RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 AQP10Q96PS8 301 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 PARD6GQ9BYG4 376 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-220ENST00000641603 CHST2Q9Y4C5 530 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 SOCS6O14544 535 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 ERVFC1-1P60608 527 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 DUSP8Q13202 625 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 PLPPR5Q32ZL2 321 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 ZNF528Q3MIS6 628 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 TCTN3Q6NUS6 607 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 MS4A8Q9BY19 250 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 PBX4Q9BYU1 374 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 CHST8Q9H2A9 424 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 FKRPQ9H9S5 495 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 ZFP64Q9NPA5 681 aa4.26□□□□□ -1.73
SCN1A-220ENST00000641603 PEF1Q9UBV8 284 aaKnown RBP4.26□□□□□ -1.73
SCN1A-220ENST00000641603 CRISP2P16562 243 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 CNN1P51911 297 aaKnown RBP4.25□□□□□ -1.73
SCN1A-220ENST00000641603 PDGFRLQ15198 375 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 JMJD6Q6NYC1 403 aaPredicted RBP4.25□□□□□ -1.73
SCN1A-220ENST00000641603 FAM129CQ86XR2 697 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 MKXQ8IYA7 352 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 POM121Q96HA1 1249 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 DUSP11O75319 330 aaKnown RBP4.25□□□□□ -1.73
SCN1A-220ENST00000641603 GAB1Q13480 694 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 C21orf62-AS1Q17RA5 79 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 FAM110CQ1W6H9 321 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 NDRG1Q92597 394 aaKnown RBP4.25□□□□□ -1.73
SCN1A-220ENST00000641603 ARRDC3Q96B67 414 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 UTP23Q9BRU9 249 aaKnown RBP4.25□□□□□ -1.73
SCN1A-220ENST00000641603 PRRG4Q9BZD6 226 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 TRBV5-3A0A0A0MS03 114 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 C9orf170A2RU37 121 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 C4orf47A7E2U8 309 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 TMX2-CTNND1H3BSU7 103 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 WNT1P04628 370 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 HOXB3P14651 431 aaPredicted RBP4.25□□□□□ -1.73
SCN1A-220ENST00000641603 OLIG2Q13516 323 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 ODF4Q2M2E3 257 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 PDZD11Q5EBL8 140 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 LRRC18Q8N456 261 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 OR9A2Q8NGT5 310 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 SCAMP5Q8TAC9 235 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 RPS4Y2Q8TD47 263 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 ST6GALNAC5Q9BVH7 336 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 NTMQ9P121 344 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 A4GNTQ9UNA3 340 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 PCDHGA9Q9Y5G4 932 aaKnown RBP4.25□□□□□ -1.73
SCN1A-220ENST00000641603 A0A0U1RQF3 1178 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 A0A0U1RQK1 487 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 TCRBV21S2A2A0A5A6 115 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 ZNF320A2RRD8 509 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 SEMA7AO75326 666 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 GPR75O95800 540 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 HKR1P10072 659 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 ADH5P11766 374 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 NID1P14543 1247 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 ZNF16P17020 682 aaPredicted RBP4.25□□□□□ -1.73
SCN1A-220ENST00000641603 ZNF385CQ66K41 422 aaPredicted RBP4.25□□□□□ -1.73
SCN1A-220ENST00000641603 ZNF595Q8IYB9 648 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 IL22RA1Q8N6P7 574 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 ARSGQ96EG1 525 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 ZNF845Q96IR2 970 aaPredicted RBP4.25□□□□□ -1.73
SCN1A-220ENST00000641603 SOX7Q9BT81 388 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 FAAP24Q9BTP7 215 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 SELENOIQ9C0D9 397 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 SEMA6CQ9H3T2 930 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 RNF167Q9H6Y7 350 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 CDH20Q9HBT6 801 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 HINT3Q9NQE9 182 aaKnown RBP4.25□□□□□ -1.73
SCN1A-220ENST00000641603 KLRF1Q9NZS2 232 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 TMED7Q9Y3B3 224 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 WIPI2Q9Y4P8 454 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 LRP5O75197 1615 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 A0A1B0GV50 99 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 IGLON5A6NGN9 336 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 MSX1P28360 303 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 DCTDP32321 178 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 OR8B8Q15620 311 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 HFEQ30201 348 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 PRSS36Q5K4E3 855 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 OR1P1Q8NH06 330 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 FAM174AQ8TBP5 190 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 MRPS24Q96EL2 167 aaKnown RBP4.25□□□□□ -1.73
SCN1A-220ENST00000641603 ADGRL4Q9HBW9 690 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 CLDN16Q9Y5I7 305 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 LTN1O94822 1766 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 ANKRD36CQ5JPF3 1778 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 CLN5O75503 358 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 PSMB10P40306 273 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 BTG2P78543 158 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 ELAVL3Q14576 367 aaKnown RBP4.25□□□□□ -1.73
SCN1A-220ENST00000641603 MRPL2Q5T653 305 aaKnown RBP4.25□□□□□ -1.73
SCN1A-220ENST00000641603 OR2AE1Q8NHA4 323 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 RSG1Q9BU20 258 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 YARS2Q9Y2Z4 477 aaKnown RBP4.25□□□□□ -1.73
SCN1A-220ENST00000641603 LSM2Q9Y333 95 aaKnown RBP4.25□□□□□ -1.73
SCN1A-220ENST00000641603 LEFTY2O00292 366 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 EIF4E2O60573 245 aaKnown RBP4.25□□□□□ -1.73
SCN1A-220ENST00000641603 VAMP5O95183 116 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 SBK3P0C264 359 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms