RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 SELENOWP63302 87 aa16.14■□□□□ 0.17
CLN3-262ENST00000637699 TRAM2Q15035 370 aa16.14■□□□□ 0.17
CLN3-262ENST00000637699 TBPL2Q6SJ96 375 aa16.14■□□□□ 0.17
CLN3-262ENST00000637699 ZNF730Q6ZMV8 503 aa16.14■□□□□ 0.17
CLN3-262ENST00000637699 GLB1L2Q8IW92 636 aa16.14■□□□□ 0.17
CLN3-262ENST00000637699 APOBEC3DQ96AK3 386 aaPredicted RBP16.14■□□□□ 0.17
CLN3-262ENST00000637699 FAM71F1Q96KD3 344 aaPredicted RBP16.14■□□□□ 0.17
CLN3-262ENST00000637699 CCDC134Q9H6E4 229 aa16.14■□□□□ 0.17
CLN3-262ENST00000637699 TMEM100Q9NV29 134 aa16.14■□□□□ 0.17
CLN3-262ENST00000637699 LOC100653049A0A140TA62 436 aa16.13■□□□□ 0.17
CLN3-262ENST00000637699 IQCF6A8MYZ5 107 aa16.13■□□□□ 0.17
CLN3-262ENST00000637699 J3QW42 95 aa16.13■□□□□ 0.17
CLN3-262ENST00000637699 CDC42EP2O14613 210 aa16.13■□□□□ 0.17
CLN3-262ENST00000637699 IMPA2O14732 288 aa16.13■□□□□ 0.17
CLN3-262ENST00000637699 PHYHO14832 338 aa16.13■□□□□ 0.17
CLN3-262ENST00000637699 ENSAO43768 121 aaKnown RBP16.13■□□□□ 0.17
CLN3-262ENST00000637699 KHDRBS3O75525 346 aaKnown RBP16.13■□□□□ 0.17
CLN3-262ENST00000637699 KRT34O76011 436 aa16.13■□□□□ 0.17
CLN3-262ENST00000637699 FSTL3O95633 263 aa16.13■□□□□ 0.17
CLN3-262ENST00000637699 FPR3P25089 353 aa16.13■□□□□ 0.17
CLN3-262ENST00000637699 PRSS12P56730 875 aa16.13■□□□□ 0.17
CLN3-262ENST00000637699 LSM6P62312 80 aaKnown RBP16.13■□□□□ 0.17
CLN3-262ENST00000637699 ZBED5Q49AG3 693 aa16.13■□□□□ 0.17
CLN3-262ENST00000637699 ZNF841Q6ZN19 808 aa16.13■□□□□ 0.17
CLN3-262ENST00000637699 ZNF620Q6ZNG0 422 aa16.13■□□□□ 0.17
CLN3-262ENST00000637699 DCDC5Q6ZRR9 648 aa16.13■□□□□ 0.17
CLN3-262ENST00000637699 FAM122BQ7Z309 247 aa16.13■□□□□ 0.17
CLN3-262ENST00000637699 ZSCAN2Q7Z7L9 614 aaPredicted RBP16.13■□□□□ 0.17
CLN3-262ENST00000637699 OFCC1Q8IZS5 231 aa16.13■□□□□ 0.17
CLN3-262ENST00000637699 UBE2FQ969M7 185 aa16.13■□□□□ 0.17
CLN3-262ENST00000637699 RBM4BQ9BQ04 359 aaKnown RBP16.13■□□□□ 0.17
CLN3-262ENST00000637699 SYT4Q9H2B2 425 aa16.13■□□□□ 0.17
CLN3-262ENST00000637699 POLR1DQ9Y2S0 133 aa16.13■□□□□ 0.17
CLN3-262ENST00000637699 RNF114Q9Y508 228 aa16.13■□□□□ 0.17
CLN3-262ENST00000637699 A0A087WUU8 490 aa16.12■□□□□ 0.17
CLN3-262ENST00000637699 MRASO14807 208 aa16.12■□□□□ 0.17
CLN3-262ENST00000637699 FFAR1O14842 300 aa16.12■□□□□ 0.17
CLN3-262ENST00000637699 HOXA4Q00056 320 aaPredicted RBP16.12■□□□□ 0.17
CLN3-262ENST00000637699 KRR1Q13601 381 aaKnown RBP16.12■□□□□ 0.17
CLN3-262ENST00000637699 HSP90B2PQ58FF3 399 aa16.12■□□□□ 0.17
CLN3-262ENST00000637699 ASPHD2Q6ICH7 369 aa16.12■□□□□ 0.17
CLN3-262ENST00000637699 VTCN1Q7Z7D3 282 aa16.12■□□□□ 0.17
CLN3-262ENST00000637699 RNF113BQ8IZP6 322 aaKnown RBP16.12■□□□□ 0.17
CLN3-262ENST00000637699 TMEM86BQ8N661 226 aa16.12■□□□□ 0.17
CLN3-262ENST00000637699 ACOT11Q8WXI4 607 aaPredicted RBP16.12■□□□□ 0.17
CLN3-262ENST00000637699 TECTBQ96PL2 329 aa16.12■□□□□ 0.17
CLN3-262ENST00000637699 ARMCX1Q9P291 453 aa16.12■□□□□ 0.17
CLN3-262ENST00000637699 KIF17Q9P2E2 1029 aa16.12■□□□□ 0.17
CLN3-262ENST00000637699 TMCC3Q9ULS5 477 aa16.12■□□□□ 0.17
CLN3-262ENST00000637699 TNFRSF13BO14836 293 aaPredicted RBP16.11■□□□□ 0.17
CLN3-262ENST00000637699 TOX4O94842 621 aa16.11■□□□□ 0.17
CLN3-262ENST00000637699 IFNW1P05000 195 aa16.11■□□□□ 0.17
CLN3-262ENST00000637699 CFHR2P36980 270 aa16.11■□□□□ 0.17
CLN3-262ENST00000637699 MDH1P40925 334 aaKnown RBP16.11■□□□□ 0.17
CLN3-262ENST00000637699 CENPAP49450 140 aa16.11■□□□□ 0.17
CLN3-262ENST00000637699 MAB21L1Q13394 359 aa16.11■□□□□ 0.17
CLN3-262ENST00000637699 PDCD1Q15116 288 aa16.11■□□□□ 0.17
CLN3-262ENST00000637699 COQ5Q5HYK3 327 aa16.11■□□□□ 0.17
CLN3-262ENST00000637699 TMPRSS11FQ6ZWK6 438 aa16.11■□□□□ 0.17
CLN3-262ENST00000637699 MBOAT2Q6ZWT7 520 aa16.11■□□□□ 0.17
CLN3-262ENST00000637699 C1QL4Q86Z23 238 aa16.11■□□□□ 0.17
CLN3-262ENST00000637699 FAM156AQ8NDB6 213 aa16.11■□□□□ 0.17
CLN3-262ENST00000637699 OR2T12Q8NG77 320 aa16.11■□□□□ 0.17
CLN3-262ENST00000637699 OR11L1Q8NGX0 322 aa16.11■□□□□ 0.17
CLN3-262ENST00000637699 SSMEM1Q8WWF3 244 aa16.11■□□□□ 0.17
CLN3-262ENST00000637699 LZICQ8WZA0 190 aa16.11■□□□□ 0.17
CLN3-262ENST00000637699 HCAR1Q9BXC0 346 aa16.11■□□□□ 0.17
CLN3-262ENST00000637699 MMADHCQ9H3L0 296 aaPredicted RBP16.11■□□□□ 0.17
CLN3-262ENST00000637699 NMNAT1Q9HAN9 279 aaPredicted RBP16.11■□□□□ 0.17
CLN3-262ENST00000637699 MED4Q9NPJ6 270 aa16.11■□□□□ 0.17
CLN3-262ENST00000637699 UFSP2Q9NUQ7 469 aa16.11■□□□□ 0.17
CLN3-262ENST00000637699 MRGBPQ9NV56 204 aa16.11■□□□□ 0.17
CLN3-262ENST00000637699 ATPIF1Q9UII2 106 aa16.11■□□□□ 0.17
CLN3-262ENST00000637699 POMT1Q9Y6A1 747 aa16.11■□□□□ 0.17
CLN3-262ENST00000637699 CENPVL3A0A0U1RRI6 287 aa16.1■□□□□ 0.17
CLN3-262ENST00000637699 FAM220BPB1ANY3 271 aa16.1■□□□□ 0.17
CLN3-262ENST00000637699 ZNF879B4DU55 563 aa16.1■□□□□ 0.17
CLN3-262ENST00000637699 P2RY10O00398 339 aa16.1■□□□□ 0.17
CLN3-262ENST00000637699 SOCS2O14508 198 aa16.1■□□□□ 0.17
CLN3-262ENST00000637699 FAM20BO75063 409 aa16.1■□□□□ 0.17
CLN3-262ENST00000637699 NPPAP01160 153 aa16.1■□□□□ 0.17
CLN3-262ENST00000637699 PSMB10P40306 273 aa16.1■□□□□ 0.17
CLN3-262ENST00000637699 GATA4P43694 442 aa16.1■□□□□ 0.17
CLN3-262ENST00000637699 MEP1BQ16820 701 aa16.1■□□□□ 0.17
CLN3-262ENST00000637699 PRAMEF6Q5VXH4 476 aa16.1■□□□□ 0.17
CLN3-262ENST00000637699 CORO6Q6QEF8 472 aa16.1■□□□□ 0.17
CLN3-262ENST00000637699 RRM2BQ7LG56 351 aa16.1■□□□□ 0.17
CLN3-262ENST00000637699 GJC3Q8NFK1 279 aa16.1■□□□□ 0.17
CLN3-262ENST00000637699 LINC01006Q8NI28 216 aa16.1■□□□□ 0.17
CLN3-262ENST00000637699 TBC1D15Q8TC07 691 aa16.1■□□□□ 0.17
CLN3-262ENST00000637699 GATAD2BQ8WXI9 593 aa16.1■□□□□ 0.17
CLN3-262ENST00000637699 TBX15Q96SF7 602 aa16.1■□□□□ 0.17
CLN3-262ENST00000637699 COQ7Q99807 217 aa16.1■□□□□ 0.17
CLN3-262ENST00000637699 NDEL1Q9GZM8 345 aa16.1■□□□□ 0.17
CLN3-262ENST00000637699 NUAK2Q9H093 628 aa16.1■□□□□ 0.17
CLN3-262ENST00000637699 ACOXLQ9NUZ1 547 aa16.1■□□□□ 0.17
CLN3-262ENST00000637699 RPS6KA6Q9UK32 745 aa16.1■□□□□ 0.17
CLN3-262ENST00000637699 ELOVL7A1L3X0 281 aa16.09■□□□□ 0.17
CLN3-262ENST00000637699 BBIP1A8MTZ0 92 aa16.09■□□□□ 0.17
CLN3-262ENST00000637699 GPR137BO60478 399 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms