 aa8.96□□□□□ -0.98
LIG3-201ENST00000262327 TCEAL3Q969E4 200 aa8.96□□□□□ -0.98
LIG3-201ENST00000262327 ADAT3Q96EY9 351 aaPredicted RBP8.96□□□□□ -0.98
LIG3-201ENST00000262327 MED9Q9NWA0 146 aa8.96□□□□□ -0.98
LIG3-201ENST00000262327 NDRG3Q9UGV2 375 aa8.96□□□□□ -0.98
LIG3-201ENST00000262327 GPN3Q9UHW5 284 aaPredicted RBP8.96□□□□□ -0.98
LIG3-201ENST00000262327 TNFSF18Q9UNG2 199 aa8.96□□□□□ -0.98
LIG3-201ENST00000262327 KCNK7Q9Y2U2 307 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms