RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 UBE2MP61081 183 aaKnown RBP9.42□□□□□ -0.9
CUX1-221ENST00000622516 TAF13Q15543 124 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 HSPB2Q16082 182 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 GLT8D1Q68CQ7 371 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 KLHL24Q6TFL4 600 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.42□□□□□ -0.9
CUX1-221ENST00000622516 RTN4RL2Q86UN3 420 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 OR13C9Q8NGT0 318 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 ZNF837Q96EG3 531 aaPredicted RBP9.42□□□□□ -0.9
CUX1-221ENST00000622516 DIABLOQ9NR28 239 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 DKKL1Q9UK85 242 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 PADI1Q9ULC6 663 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 LOXL2Q9Y4K0 774 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 DSPP15924 2871 aaKnown RBP9.42□□□□□ -0.9
CUX1-221ENST00000622516 PCNX2A6NKB5 2137 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 LNP1A1A4G5 178 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 RFPL3SP0C7P2 107 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 IGFBP3P17936 291 aaPredicted RBP9.42□□□□□ -0.9
CUX1-221ENST00000622516 STARP49675 285 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 SELENOPP49908 381 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 DLX5P56178 289 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 EXT1Q16394 746 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 DCAF12Q5T6F0 453 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 PLXDC2Q6UX71 529 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 UXS1Q8NBZ7 420 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 ACBD4Q8NC06 268 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 OR2AJ1Q8NGZ0 328 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 OXGR1Q96P68 337 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 CNTD2Q9H8S5 307 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 PLEKHA1Q9HB21 404 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 SCPEP1Q9HB40 452 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 COPZ2Q9P299 210 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 NCKAP5O14513 1909 aa9.42□□□□□ -0.9
CUX1-221ENST00000622516 E9PLN8 166 aa9.41□□□□□ -0.9
CUX1-221ENST00000622516 ECDO95905 644 aaPredicted RBP9.41□□□□□ -0.9
CUX1-221ENST00000622516 CD3DP04234 171 aa9.41□□□□□ -0.9
CUX1-221ENST00000622516 GTF2F2P13984 249 aa9.41□□□□□ -0.9
CUX1-221ENST00000622516 LIFP15018 202 aa9.41□□□□□ -0.9
CUX1-221ENST00000622516 RFC3P40938 356 aa9.41□□□□□ -0.9
CUX1-221ENST00000622516 EIF1P41567 113 aaKnown RBP9.41□□□□□ -0.9
CUX1-221ENST00000622516 TSPAN7P41732 249 aa9.41□□□□□ -0.9
CUX1-221ENST00000622516 ZP1P60852 638 aa9.41□□□□□ -0.9
CUX1-221ENST00000622516 TIGD3Q6B0B8 471 aa9.41□□□□□ -0.9
CUX1-221ENST00000622516 FAM166AQ6J272 317 aa9.41□□□□□ -0.9
CUX1-221ENST00000622516 ABHD12BQ7Z5M8 362 aaPredicted RBP9.41□□□□□ -0.9
CUX1-221ENST00000622516 OR4C16Q8NGL9 310 aa9.41□□□□□ -0.9
CUX1-221ENST00000622516 OR1J2Q8NGS2 313 aa9.41□□□□□ -0.9
CUX1-221ENST00000622516 OR6N1Q8NGY5 312 aa9.41□□□□□ -0.9
CUX1-221ENST00000622516 ZFAND1Q8TCF1 268 aa9.41□□□□□ -0.9
CUX1-221ENST00000622516 FAM71F1Q96KD3 344 aaPredicted RBP9.41□□□□□ -0.9
CUX1-221ENST00000622516 AKAP7Q9P0M2 348 aaPredicted RBP9.41□□□□□ -0.9
CUX1-221ENST00000622516 TCFL5Q9UL49 500 aa9.41□□□□□ -0.9
CUX1-221ENST00000622516 MGAT4AQ9UM21 535 aa9.41□□□□□ -0.9
CUX1-221ENST00000622516 FREM1Q5H8C1 2179 aa9.41□□□□□ -0.9
CUX1-221ENST00000622516 AQP7P3A6NL99 342 aa9.41□□□□□ -0.9
CUX1-221ENST00000622516 PYCARD-AS1I3L0S3 204 aa9.41□□□□□ -0.9
CUX1-221ENST00000622516 SULT1B1O43704 296 aa9.41□□□□□ -0.9
CUX1-221ENST00000622516 ALX3O95076 343 aa9.41□□□□□ -0.9
CUX1-221ENST00000622516 HRGP04196 525 aa9.41□□□□□ -0.9
CUX1-221ENST00000622516 RLN1P04808 185 aa9.41□□□□□ -0.9
CUX1-221ENST00000622516 CSN2P05814 226 aa9.41□□□□□ -0.9
CUX1-221ENST00000622516 MMP16P51512 607 aa9.41□□□□□ -0.9
CUX1-221ENST00000622516 PRSS12P56730 875 aa9.41□□□□□ -0.9
CUX1-221ENST00000622516 GNG2P59768 71 aa9.41□□□□□ -0.9
CUX1-221ENST00000622516 AP3S2P59780 193 aa9.41□□□□□ -0.9
CUX1-221ENST00000622516 GABREP78334 506 aa9.41□□□□□ -0.9
CUX1-221ENST00000622516 OC90Q02509 493 aaPredicted RBP9.41□□□□□ -0.9
CUX1-221ENST00000622516 TRA2AQ13595 282 aaKnown RBP eCLIP9.41□□□□□ -0.9
CUX1-221ENST00000622516 ZNF782Q6ZMW2 699 aaPredicted RBP9.41□□□□□ -0.9
CUX1-221ENST00000622516 ZNF704Q6ZNC4 412 aaPredicted RBP9.41□□□□□ -0.9
CUX1-221ENST00000622516 PPP1R32Q7Z5V6 425 aa9.41□□□□□ -0.9
CUX1-221ENST00000622516 OR51S1Q8NGJ8 323 aa9.41□□□□□ -0.9
CUX1-221ENST00000622516 OR2M2Q96R28 347 aa9.41□□□□□ -0.9
CUX1-221ENST00000622516 MRI1Q9BV20 369 aa9.41□□□□□ -0.9
CUX1-221ENST00000622516 ZNF416Q9BWM5 594 aa9.41□□□□□ -0.9
CUX1-221ENST00000622516 RBM24Q9BX46 236 aaKnown RBP9.41□□□□□ -0.9
CUX1-221ENST00000622516 METTL17Q9H7H0 456 aaPredicted RBP9.41□□□□□ -0.9
CUX1-221ENST00000622516 ZFP64Q9NPA5 681 aa9.41□□□□□ -0.9
CUX1-221ENST00000622516 ZNF275Q9NSD4 429 aaPredicted RBP9.41□□□□□ -0.9
CUX1-221ENST00000622516 ZNF69Q9UC07 566 aa9.41□□□□□ -0.9
CUX1-221ENST00000622516 SLC5A6Q9Y289 635 aa9.41□□□□□ -0.9
CUX1-221ENST00000622516 A0A0J9YW62 118 aa9.4□□□□□ -0.9
CUX1-221ENST00000622516 H7C417 338 aa9.4□□□□□ -0.9
CUX1-221ENST00000622516 TRAPPC6AO75865 159 aa9.4□□□□□ -0.9
CUX1-221ENST00000622516 SSTR2P30874 369 aa9.4□□□□□ -0.9
CUX1-221ENST00000622516 PRSS3P35030 304 aa9.4□□□□□ -0.9
CUX1-221ENST00000622516 ZNF121P58317 390 aaPredicted RBP9.4□□□□□ -0.9
CUX1-221ENST00000622516 MLF1P58340 268 aa9.4□□□□□ -0.9
CUX1-221ENST00000622516 SLC35A1P78382 337 aa9.4□□□□□ -0.9
CUX1-221ENST00000622516 FAM57BQ71RH2 274 aa9.4□□□□□ -0.9
CUX1-221ENST00000622516 RAB11FIP2Q7L804 512 aa9.4□□□□□ -0.9
CUX1-221ENST00000622516 GTPBP8Q8N3Z3 284 aaPredicted RBP9.4□□□□□ -0.9
CUX1-221ENST00000622516 DTWD2Q8NBA8 298 aa9.4□□□□□ -0.9
CUX1-221ENST00000622516 OR6X1Q8NH79 312 aa9.4□□□□□ -0.9
CUX1-221ENST00000622516 PAQR8Q8TEZ7 354 aa9.4□□□□□ -0.9
CUX1-221ENST00000622516 ANGPTL4Q9BY76 406 aa9.4□□□□□ -0.9
CUX1-221ENST00000622516 STMN3Q9NZ72 180 aa9.4□□□□□ -0.9
CUX1-221ENST00000622516 MTFP1Q9UDX5 166 aa9.4□□□□□ -0.9
CUX1-221ENST00000622516 HDGFL3Q9Y3E1 203 aa9.4□□□□□ -0.9
CUX1-221ENST00000622516 ARID1AO14497 2285 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms