RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 CCL2P13500 99 aa12.43□□□□□ -0.42
UPF1-211ENST00000600868 ZNF35P13682 527 aa12.43□□□□□ -0.42
UPF1-211ENST00000600868 CX3CR1P49238 355 aa12.43□□□□□ -0.42
UPF1-211ENST00000600868 PRKXP51817 358 aa12.43□□□□□ -0.42
UPF1-211ENST00000600868 WNT4P56705 351 aa12.43□□□□□ -0.42
UPF1-211ENST00000600868 PSMA6P60900 246 aaKnown RBP12.43□□□□□ -0.42
UPF1-211ENST00000600868 TBCEQ15813 527 aaPredicted RBP12.43□□□□□ -0.42
UPF1-211ENST00000600868 ZNF829Q3KNS6 432 aaPredicted RBP12.43□□□□□ -0.42
UPF1-211ENST00000600868 BEX5Q5H9J7 111 aa12.43□□□□□ -0.42
UPF1-211ENST00000600868 OR2G6Q5TZ20 316 aa12.43□□□□□ -0.42
UPF1-211ENST00000600868 DRAM2Q6UX65 266 aa12.43□□□□□ -0.42
UPF1-211ENST00000600868 MEX3BQ6ZN04 569 aaKnown RBP12.43□□□□□ -0.42
UPF1-211ENST00000600868 TSPAN14Q8NG11 270 aa12.43□□□□□ -0.42
UPF1-211ENST00000600868 HAVCR2Q8TDQ0 301 aa12.43□□□□□ -0.42
UPF1-211ENST00000600868 SPRYD4Q8WW59 207 aaPredicted RBP12.43□□□□□ -0.42
UPF1-211ENST00000600868 PELI1Q96FA3 418 aa12.43□□□□□ -0.42
UPF1-211ENST00000600868 ZNF799Q96GE5 643 aa12.43□□□□□ -0.42
UPF1-211ENST00000600868 DOK1Q99704 481 aa12.43□□□□□ -0.42
UPF1-211ENST00000600868 SPOCK3Q9BQ16 436 aa12.43□□□□□ -0.42
UPF1-211ENST00000600868 ESRP2Q9H6T0 727 aaKnown RBP12.43□□□□□ -0.42
UPF1-211ENST00000600868 CDH20Q9HBT6 801 aa12.43□□□□□ -0.42
UPF1-211ENST00000600868 TENM4Q6N022 2769 aa12.43□□□□□ -0.42
UPF1-211ENST00000600868 ANKHD1Q8IWZ3 2542 aaKnown RBP12.43□□□□□ -0.42
UPF1-211ENST00000600868 IGHV2OR16-5A0A0B4J2B6 119 aa12.42□□□□□ -0.42
UPF1-211ENST00000600868 MAGEA13PA6NCF6 341 aa12.42□□□□□ -0.42
UPF1-211ENST00000600868 SRSF10O75494 262 aaKnown RBP12.42□□□□□ -0.42
UPF1-211ENST00000600868 CRYAAP02489 173 aa12.42□□□□□ -0.42
UPF1-211ENST00000600868 PCSK6P29122 969 aa12.42□□□□□ -0.42
UPF1-211ENST00000600868 MMP16P51512 607 aa12.42□□□□□ -0.42
UPF1-211ENST00000600868 EMX1Q04741 257 aaPredicted RBP12.42□□□□□ -0.42
UPF1-211ENST00000600868 HGFACQ04756 655 aa12.42□□□□□ -0.42
UPF1-211ENST00000600868 NCMAPQ5T1S8 102 aa12.42□□□□□ -0.42
UPF1-211ENST00000600868 FDX2Q6P4F2 183 aa12.42□□□□□ -0.42
UPF1-211ENST00000600868 ARL9Q6T311 187 aa12.42□□□□□ -0.42
UPF1-211ENST00000600868 COLCA1Q6ZS62 124 aa12.42□□□□□ -0.42
UPF1-211ENST00000600868 PAQR4Q8N4S7 273 aaPredicted RBP12.42□□□□□ -0.42
UPF1-211ENST00000600868 ZNF283Q8N7M2 679 aa12.42□□□□□ -0.42
UPF1-211ENST00000600868 RORBQ92753 470 aa12.42□□□□□ -0.42
UPF1-211ENST00000600868 RNF166Q96A37 237 aaPredicted RBP12.42□□□□□ -0.42
UPF1-211ENST00000600868 C4orf45Q96LM5 186 aa12.42□□□□□ -0.42
UPF1-211ENST00000600868 C1QTNF5Q9BXJ0 243 aa12.42□□□□□ -0.42
UPF1-211ENST00000600868 SP140LQ9H930 580 aa12.42□□□□□ -0.42
UPF1-211ENST00000600868 ACOT13Q9NPJ3 140 aa12.42□□□□□ -0.42
UPF1-211ENST00000600868 ACOXLQ9NUZ1 547 aa12.42□□□□□ -0.42
UPF1-211ENST00000600868 TBCCD1Q9NVR7 557 aa12.42□□□□□ -0.42
UPF1-211ENST00000600868 BABAM2Q9NXR7 383 aa12.42□□□□□ -0.42
UPF1-211ENST00000600868 LSM2Q9Y333 95 aaKnown RBP12.42□□□□□ -0.42
UPF1-211ENST00000600868 GRIP1Q9Y3R0 1128 aa12.42□□□□□ -0.42
UPF1-211ENST00000600868 R4GMQ9 66 aa12.42□□□□□ -0.42
UPF1-211ENST00000600868 HELZ2Q9BYK8 2649 aaKnown RBP12.42□□□□□ -0.42
UPF1-211ENST00000600868 RTTNQ86VV8 2226 aa12.41□□□□□ -0.42
UPF1-211ENST00000600868 LRRK2Q5S007 2527 aa12.41□□□□□ -0.42
UPF1-211ENST00000600868 TMEM269A0A1B0GVZ9 245 aa12.41□□□□□ -0.42
UPF1-211ENST00000600868 TRIM64CA6NLI5 447 aa12.41□□□□□ -0.42
UPF1-211ENST00000600868 DEFB108AA8MXU0 73 aa12.41□□□□□ -0.42
UPF1-211ENST00000600868 J3QW42 95 aa12.41□□□□□ -0.42
UPF1-211ENST00000600868 RPP14O95059 124 aaKnown RBP12.41□□□□□ -0.42
UPF1-211ENST00000600868 PCMT1P22061 227 aa12.41□□□□□ -0.42
UPF1-211ENST00000600868 CCNOP22674 350 aa12.41□□□□□ -0.42
UPF1-211ENST00000600868 CALCRP30988 508 aa12.41□□□□□ -0.42
UPF1-211ENST00000600868 WNT5AP41221 380 aa12.41□□□□□ -0.42
UPF1-211ENST00000600868 MAP2K4P45985 399 aa12.41□□□□□ -0.42
UPF1-211ENST00000600868 SLC6A9P48067 706 aa12.41□□□□□ -0.42
UPF1-211ENST00000600868 TGM4P49221 684 aa12.41□□□□□ -0.42
UPF1-211ENST00000600868 RGS6P49758 472 aa12.41□□□□□ -0.42
UPF1-211ENST00000600868 GBX2P52951 348 aaPredicted RBP12.41□□□□□ -0.42
UPF1-211ENST00000600868 NR1H2P55055 460 aa12.41□□□□□ -0.42
UPF1-211ENST00000600868 ZNF121P58317 390 aaPredicted RBP12.41□□□□□ -0.42
UPF1-211ENST00000600868 BSPH1Q075Z2 132 aa12.41□□□□□ -0.42
UPF1-211ENST00000600868 ACSM1Q08AH1 577 aa12.41□□□□□ -0.42
UPF1-211ENST00000600868 DAZAP2Q15038 168 aaPredicted RBP12.41□□□□□ -0.42
UPF1-211ENST00000600868 SPHARQ15513 63 aa12.41□□□□□ -0.42
UPF1-211ENST00000600868 CCDC58Q4VC31 144 aa12.41□□□□□ -0.42
UPF1-211ENST00000600868 PRSS45Q7RTY3 260 aa12.41□□□□□ -0.42
UPF1-211ENST00000600868 NAA40Q86UY6 237 aa12.41□□□□□ -0.42
UPF1-211ENST00000600868 GATAD2BQ8WXI9 593 aa12.41□□□□□ -0.42
UPF1-211ENST00000600868 PLPPR2Q96GM1 343 aa12.41□□□□□ -0.42
UPF1-211ENST00000600868 OR5M11Q96RB7 305 aa12.41□□□□□ -0.42
UPF1-211ENST00000600868 KCNS3Q9BQ31 491 aa12.41□□□□□ -0.42
UPF1-211ENST00000600868 FAM206AQ9NX38 181 aa12.41□□□□□ -0.42
UPF1-211ENST00000600868 EIF3KQ9UBQ5 218 aaKnown RBP12.41□□□□□ -0.42
UPF1-211ENST00000600868 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.4□□□□□ -0.42
UPF1-211ENST00000600868 LOC110117498-PIK3R3F6TDL0 507 aa12.4□□□□□ -0.42
UPF1-211ENST00000600868 SIAH2O43255 324 aa12.4□□□□□ -0.42
UPF1-211ENST00000600868 GOSR1O95249 250 aa12.4□□□□□ -0.42
UPF1-211ENST00000600868 PNPP00491 289 aa12.4□□□□□ -0.42
UPF1-211ENST00000600868 LOXP28300 417 aaPredicted RBP12.4□□□□□ -0.42
UPF1-211ENST00000600868 PSMB10P40306 273 aa12.4□□□□□ -0.42
UPF1-211ENST00000600868 BDH1Q02338 343 aa12.4□□□□□ -0.42
UPF1-211ENST00000600868 MFGE8Q08431 387 aaPredicted RBP12.4□□□□□ -0.42
UPF1-211ENST00000600868 ZNF544Q6NX49 715 aa12.4□□□□□ -0.42
UPF1-211ENST00000600868 UNQ6126/PRO20091Q6UXV3 157 aa12.4□□□□□ -0.42
UPF1-211ENST00000600868 ZNF367Q7RTV3 350 aa12.4□□□□□ -0.42
UPF1-211ENST00000600868 CATSPERDQ86XM0 798 aa12.4□□□□□ -0.42
UPF1-211ENST00000600868 KLBQ86Z14 1044 aa12.4□□□□□ -0.42
UPF1-211ENST00000600868 C1orf174Q8IYL3 243 aa12.4□□□□□ -0.42
UPF1-211ENST00000600868 OR52H1Q8NGJ2 320 aa12.4□□□□□ -0.42
UPF1-211ENST00000600868 FCGR1BQ92637 280 aa12.4□□□□□ -0.42
UPF1-211ENST00000600868 APOBEC3DQ96AK3 386 aaPredicted RBP12.4□□□□□ -0.42
UPF1-211ENST00000600868 RADILQ96JH8 1075 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms