RNA–Protein interactions for RNA: ENST00000634934.2

LINC00339-208, long intergenic non-protein coding RNA 339, humanhuman

TSL 5 BASIC

Gene LINC00339, Length 1,518 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-208ENST00000634934 NBPF19A0A087WUL8 3843 aa12.64□□□□□ -0.39
LINC00339-208ENST00000634934 HECTD1Q9ULT8 2610 aa12.63□□□□□ -0.39
LINC00339-208ENST00000634934 A1L4Q6 167 aa12.63□□□□□ -0.39
LINC00339-208ENST00000634934 HMX3A6NHT5 357 aa12.63□□□□□ -0.39
LINC00339-208ENST00000634934 C16orf97H3BN30 126 aa12.63□□□□□ -0.39
LINC00339-208ENST00000634934 ZNF593O00488 134 aaPredicted RBP12.63□□□□□ -0.39
LINC00339-208ENST00000634934 HRGP04196 525 aa12.63□□□□□ -0.39
LINC00339-208ENST00000634934 SPARCP09486 303 aa12.63□□□□□ -0.39
LINC00339-208ENST00000634934 IL7P13232 177 aa12.63□□□□□ -0.39
LINC00339-208ENST00000634934 PSMB1P20618 241 aaKnown RBP12.63□□□□□ -0.39
LINC00339-208ENST00000634934 HOXC12P31275 282 aa12.63□□□□□ -0.39
LINC00339-208ENST00000634934 RPS27P42677 84 aaKnown RBP12.63□□□□□ -0.39
LINC00339-208ENST00000634934 UBE2NP61088 152 aaKnown RBP12.63□□□□□ -0.39
LINC00339-208ENST00000634934 PPP3R1P63098 170 aa12.63□□□□□ -0.39
LINC00339-208ENST00000634934 KCNMB1Q16558 191 aa12.63□□□□□ -0.39
LINC00339-208ENST00000634934 TBRG1Q3YBR2 411 aa12.63□□□□□ -0.39
LINC00339-208ENST00000634934 FAM27BQ5VT28 67 aa12.63□□□□□ -0.39
LINC00339-208ENST00000634934 TMEM53Q6P2H8 277 aa12.63□□□□□ -0.39
LINC00339-208ENST00000634934 ZNF627Q7L945 461 aa12.63□□□□□ -0.39
LINC00339-208ENST00000634934 SHFQ7M4L6 423 aa12.63□□□□□ -0.39
LINC00339-208ENST00000634934 SLC16A14Q7RTX9 510 aa12.63□□□□□ -0.39
LINC00339-208ENST00000634934 SKA3Q8IX90 412 aa12.63□□□□□ -0.39
LINC00339-208ENST00000634934 C1orf162Q8NEQ5 155 aaPredicted RBP12.63□□□□□ -0.39
LINC00339-208ENST00000634934 OR6N2Q8NGY6 317 aa12.63□□□□□ -0.39
LINC00339-208ENST00000634934 SMAP2Q8WU79 429 aaPredicted RBP12.63□□□□□ -0.39
LINC00339-208ENST00000634934 UFD1Q92890 307 aa12.63□□□□□ -0.39
LINC00339-208ENST00000634934 RNASE6Q93091 150 aaKnown RBP12.63□□□□□ -0.39
LINC00339-208ENST00000634934 ZNF486Q96H40 463 aaPredicted RBP12.63□□□□□ -0.39
LINC00339-208ENST00000634934 ZNF416Q9BWM5 594 aa12.63□□□□□ -0.39
LINC00339-208ENST00000634934 SLC22A4Q9H015 551 aa12.63□□□□□ -0.39
LINC00339-208ENST00000634934 KCNN2Q9H2S1 579 aa12.63□□□□□ -0.39
LINC00339-208ENST00000634934 PLEKHB1Q9UF11 243 aaPredicted RBP12.63□□□□□ -0.39
LINC00339-208ENST00000634934 SPTAN1Q13813 2472 aaKnown RBP12.63□□□□□ -0.39
LINC00339-208ENST00000634934 PTPN13Q12923 2485 aa12.63□□□□□ -0.39
LINC00339-208ENST00000634934 A0A1W2PR80 420 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 PATE4P0C8F1 98 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 RFX2P48378 723 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 LSM6P62312 80 aaKnown RBP12.62□□□□□ -0.39
LINC00339-208ENST00000634934 POU4F2Q12837 409 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 ENDOGQ14249 297 aaKnown RBP12.62□□□□□ -0.39
LINC00339-208ENST00000634934 GGTLC2Q14390 218 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 FBXL19-AS1Q494R0 122 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 NRN1LQ496H8 165 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 LINC00346Q8IVM7 164 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 TIGD4Q8IY51 512 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 STEAP2Q8NFT2 490 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 OR4F15Q8NGB8 312 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 S100PBPQ96BU1 408 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 ACTR6Q9GZN1 396 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 MARCH7Q9H992 704 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 ADGRL4Q9HBW9 690 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 HAO2Q9NYQ3 351 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 ASH2LQ9UBL3 628 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 ZNF221Q9UK13 617 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 C12orf71A8MTZ7 269 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 TMCC2O75069 709 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 CCNKO75909 580 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 HLA-HP01893 362 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 KRT8P05787 483 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 CST2P09228 141 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 SBK2P0C263 348 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 LIMS3P0CW19 117 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 LIMS4P0CW20 117 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 CD79AP11912 226 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 HLA-DMAP28067 261 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 ETV1P50549 477 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 ALKBH2Q6NS38 261 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 CORO6Q6QEF8 472 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 SLC16A9Q7RTY1 509 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 DPY19L4Q7Z388 723 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 OR2AJ1Q8NGZ0 328 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 OR52N5Q8NH56 324 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 NANOS1Q8WY41 292 aaKnown RBP12.62□□□□□ -0.39
LINC00339-208ENST00000634934 ACOT12Q8WYK0 555 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 TRMT61AQ96FX7 289 aaKnown RBP12.62□□□□□ -0.39
LINC00339-208ENST00000634934 MIXL1Q9H2W2 232 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 RNF121Q9H920 327 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 EXOSC4Q9NPD3 245 aaKnown RBP12.62□□□□□ -0.39
LINC00339-208ENST00000634934 SLC17A5Q9NRA2 495 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 INPP5EQ9NRR6 644 aa12.62□□□□□ -0.39
LINC00339-208ENST00000634934 OR5H1A6NKK0 313 aa12.61□□□□□ -0.39
LINC00339-208ENST00000634934 CLDN1O95832 211 aa12.61□□□□□ -0.39
LINC00339-208ENST00000634934 HLA-DPB1P04440 258 aa12.61□□□□□ -0.39
LINC00339-208ENST00000634934 GSTT2P0CG29 244 aa12.61□□□□□ -0.39
LINC00339-208ENST00000634934 GSTT2BP0CG30 244 aa12.61□□□□□ -0.39
LINC00339-208ENST00000634934 GRNP28799 593 aaKnown RBP12.61□□□□□ -0.39
LINC00339-208ENST00000634934 CCKARP32238 428 aa12.61□□□□□ -0.39
LINC00339-208ENST00000634934 SDC2P34741 201 aa12.61□□□□□ -0.39
LINC00339-208ENST00000634934 HCCSP53701 268 aa12.61□□□□□ -0.39
LINC00339-208ENST00000634934 PCBD1P61457 104 aa12.61□□□□□ -0.39
LINC00339-208ENST00000634934 SLC36A2Q495M3 483 aa12.61□□□□□ -0.39
LINC00339-208ENST00000634934 LIPKQ5VXJ0 399 aa12.61□□□□□ -0.39
LINC00339-208ENST00000634934 NRARPQ7Z6K4 114 aa12.61□□□□□ -0.39
LINC00339-208ENST00000634934 SLC35F2Q8IXU6 374 aa12.61□□□□□ -0.39
LINC00339-208ENST00000634934 C17orf78Q8N4C9 275 aa12.61□□□□□ -0.39
LINC00339-208ENST00000634934 OR10H4Q8NGA5 316 aa12.61□□□□□ -0.39
LINC00339-208ENST00000634934 FGFBP3Q8TAT2 258 aa12.61□□□□□ -0.39
LINC00339-208ENST00000634934 FBXO17Q96EF6 278 aa12.61□□□□□ -0.39
LINC00339-208ENST00000634934 PSMG3-AS1Q96PY0 264 aa12.61□□□□□ -0.39
LINC00339-208ENST00000634934 TBX5Q99593 518 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms