RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 MBNL2Q5VZF2 373 aaKnown RBP14.19□□□□□ -0.14
CCDC28A-202ENST00000611852 COLCA1Q6ZS62 124 aa14.19□□□□□ -0.14
CCDC28A-202ENST00000611852 SPATC1Q76KD6 591 aa14.19□□□□□ -0.14
CCDC28A-202ENST00000611852 RHOUQ7L0Q8 258 aa14.19□□□□□ -0.14
CCDC28A-202ENST00000611852 KRTAP1-3Q8IUG1 177 aa14.19□□□□□ -0.14
CCDC28A-202ENST00000611852 KLF14Q8TD94 323 aaPredicted RBP14.19□□□□□ -0.14
CCDC28A-202ENST00000611852 SPTSSAQ969W0 71 aa14.19□□□□□ -0.14
CCDC28A-202ENST00000611852 APOBEC3DQ96AK3 386 aaPredicted RBP14.19□□□□□ -0.14
CCDC28A-202ENST00000611852 ZNF799Q96GE5 643 aa14.19□□□□□ -0.14
CCDC28A-202ENST00000611852 CNN2Q99439 309 aaKnown RBP14.19□□□□□ -0.14
CCDC28A-202ENST00000611852 YIPF3Q9GZM5 350 aa14.19□□□□□ -0.14
CCDC28A-202ENST00000611852 VCXQ9H320 206 aa14.19□□□□□ -0.14
CCDC28A-202ENST00000611852 POFUT1Q9H488 388 aa14.19□□□□□ -0.14
CCDC28A-202ENST00000611852 FBXO9Q9UK97 447 aaPredicted RBP14.19□□□□□ -0.14
CCDC28A-202ENST00000611852 KLHDC2Q9Y2U9 406 aa14.19□□□□□ -0.14
CCDC28A-202ENST00000611852 IGHV4-39P01824 125 aa14.18□□□□□ -0.14
CCDC28A-202ENST00000611852 GABRB1P18505 474 aa14.18□□□□□ -0.14
CCDC28A-202ENST00000611852 ALOX5APP20292 161 aa14.18□□□□□ -0.14
CCDC28A-202ENST00000611852 TUBG1P23258 451 aa14.18□□□□□ -0.14
CCDC28A-202ENST00000611852 GCH1P30793 250 aa14.18□□□□□ -0.14
CCDC28A-202ENST00000611852 HTR1FP30939 366 aa14.18□□□□□ -0.14
CCDC28A-202ENST00000611852 MPV17P39210 176 aa14.18□□□□□ -0.14
CCDC28A-202ENST00000611852 OPRL1P41146 370 aa14.18□□□□□ -0.14
CCDC28A-202ENST00000611852 SLC15A1P46059 708 aa14.18□□□□□ -0.14
CCDC28A-202ENST00000611852 PPOXP50336 477 aa14.18□□□□□ -0.14
CCDC28A-202ENST00000611852 NUDT6P53370 316 aa14.18□□□□□ -0.14
CCDC28A-202ENST00000611852 SELENOVP59797 346 aa14.18□□□□□ -0.14
CCDC28A-202ENST00000611852 TAF13Q15543 124 aa14.18□□□□□ -0.14
CCDC28A-202ENST00000611852 TMEM255AQ5JRV8 349 aa14.18□□□□□ -0.14
CCDC28A-202ENST00000611852 NAA40Q86UY6 237 aa14.18□□□□□ -0.14
CCDC28A-202ENST00000611852 THEM6Q8WUY1 208 aa14.18□□□□□ -0.14
CCDC28A-202ENST00000611852 RFKQ969G6 155 aa14.18□□□□□ -0.14
CCDC28A-202ENST00000611852 COG8Q96MW5 612 aa14.18□□□□□ -0.14
CCDC28A-202ENST00000611852 KCNJ15Q99712 375 aa14.18□□□□□ -0.14
CCDC28A-202ENST00000611852 C1QTNF5Q9BXJ0 243 aa14.18□□□□□ -0.14
CCDC28A-202ENST00000611852 ADGRL4Q9HBW9 690 aa14.18□□□□□ -0.14
CCDC28A-202ENST00000611852 TUBG2Q9NRH3 451 aa14.18□□□□□ -0.14
CCDC28A-202ENST00000611852 WARS2Q9UGM6 360 aaKnown RBP14.18□□□□□ -0.14
CCDC28A-202ENST00000611852 A0A1W2PPW3 197 aa14.17□□□□□ -0.14
CCDC28A-202ENST00000611852 H3BSA7 217 aa14.17□□□□□ -0.14
CCDC28A-202ENST00000611852 IGHV3-13P01766 116 aa14.17□□□□□ -0.14
CCDC28A-202ENST00000611852 GRB2P62993 217 aaKnown RBP14.17□□□□□ -0.14
CCDC28A-202ENST00000611852 MAD2L1BPQ15013 274 aaPredicted RBP14.17□□□□□ -0.14
CCDC28A-202ENST00000611852 OCLNQ16625 522 aa14.17□□□□□ -0.14
CCDC28A-202ENST00000611852 DRAM2Q6UX65 266 aa14.17□□□□□ -0.14
CCDC28A-202ENST00000611852 IZUMO2Q6UXV1 221 aa14.17□□□□□ -0.14
CCDC28A-202ENST00000611852 ENTHD1Q8IYW4 607 aa14.17□□□□□ -0.14
CCDC28A-202ENST00000611852 ZCCHC24Q8N2G6 241 aaKnown RBP14.17□□□□□ -0.14
CCDC28A-202ENST00000611852 ZNF555Q8NEP9 628 aa14.17□□□□□ -0.14
CCDC28A-202ENST00000611852 ZNF184Q99676 751 aaPredicted RBP14.17□□□□□ -0.14
CCDC28A-202ENST00000611852 VRK1Q99986 396 aaPredicted RBP14.17□□□□□ -0.14
CCDC28A-202ENST00000611852 DYNLRB1Q9NP97 96 aa14.17□□□□□ -0.14
CCDC28A-202ENST00000611852 TAAR3PQ9P1P4 343 aa14.17□□□□□ -0.14
CCDC28A-202ENST00000611852 AASSQ9UDR5 926 aa14.17□□□□□ -0.14
CCDC28A-202ENST00000611852 LAMP5Q9UJQ1 280 aa14.17□□□□□ -0.14
CCDC28A-202ENST00000611852 MAP1AP78559 2803 aaPredicted RBP14.17□□□□□ -0.14
CCDC28A-202ENST00000611852 M0R233 179 aa14.16□□□□□ -0.14
CCDC28A-202ENST00000611852 MPZL2O60487 215 aa14.16□□□□□ -0.14
CCDC28A-202ENST00000611852 ENTPD6O75354 484 aa14.16□□□□□ -0.14
CCDC28A-202ENST00000611852 ADRA2AP08913 450 aa14.16□□□□□ -0.14
CCDC28A-202ENST00000611852 SBK2P0C263 348 aa14.16□□□□□ -0.14
CCDC28A-202ENST00000611852 ALDH3B1P43353 468 aa14.16□□□□□ -0.14
CCDC28A-202ENST00000611852 SLC6A9P48067 706 aa14.16□□□□□ -0.14
CCDC28A-202ENST00000611852 PRKXP51817 358 aa14.16□□□□□ -0.14
CCDC28A-202ENST00000611852 TMED1Q13445 227 aa14.16□□□□□ -0.14
CCDC28A-202ENST00000611852 Q5PR19 223 aa14.16□□□□□ -0.14
CCDC28A-202ENST00000611852 MEDAGQ5VYS4 303 aa14.16□□□□□ -0.14
CCDC28A-202ENST00000611852 SHEQ5VZ18 495 aa14.16□□□□□ -0.14
CCDC28A-202ENST00000611852 OR51G2Q8NGK0 314 aa14.16□□□□□ -0.14
CCDC28A-202ENST00000611852 OR5L1Q8NGL2 311 aa14.16□□□□□ -0.14
CCDC28A-202ENST00000611852 RHOXF1Q8NHV9 184 aa14.16□□□□□ -0.14
CCDC28A-202ENST00000611852 SORCS2Q96PQ0 1159 aa14.16□□□□□ -0.14
CCDC28A-202ENST00000611852 SLCO1C1Q9NYB5 712 aa14.16□□□□□ -0.14
CCDC28A-202ENST00000611852 COPS3Q9UNS2 423 aa14.16□□□□□ -0.14
CCDC28A-202ENST00000611852 TMEM14AQ9Y6G1 99 aa14.16□□□□□ -0.14
CCDC28A-202ENST00000611852 LCATP04180 440 aa14.15□□□□□ -0.14
CCDC28A-202ENST00000611852 H2BFMP0C1H6 154 aa14.15□□□□□ -0.14
CCDC28A-202ENST00000611852 ANOS1P23352 680 aa14.15□□□□□ -0.14
CCDC28A-202ENST00000611852 HSD11B1P28845 292 aa14.15□□□□□ -0.14
CCDC28A-202ENST00000611852 POU4F2Q12837 409 aa14.15□□□□□ -0.14
CCDC28A-202ENST00000611852 PSG7Q13046 419 aa14.15□□□□□ -0.14
CCDC28A-202ENST00000611852 NKPD1Q17RQ9 610 aa14.15□□□□□ -0.14
CCDC28A-202ENST00000611852 PRSS57Q6UWY2 283 aa14.15□□□□□ -0.14
CCDC28A-202ENST00000611852 SPNS3Q6ZMD2 512 aa14.15□□□□□ -0.14
CCDC28A-202ENST00000611852 SLC35F2Q8IXU6 374 aa14.15□□□□□ -0.14
CCDC28A-202ENST00000611852 MS4A5Q9H3V2 200 aa14.15□□□□□ -0.14
CCDC28A-202ENST00000611852 BARX1Q9HBU1 254 aaPredicted RBP14.15□□□□□ -0.14
CCDC28A-202ENST00000611852 CLN6Q9NWW5 311 aa14.15□□□□□ -0.14
CCDC28A-202ENST00000611852 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP14.15□□□□□ -0.14
CCDC28A-202ENST00000611852 AKAP9Q99996 3911 aa14.15□□□□□ -0.14
CCDC28A-202ENST00000611852 PRR32B1ATL7 298 aa14.15□□□□□ -0.14
CCDC28A-202ENST00000611852 EFNA4P52798 201 aa14.15□□□□□ -0.14
CCDC28A-202ENST00000611852 ADARB1P78563 741 aaKnown RBP14.15□□□□□ -0.14
CCDC28A-202ENST00000611852 HLXQ14774 488 aaPredicted RBP14.15□□□□□ -0.14
CCDC28A-202ENST00000611852 MOGQ16653 247 aa14.15□□□□□ -0.14
CCDC28A-202ENST00000611852 SNAI3Q3KNW1 292 aa14.15□□□□□ -0.14
CCDC28A-202ENST00000611852 ALKBH6Q3KRA9 238 aa14.15□□□□□ -0.14
CCDC28A-202ENST00000611852 TTC23Q5W5X9 447 aa14.15□□□□□ -0.14
CCDC28A-202ENST00000611852 KCTD18Q6PI47 426 aaPredicted RBP14.15□□□□□ -0.14
CCDC28A-202ENST00000611852 LRRN1Q6UXK5 716 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms