RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 PTTG3PQ9NZH4 202 aa11.53□□□□□ -0.56
LINC00540-202ENST00000616974 IGLV3-9A0A075B6K5 115 aa11.53□□□□□ -0.56
LINC00540-202ENST00000616974 IGHV3-64DA0A0J9YX35 117 aa11.53□□□□□ -0.56
LINC00540-202ENST00000616974 B9A039 149 aa11.53□□□□□ -0.56
LINC00540-202ENST00000616974 ZNF250P15622 560 aa11.53□□□□□ -0.56
LINC00540-202ENST00000616974 PAICSP22234 425 aaKnown RBP11.53□□□□□ -0.56
LINC00540-202ENST00000616974 PCSK6P29122 969 aa11.53□□□□□ -0.56
LINC00540-202ENST00000616974 LRRN1Q6UXK5 716 aa11.53□□□□□ -0.56
LINC00540-202ENST00000616974 OR5AS1Q8N127 324 aa11.53□□□□□ -0.56
LINC00540-202ENST00000616974 BHLHE23Q8NDY6 225 aa11.53□□□□□ -0.56
LINC00540-202ENST00000616974 HRASLS5Q96KN8 279 aa11.53□□□□□ -0.56
LINC00540-202ENST00000616974 TBX5Q99593 518 aa11.53□□□□□ -0.56
LINC00540-202ENST00000616974 C9orf16Q9BUW7 83 aa11.53□□□□□ -0.56
LINC00540-202ENST00000616974 AMBNQ9NP70 447 aa11.53□□□□□ -0.56
LINC00540-202ENST00000616974 BRD7Q9NPI1 651 aa11.53□□□□□ -0.56
LINC00540-202ENST00000616974 TAAR3PQ9P1P4 343 aa11.53□□□□□ -0.56
LINC00540-202ENST00000616974 NDRG4Q9ULP0 352 aaKnown RBP11.53□□□□□ -0.56
LINC00540-202ENST00000616974 TANC2Q9HCD6 1990 aa11.52□□□□□ -0.56
LINC00540-202ENST00000616974 DOCK11Q5JSL3 2073 aa11.52□□□□□ -0.57
LINC00540-202ENST00000616974 ZSCAN5BA6NJL1 495 aa11.52□□□□□ -0.57
LINC00540-202ENST00000616974 PRODHO43272 600 aa11.52□□□□□ -0.57
LINC00540-202ENST00000616974 ICMTO60725 284 aa11.52□□□□□ -0.57
LINC00540-202ENST00000616974 HPXP02790 462 aa11.52□□□□□ -0.57
LINC00540-202ENST00000616974 SELEP16581 610 aa11.52□□□□□ -0.57
LINC00540-202ENST00000616974 HOXA4Q00056 320 aaPredicted RBP11.52□□□□□ -0.57
LINC00540-202ENST00000616974 Q6ZR03 302 aa11.52□□□□□ -0.57
LINC00540-202ENST00000616974 OTOSQ8NHW6 89 aa11.52□□□□□ -0.57
LINC00540-202ENST00000616974 PPP1R14AQ96A00 147 aa11.52□□□□□ -0.57
LINC00540-202ENST00000616974 ZNF582Q96NG8 517 aaPredicted RBP11.52□□□□□ -0.57
LINC00540-202ENST00000616974 HDHD2Q9H0R4 259 aa11.52□□□□□ -0.57
LINC00540-202ENST00000616974 C1orf198Q9H425 327 aa11.52□□□□□ -0.57
LINC00540-202ENST00000616974 PPP1R3EQ9H7J1 279 aa11.52□□□□□ -0.57
LINC00540-202ENST00000616974 ADGRL4Q9HBW9 690 aa11.52□□□□□ -0.57
LINC00540-202ENST00000616974 DDX28Q9NUL7 540 aaKnown RBP11.52□□□□□ -0.57
LINC00540-202ENST00000616974 TREM2Q9NZC2 230 aa11.52□□□□□ -0.57
LINC00540-202ENST00000616974 CACNG2Q9Y698 323 aa11.52□□□□□ -0.57
LINC00540-202ENST00000616974 IGHV4-30-2A0A087WSY4 118 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 A0A1W2PPW3 197 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 H7C417 338 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 M0R135 149 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 ENTPD6O75354 484 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 PTHP01270 115 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 GNAO1P09471 354 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 COX5BP10606 129 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 PAX1P15863 534 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 PAX7P23759 505 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 OTX1P32242 354 aaPredicted RBP11.51□□□□□ -0.57
LINC00540-202ENST00000616974 RAD52P43351 418 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 SLC6A9P48067 706 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 MMP15P51511 669 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 NUDT6P53370 316 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 SNRPD2P62316 118 aaKnown RBP11.51□□□□□ -0.57
LINC00540-202ENST00000616974 SMN1Q16637 294 aaKnown RBP11.51□□□□□ -0.57
LINC00540-202ENST00000616974 ENTHD1Q8IYW4 607 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 OR51G2Q8NGK0 314 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 SYNPRQ8TBG9 265 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 THEM6Q8WUY1 208 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 ZNF799Q96GE5 643 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 COQ7Q99807 217 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 RHNO1Q9BSD3 238 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 COPS4Q9BT78 406 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 GABRB1P18505 474 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 KLF3P57682 345 aaPredicted RBP11.51□□□□□ -0.57
LINC00540-202ENST00000616974 CCL8P80075 99 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 TNK1Q13470 666 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 TEX30Q5JUR7 227 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 NXNL2Q5VZ03 156 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 OR2T2Q6IF00 324 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 SPNS3Q6ZMD2 512 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 DNM1P46Q6ZS02 220 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 COLCA1Q6ZS62 124 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 MEPCEQ7L2J0 689 aaKnown RBP11.51□□□□□ -0.57
LINC00540-202ENST00000616974 OR1J2Q8NGS2 313 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 RNF133Q8WVZ7 376 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 APH1BQ8WW43 257 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 DVL3Q92997 716 aaPredicted RBP11.51□□□□□ -0.57
LINC00540-202ENST00000616974 CMBLQ96DG6 245 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 BCL2L14Q9BZR8 327 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 FAM118AQ9NWS6 357 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 DCAF16Q9NXF7 216 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 SLCO1C1Q9NYB5 712 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 SPEF1Q9Y4P9 236 aa11.51□□□□□ -0.57
LINC00540-202ENST00000616974 ALOX5APP20292 161 aa11.5□□□□□ -0.57
LINC00540-202ENST00000616974 OPRL1P41146 370 aa11.5□□□□□ -0.57
LINC00540-202ENST00000616974 PRSS45Q7RTY3 260 aa11.5□□□□□ -0.57
LINC00540-202ENST00000616974 C1QTNF5Q9BXJ0 243 aa11.5□□□□□ -0.57
LINC00540-202ENST00000616974 DYNLRB1Q9NP97 96 aa11.5□□□□□ -0.57
LINC00540-202ENST00000616974 EIF3KQ9UBQ5 218 aaKnown RBP11.5□□□□□ -0.57
LINC00540-202ENST00000616974 H0YL77 283 aa11.5□□□□□ -0.57
LINC00540-202ENST00000616974 M0R233 179 aa11.5□□□□□ -0.57
LINC00540-202ENST00000616974 SMAD7O15105 426 aaKnown RBP11.5□□□□□ -0.57
LINC00540-202ENST00000616974 LCATP04180 440 aa11.5□□□□□ -0.57
LINC00540-202ENST00000616974 ZNF92Q03936 586 aa11.5□□□□□ -0.57
LINC00540-202ENST00000616974 GK2Q14410 553 aaPredicted RBP11.5□□□□□ -0.57
LINC00540-202ENST00000616974 NKPD1Q17RQ9 610 aa11.5□□□□□ -0.57
LINC00540-202ENST00000616974 CLEC12BQ2HXU8 276 aa11.5□□□□□ -0.57
LINC00540-202ENST00000616974 DMRTC1Q5HYR2 192 aa11.5□□□□□ -0.57
LINC00540-202ENST00000616974 OGFRL1Q5TC84 451 aaPredicted RBP11.5□□□□□ -0.57
LINC00540-202ENST00000616974 LURAP1LQ8IV03 231 aa11.5□□□□□ -0.57
LINC00540-202ENST00000616974 LRRC75A-AS1Q8N1F1 130 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms