RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 HUS1O60921 280 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 NIPSNAP2O75323 286 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 HSBP1O75506 76 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 OR2J3O76001 311 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 OR2F2O95006 317 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 ZDHHC11BP0C7U3 371 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 GKN3PP0CG01 181 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 UBCP0CG48 685 aaKnown RBP1.62□□□□□ -2.15
CD44-239ENST00000639002 IGHV3-43DP0DP04 118 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 HNRNPH3P31942 346 aaKnown RBP1.62□□□□□ -2.15
CD44-239ENST00000639002 PCK1P35558 622 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 SUB1P53999 127 aaKnown RBP eCLIP1.62□□□□□ -2.15
CD44-239ENST00000639002 PSMD4P55036 377 aaKnown RBP1.62□□□□□ -2.15
CD44-239ENST00000639002 KCNJ2P63252 427 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 MRPS15P82914 257 aaKnown RBP1.62□□□□□ -2.15
CD44-239ENST00000639002 XRCC4Q13426 336 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 AQP6Q13520 282 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 MAPRE2Q15555 327 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 VAMP3Q15836 100 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 SPECC1LQ69YQ0 1117 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 H3F3CQ6NXT2 135 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 TTC23LQ6PF05 361 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 ULK3Q6PHR2 472 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 NTM-AS1Q6ZSK4 140 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 TMEM179Q6ZVK1 233 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 ABHD13Q7L211 337 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 WDR86Q86TI4 376 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 TMEM135Q86UB9 458 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 OAFQ86UD1 273 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 ERO1BQ86YB8 467 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 RBM45Q8IUH3 476 aaKnown RBP1.62□□□□□ -2.15
CD44-239ENST00000639002 MREGQ8N565 214 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 PQLC3Q8N755 202 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 GATSQ8NAP1 163 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 VN1R2Q8NFZ6 395 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 OR4A4PQ8NGN8 299 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 NDNFQ8TB73 568 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 PIH1D2Q8WWB5 315 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 TMIGD2Q96BF3 282 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 MED8Q96G25 268 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 AURKBQ96GD4 344 aaPredicted RBP1.62□□□□□ -2.15
CD44-239ENST00000639002 PLEKHA8Q96JA3 519 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 C8orf76Q96K31 380 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 WFIKKN1Q96NZ8 548 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 OXGR1Q96P68 337 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 MS4A4EQ96PG1 132 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 OR8B4Q96RC9 309 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 NAPGQ99747 312 aaPredicted RBP1.62□□□□□ -2.15
CD44-239ENST00000639002 SH3GL3Q99963 347 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 LZTS2Q9BRK4 669 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 CHAC1Q9BUX1 264 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 OSBPL10Q9BXB5 764 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 NSRP1Q9H0G5 558 aaKnown RBP1.62□□□□□ -2.15
CD44-239ENST00000639002 FBXO44Q9H4M3 255 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 VCX3AQ9NNX9 186 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 CTPS2Q9NRF8 586 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 IL20Q9NYY1 176 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 PTTG3PQ9NZH4 202 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 CTSFQ9UBX1 484 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 CBY1Q9Y3M2 126 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 CSDC2Q9Y534 153 aaKnown RBP1.62□□□□□ -2.15
CD44-239ENST00000639002 SAR1BQ9Y6B6 198 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 SDK2Q58EX2 2172 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 MYO3BQ8WXR4 1341 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 AK9Q5TCS8 1911 aa1.62□□□□□ -2.15
CD44-239ENST00000639002 SBNO1A3KN83 1393 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 A0A0B4J2A0 478 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 GOLGA8QA0A0J9YX86 632 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 KBTBD11-OT1A0A1B0GTJ5 212 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 A0A1W2PRD5 423 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 TRPC5OSA6NMA1 111 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 E7EWF7 191 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 TEX46H3BTG2 121 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 M0R3G1 203 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 CCL21O00585 134 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 RBFOX2O43251 390 aaKnown RBP eCLIP1.61□□□□□ -2.15
CD44-239ENST00000639002 OR7A10O76100 309 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 CDK14O94921 469 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 VAMP5O95183 116 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 TMEM50AO95807 157 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 BGLAPP02818 100 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 GAPDHP04406 335 aaKnown RBP1.61□□□□□ -2.15
CD44-239ENST00000639002 FGF1P05230 155 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 CLTAP09496 248 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 SMIM10L1P0DMW3 83 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 TCN2P20062 427 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 OPRD1P41143 372 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 SLC1A1P43005 524 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 GPR4P46093 362 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 GPR6P46095 362 aaPredicted RBP1.61□□□□□ -2.15
CD44-239ENST00000639002 CX3CR1P49238 355 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 MRPL19P49406 292 aaKnown RBP1.61□□□□□ -2.15
CD44-239ENST00000639002 CYB561P49447 251 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 PSMC5P62195 406 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 ESRRGP62508 458 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 XIAPP98170 497 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 ACVR1Q04771 509 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 RAD51Q06609 339 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 CDH17Q12864 832 aa1.61□□□□□ -2.15
CD44-239ENST00000639002 ECH1Q13011 328 aa1.61□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms