RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 ACVR1BP36896 505 aa9.21□□□□□ -0.93
VPS39-214ENST00000614932 P2RY2P41231 377 aa9.21□□□□□ -0.93
VPS39-214ENST00000614932 CDC34P49427 236 aaPredicted RBP9.21□□□□□ -0.93
VPS39-214ENST00000614932 CLDN12P56749 244 aa9.21□□□□□ -0.93
VPS39-214ENST00000614932 TAS2R19P59542 299 aa9.21□□□□□ -0.93
VPS39-214ENST00000614932 TAS2R20P59543 309 aa9.21□□□□□ -0.93
VPS39-214ENST00000614932 PPP2CBP62714 309 aa9.21□□□□□ -0.93
VPS39-214ENST00000614932 PPP2CAP67775 309 aa9.21□□□□□ -0.93
VPS39-214ENST00000614932 DLK1P80370 383 aa9.21□□□□□ -0.93
VPS39-214ENST00000614932 GUK1Q16774 197 aa9.21□□□□□ -0.93
VPS39-214ENST00000614932 ZNF385BQ569K4 471 aa9.21□□□□□ -0.93
VPS39-214ENST00000614932 MTSS1LQ765P7 747 aa9.21□□□□□ -0.93
VPS39-214ENST00000614932 KMT5CQ86Y97 462 aa9.21□□□□□ -0.93
VPS39-214ENST00000614932 COMMD1Q8N668 190 aa9.21□□□□□ -0.93
VPS39-214ENST00000614932 AMER3Q8N944 861 aa9.21□□□□□ -0.93
VPS39-214ENST00000614932 OR51G2Q8NGK0 314 aa9.21□□□□□ -0.93
VPS39-214ENST00000614932 OR6T1Q8NGN1 323 aa9.21□□□□□ -0.93
VPS39-214ENST00000614932 OR13C5Q8NGS8 318 aa9.21□□□□□ -0.93
VPS39-214ENST00000614932 OR13C2Q8NGS9 318 aa9.21□□□□□ -0.93
VPS39-214ENST00000614932 SYNPRQ8TBG9 265 aa9.21□□□□□ -0.93
VPS39-214ENST00000614932 TIFAQ96CG3 184 aa9.21□□□□□ -0.93
VPS39-214ENST00000614932 FAM46AQ96IP4 442 aaKnown RBP9.21□□□□□ -0.93
VPS39-214ENST00000614932 TIMP4Q99727 224 aa9.21□□□□□ -0.93
VPS39-214ENST00000614932 KCNJ16Q9NPI9 418 aa9.21□□□□□ -0.93
VPS39-214ENST00000614932 MTFP1Q9UDX5 166 aa9.21□□□□□ -0.93
VPS39-214ENST00000614932 F5P12259 2224 aa9.21□□□□□ -0.94
VPS39-214ENST00000614932 FEZF1A0PJY2 475 aa9.21□□□□□ -0.94
VPS39-214ENST00000614932 TVP23AA6NH52 213 aa9.21□□□□□ -0.94
VPS39-214ENST00000614932 SLC16A5O15375 505 aa9.21□□□□□ -0.94
VPS39-214ENST00000614932 LINC01565O15544 149 aa9.21□□□□□ -0.94
VPS39-214ENST00000614932 TMEM127O75204 238 aa9.21□□□□□ -0.94
VPS39-214ENST00000614932 SCGNO76038 276 aa9.21□□□□□ -0.94
VPS39-214ENST00000614932 KLK1P06870 262 aa9.21□□□□□ -0.94
VPS39-214ENST00000614932 MELTFP08582 738 aa9.21□□□□□ -0.94
VPS39-214ENST00000614932 ARAFP10398 606 aa9.21□□□□□ -0.94
VPS39-214ENST00000614932 ID4P47928 161 aa9.21□□□□□ -0.94
VPS39-214ENST00000614932 RAB7AP51149 207 aa9.21□□□□□ -0.94
VPS39-214ENST00000614932 REEP5Q00765 189 aa9.21□□□□□ -0.94
VPS39-214ENST00000614932 GGTA1PQ4G0N0 100 aa9.21□□□□□ -0.94
VPS39-214ENST00000614932 ZNF343Q6P1L6 599 aa9.21□□□□□ -0.94
VPS39-214ENST00000614932 Q6ZRG5 221 aa9.21□□□□□ -0.94
VPS39-214ENST00000614932 ADCK2Q7Z695 626 aa9.21□□□□□ -0.94
VPS39-214ENST00000614932 GABRG1Q8N1C3 465 aa9.21□□□□□ -0.94
VPS39-214ENST00000614932 C17orf47Q8NEP4 570 aa9.21□□□□□ -0.94
VPS39-214ENST00000614932 CXorf40AQ8TE69 158 aa9.21□□□□□ -0.94
VPS39-214ENST00000614932 HAS2Q92819 552 aa9.21□□□□□ -0.94
VPS39-214ENST00000614932 SLC35A5Q9BS91 424 aa9.21□□□□□ -0.94
VPS39-214ENST00000614932 NDC1Q9BTX1 674 aa9.21□□□□□ -0.94
VPS39-214ENST00000614932 OR2J1Q9GZK6 312 aa9.21□□□□□ -0.94
VPS39-214ENST00000614932 OR2S2Q9NQN1 319 aa9.21□□□□□ -0.94
VPS39-214ENST00000614932 CSAG2Q9Y5P2 127 aa9.21□□□□□ -0.94
VPS39-214ENST00000614932 DAPL1A0PJW8 107 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 AHRRA9YTQ3 701 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 MASP2O00187 686 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 TSPAN15O95858 294 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 PSMB6P28072 239 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 CTHP32929 405 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 ACTBP60709 375 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 ACTA2P62736 377 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 ACTG1P63261 375 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 ACTG2P63267 376 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 ACTC1P68032 377 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 ACTA1P68133 377 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 DHRS2Q13268 280 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 ELAVL3Q14576 367 aaKnown RBP9.2□□□□□ -0.94
VPS39-214ENST00000614932 SLCO4C1Q6ZQN7 724 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 BIVMQ86UB2 503 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 MAML2Q8IZL2 1156 aaPredicted RBP9.2□□□□□ -0.94
VPS39-214ENST00000614932 BBS1Q8NFJ9 593 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 OR1L6Q8NGR2 347 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 LYPD6BQ8NI32 183 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 SFXN5Q8TD22 340 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 SMARCD2Q92925 531 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 CMBLQ96DG6 245 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 RCC1LQ96I51 464 aaKnown RBP9.2□□□□□ -0.94
VPS39-214ENST00000614932 PGLYRP3Q96LB9 341 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 TBX5Q99593 518 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 MACROD1Q9BQ69 325 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 EIF5A2Q9GZV4 153 aaKnown RBP9.2□□□□□ -0.94
VPS39-214ENST00000614932 MBNL1Q9NR56 388 aaKnown RBP9.2□□□□□ -0.94
VPS39-214ENST00000614932 PLSCR2Q9NRY7 297 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 HAO2Q9NYQ3 351 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 DKKL1Q9UK85 242 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 YBX2Q9Y2T7 364 aaKnown RBP9.2□□□□□ -0.94
VPS39-214ENST00000614932 PUS1Q9Y606 427 aaKnown RBP eCLIP9.2□□□□□ -0.94
VPS39-214ENST00000614932 TGIF2-C20orf24A0A0A6YYL0 155 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 TSPAN11A1L157 253 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 ZNF727A8MUV8 499 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 GTF2F2P13984 249 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 NT5EP21589 574 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 SNCAP37840 140 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 TAS2R38P59533 333 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 MRPL49Q13405 166 aaKnown RBP9.2□□□□□ -0.94
VPS39-214ENST00000614932 FBXO42Q6P3S6 717 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 NXPE4Q6UWF7 544 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 SLC25A43Q8WUT9 341 aaPredicted RBP9.2□□□□□ -0.94
VPS39-214ENST00000614932 GHSRQ92847 366 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 ZBTB8AQ96BR9 441 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 HAVCR1Q96D42 359 aa9.2□□□□□ -0.94
VPS39-214ENST00000614932 SNX22Q96L94 193 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms