RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 EFNA4P52798 201 aa15.56■□□□□ 0.08
CLN3-243ENST00000635973 SELENOVP59797 346 aa15.56■□□□□ 0.08
CLN3-243ENST00000635973 ERVS71-1P61550 626 aa15.56■□□□□ 0.08
CLN3-243ENST00000635973 PCK2Q16822 640 aa15.56■□□□□ 0.08
CLN3-243ENST00000635973 SPATA46Q5T0L3 261 aa15.56■□□□□ 0.08
CLN3-243ENST00000635973 RFPL4BQ6ZWI9 263 aa15.56■□□□□ 0.08
CLN3-243ENST00000635973 MEPCEQ7L2J0 689 aaKnown RBP15.56■□□□□ 0.08
CLN3-243ENST00000635973 TIGD4Q8IY51 512 aa15.56■□□□□ 0.08
CLN3-243ENST00000635973 ZNF101Q8IZC7 436 aa15.56■□□□□ 0.08
CLN3-243ENST00000635973 ZNF525Q8N782 197 aa15.56■□□□□ 0.08
CLN3-243ENST00000635973 PACRGLQ8N7B6 248 aa15.56■□□□□ 0.08
CLN3-243ENST00000635973 SPTSSAQ969W0 71 aa15.56■□□□□ 0.08
CLN3-243ENST00000635973 MRPL24Q96A35 216 aaKnown RBP15.56■□□□□ 0.08
CLN3-243ENST00000635973 SLAMF6Q96DU3 332 aa15.56■□□□□ 0.08
CLN3-243ENST00000635973 DCLRE1CQ96SD1 692 aaKnown RBP15.56■□□□□ 0.08
CLN3-243ENST00000635973 CNN2Q99439 309 aaKnown RBP15.56■□□□□ 0.08
CLN3-243ENST00000635973 SYT3Q9BQG1 590 aa15.56■□□□□ 0.08
CLN3-243ENST00000635973 MARCH7Q9H992 704 aa15.56■□□□□ 0.08
CLN3-243ENST00000635973 CENPMQ9NSP4 180 aa15.56■□□□□ 0.08
CLN3-243ENST00000635973 DNAJC27Q9NZQ0 273 aa15.56■□□□□ 0.08
CLN3-243ENST00000635973 RTTNQ86VV8 2226 aa15.56■□□□□ 0.08
CLN3-243ENST00000635973 A0A1W2PPW3 197 aa15.55■□□□□ 0.08
CLN3-243ENST00000635973 A8MV72 311 aaPredicted RBP15.55■□□□□ 0.08
CLN3-243ENST00000635973 IFNA2P01563 188 aa15.55■□□□□ 0.08
CLN3-243ENST00000635973 GCH1P30793 250 aa15.55■□□□□ 0.08
CLN3-243ENST00000635973 SLC34A1Q06495 639 aa15.55■□□□□ 0.08
CLN3-243ENST00000635973 EFNB3Q15768 340 aa15.55■□□□□ 0.08
CLN3-243ENST00000635973 AADACL4Q5VUY2 407 aa15.55■□□□□ 0.08
CLN3-243ENST00000635973 TRUB1Q8WWH5 349 aaKnown RBP15.55■□□□□ 0.08
CLN3-243ENST00000635973 TEAD3Q99594 435 aa15.55■□□□□ 0.08
CLN3-243ENST00000635973 MRPL37Q9BZE1 423 aaKnown RBP15.55■□□□□ 0.08
CLN3-243ENST00000635973 RNPEPL1Q9HAU8 725 aa15.55■□□□□ 0.08
CLN3-243ENST00000635973 DYNLRB1Q9NP97 96 aa15.55■□□□□ 0.08
CLN3-243ENST00000635973 PNRC2Q9NPJ4 139 aaKnown RBP15.55■□□□□ 0.08
CLN3-243ENST00000635973 DUSP13Q9UII6 198 aa15.55■□□□□ 0.08
CLN3-243ENST00000635973 LOC100130705A0A1B0GUX0 176 aa15.54■□□□□ 0.08
CLN3-243ENST00000635973 ZNF878C9JN71 531 aa15.54■□□□□ 0.08
CLN3-243ENST00000635973 CASQ2O14958 399 aaPredicted RBP15.54■□□□□ 0.08
CLN3-243ENST00000635973 LYNP07948 512 aa15.54■□□□□ 0.08
CLN3-243ENST00000635973 SLC15A1P46059 708 aa15.54■□□□□ 0.08
CLN3-243ENST00000635973 SLC6A9P48067 706 aa15.54■□□□□ 0.08
CLN3-243ENST00000635973 RGS6P49758 472 aa15.54■□□□□ 0.08
CLN3-243ENST00000635973 TPTEP56180 551 aa15.54■□□□□ 0.08
CLN3-243ENST00000635973 KLF3P57682 345 aaPredicted RBP15.54■□□□□ 0.08
CLN3-243ENST00000635973 PPP1CBP62140 327 aa15.54■□□□□ 0.08
CLN3-243ENST00000635973 EFNB1P98172 346 aa15.54■□□□□ 0.08
CLN3-243ENST00000635973 OGFRL1Q5TC84 451 aaPredicted RBP15.54■□□□□ 0.08
CLN3-243ENST00000635973 SLC16A9Q7RTY1 509 aa15.54■□□□□ 0.08
CLN3-243ENST00000635973 C1orf174Q8IYL3 243 aa15.54■□□□□ 0.08
CLN3-243ENST00000635973 ZNF454Q8N9F8 522 aa15.54■□□□□ 0.08
CLN3-243ENST00000635973 OR10S1Q8NGN2 331 aa15.54■□□□□ 0.08
CLN3-243ENST00000635973 SYNPRQ8TBG9 265 aa15.54■□□□□ 0.08
CLN3-243ENST00000635973 SLC25A40Q8TBP6 338 aa15.54■□□□□ 0.08
CLN3-243ENST00000635973 THEM6Q8WUY1 208 aa15.54■□□□□ 0.08
CLN3-243ENST00000635973 CYGBQ8WWM9 190 aa15.54■□□□□ 0.08
CLN3-243ENST00000635973 IPCEF1Q8WWN9 437 aaPredicted RBP15.54■□□□□ 0.08
CLN3-243ENST00000635973 RFKQ969G6 155 aa15.54■□□□□ 0.08
CLN3-243ENST00000635973 VRK1Q99986 396 aaPredicted RBP15.54■□□□□ 0.08
CLN3-243ENST00000635973 DDX28Q9NUL7 540 aaKnown RBP15.54■□□□□ 0.08
CLN3-243ENST00000635973 TBCCD1Q9NVR7 557 aa15.54■□□□□ 0.08
CLN3-243ENST00000635973 FAM118AQ9NWS6 357 aa15.54■□□□□ 0.08
CLN3-243ENST00000635973 NKX1-2Q9UD57 310 aaPredicted RBP15.54■□□□□ 0.08
CLN3-243ENST00000635973 LAMP5Q9UJQ1 280 aa15.54■□□□□ 0.08
CLN3-243ENST00000635973 FBXO9Q9UK97 447 aaPredicted RBP15.54■□□□□ 0.08
CLN3-243ENST00000635973 M0R135 149 aa15.53■□□□□ 0.08
CLN3-243ENST00000635973 F12P00748 615 aaPredicted RBP15.53■□□□□ 0.08
CLN3-243ENST00000635973 NGFP01138 241 aa15.53■□□□□ 0.08
CLN3-243ENST00000635973 HSD11B1P28845 292 aa15.53■□□□□ 0.08
CLN3-243ENST00000635973 LOXL1Q08397 574 aaPredicted RBP15.53■□□□□ 0.08
CLN3-243ENST00000635973 GGTLC2Q14390 218 aa15.53■□□□□ 0.08
CLN3-243ENST00000635973 NKPD1Q17RQ9 610 aa15.53■□□□□ 0.08
CLN3-243ENST00000635973 MSMPQ1L6U9 139 aa15.53■□□□□ 0.08
CLN3-243ENST00000635973 SWI5Q1ZZU3 235 aa15.53■□□□□ 0.08
CLN3-243ENST00000635973 TMEM249Q2WGJ8 235 aa15.53■□□□□ 0.08
CLN3-243ENST00000635973 ZNF718Q3SXZ3 478 aa15.53■□□□□ 0.08
CLN3-243ENST00000635973 CHRFAM7AQ494W8 412 aa15.53■□□□□ 0.08
CLN3-243ENST00000635973 OTOSQ8NHW6 89 aa15.53■□□□□ 0.08
CLN3-243ENST00000635973 ST7LQ8TDW4 575 aa15.53■□□□□ 0.08
CLN3-243ENST00000635973 APOBEC3DQ96AK3 386 aaPredicted RBP15.53■□□□□ 0.08
CLN3-243ENST00000635973 ZNF799Q96GE5 643 aa15.53■□□□□ 0.08
CLN3-243ENST00000635973 COG8Q96MW5 612 aa15.53■□□□□ 0.08
CLN3-243ENST00000635973 ZNF582Q96NG8 517 aaPredicted RBP15.53■□□□□ 0.08
CLN3-243ENST00000635973 ABHD6Q9BV23 337 aa15.53■□□□□ 0.08
CLN3-243ENST00000635973 OR2J1Q9GZK6 312 aa15.53■□□□□ 0.08
CLN3-243ENST00000635973 YIPF3Q9GZM5 350 aa15.53■□□□□ 0.08
CLN3-243ENST00000635973 WARS2Q9UGM6 360 aaKnown RBP15.53■□□□□ 0.08
CLN3-243ENST00000635973 M0R233 179 aa15.52■□□□□ 0.08
CLN3-243ENST00000635973 ICMTO60725 284 aa15.52■□□□□ 0.08
CLN3-243ENST00000635973 ACSM4P0C7M7 580 aa15.52■□□□□ 0.08
CLN3-243ENST00000635973 HTR1FP30939 366 aa15.52■□□□□ 0.08
CLN3-243ENST00000635973 ATP6V1E1P36543 226 aa15.52■□□□□ 0.08
CLN3-243ENST00000635973 PDLIM4P50479 330 aa15.52■□□□□ 0.08
CLN3-243ENST00000635973 GRB2P62993 217 aaKnown RBP15.52■□□□□ 0.08
CLN3-243ENST00000635973 CARTPTQ16568 116 aa15.52■□□□□ 0.08
CLN3-243ENST00000635973 MST1LQ2TV78 715 aa15.52■□□□□ 0.08
CLN3-243ENST00000635973 LRP11Q86VZ4 500 aa15.52■□□□□ 0.08
CLN3-243ENST00000635973 OR51G2Q8NGK0 314 aa15.52■□□□□ 0.08
CLN3-243ENST00000635973 OR5L1Q8NGL2 311 aa15.52■□□□□ 0.08
CLN3-243ENST00000635973 C10orf105Q8TEF2 133 aa15.52■□□□□ 0.08
CLN3-243ENST00000635973 SNX33Q8WV41 574 aa15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms