RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 SBF2Q86WG5 1849 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 H7BY64 318 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 EIF3FO00303 357 aaPredicted RBP2.56□□□□□ -2
SCN1A-219ENST00000641575 GPR12P47775 334 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 DSCR9P59020 149 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 FXYD4P59646 89 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 ERVPABLB-1P60509 514 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 RPL32P62910 135 aaKnown RBP2.56□□□□□ -2
SCN1A-219ENST00000641575 NECTIN1Q15223 517 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 RPS19BP1Q86WX3 136 aaKnown RBP2.56□□□□□ -2
SCN1A-219ENST00000641575 FIBINQ8TAL6 211 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 TXLNGYQ9BZA5 131 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 GSX1Q9H4S2 264 aaPredicted RBP2.56□□□□□ -2
SCN1A-219ENST00000641575 KNDC1Q76NI1 1749 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 NWD2Q9ULI1 1742 aa2.56□□□□□ -2
SCN1A-219ENST00000641575 SLC38A8A6NNN8 435 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 ALG1L2C9J202 215 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 PHF1O43189 567 aaPredicted RBP2.55□□□□□ -2
SCN1A-219ENST00000641575 KCNAB3O43448 404 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 XRCC2O43543 280 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 TTRP02766 147 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 MAS1P04201 325 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 INHBBP09529 407 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 ENGP17813 658 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 AOC1P19801 751 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 KLRB1Q12918 225 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 EIF4EBP2Q13542 120 aaPredicted RBP2.55□□□□□ -2
SCN1A-219ENST00000641575 RNPS1Q15287 305 aaKnown RBP2.55□□□□□ -2
SCN1A-219ENST00000641575 TSSK4Q6SA08 328 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 NPNTQ6UXI9 565 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 LRRC28Q86X40 367 aaPredicted RBP2.55□□□□□ -2
SCN1A-219ENST00000641575 SLC35G3Q8N808 338 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 DCAF4L2Q8NA75 395 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 OR5AP2Q8NGF4 316 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 OR6S1Q8NH40 331 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 SLC25A43Q8WUT9 341 aaPredicted RBP2.55□□□□□ -2
SCN1A-219ENST00000641575 TTTY10Q9BZA0 68 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 TPSD1Q9BZJ3 242 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 OR51I1Q9H343 314 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 PIPOXQ9P0Z9 390 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 PPIHO43447 177 aaKnown RBP2.55□□□□□ -2
SCN1A-219ENST00000641575 CLEC2LP0C7M8 214 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 AADACP22760 399 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 CTSSP25774 331 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 CDKN2AP42771 156 aaKnown RBP2.55□□□□□ -2
SCN1A-219ENST00000641575 HAAOP46952 286 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 PPOXP50336 477 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 RPL30P62888 115 aaKnown RBP2.55□□□□□ -2
SCN1A-219ENST00000641575 COL19A1Q14993 1142 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 ZNF789Q5FWF6 425 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 SHEQ5VZ18 495 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 ZNF595Q8IYB9 648 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 FBXL6Q8N531 539 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 B3GNT7Q8NFL0 401 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 ESAMQ96AP7 390 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 OR2A14Q96R47 310 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 KCNA7Q96RP8 456 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 TP53RKQ96S44 253 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 DPH7Q9BTV6 452 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 C20orf24Q9BUV8 137 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 NTMT1Q9BV86 223 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 TMEM147Q9BVK8 224 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 TMUB1Q9BVT8 246 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 POFUT1Q9H488 388 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 C12orf10Q9HB07 376 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 AMDHD2Q9Y303 409 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 PLIN4Q96Q06 1357 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 FAM183AA6NL82 134 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 HEPACAM2A8MVW5 462 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 DDAH2O95865 285 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 SLC10A3P09131 477 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 OR10J4P0C629 311 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 ACSM4P0C7M7 580 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 CD44P16070 742 aaKnown RBP2.55□□□□□ -2
SCN1A-219ENST00000641575 EFNA1P20827 205 aaPredicted RBP2.55□□□□□ -2
SCN1A-219ENST00000641575 G6PCP35575 357 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 BSGP35613 385 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 GLRXP35754 106 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 OR3A4PP47883 348 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 FAM182BQ5T319 152 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 CDCA2Q69YH5 1023 aaPredicted RBP2.55□□□□□ -2
SCN1A-219ENST00000641575 HBMQ6B0K9 141 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 CSNK1A1LQ8N752 337 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 FRMD1Q8N878 549 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 ZNF441Q8N8Z8 693 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 NECAP1Q8NC96 275 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 OR52L2PQ8NGH6 319 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 TMEM239Q8WW34 195 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 ZNF552Q9H707 407 aaPredicted RBP2.55□□□□□ -2
SCN1A-219ENST00000641575 GABRQQ9UN88 632 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 XIRP1Q702N8 1843 aaKnown RBP2.55□□□□□ -2
SCN1A-219ENST00000641575 TCRBV5S4A2TA0A5A2 114 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 SYT7O43581 403 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 FBXO24O75426 580 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 NXPH2O95156 264 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 CH25HO95992 272 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 HPNP05981 417 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 CPMP14384 443 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 DDOSTP39656 456 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 AKR1C1Q04828 323 aa2.55□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms