RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 NXNL2Q5VZ03 156 aa16.64■□□□□ 0.25
SHKBP1-221ENST00000599833 PRSS45Q7RTY3 260 aa16.64■□□□□ 0.25
SHKBP1-221ENST00000599833 UBE2FQ969M7 185 aa16.64■□□□□ 0.25
SHKBP1-221ENST00000599833 PLEKHA8Q96JA3 519 aa16.64■□□□□ 0.25
SHKBP1-221ENST00000599833 HRASLS5Q96KN8 279 aa16.64■□□□□ 0.25
SHKBP1-221ENST00000599833 VRK1Q99986 396 aaPredicted RBP16.64■□□□□ 0.25
SHKBP1-221ENST00000599833 C9orf16Q9BUW7 83 aa16.64■□□□□ 0.25
SHKBP1-221ENST00000599833 TUBG2Q9NRH3 451 aa16.64■□□□□ 0.25
SHKBP1-221ENST00000599833 CSPG4Q6UVK1 2322 aa16.64■□□□□ 0.25
SHKBP1-221ENST00000599833 NF1P21359 2839 aa16.64■□□□□ 0.25
SHKBP1-221ENST00000599833 ZSCAN5BA6NJL1 495 aa16.63■□□□□ 0.25
SHKBP1-221ENST00000599833 VWC2LB2RUY7 222 aa16.63■□□□□ 0.25
SHKBP1-221ENST00000599833 F5H5K5 113 aa16.63■□□□□ 0.25
SHKBP1-221ENST00000599833 CD99P14209 185 aa16.63■□□□□ 0.25
SHKBP1-221ENST00000599833 OPRL1P41146 370 aa16.63■□□□□ 0.25
SHKBP1-221ENST00000599833 NAA10P41227 235 aaPredicted RBP16.63■□□□□ 0.25
SHKBP1-221ENST00000599833 NUDT6P53370 316 aa16.63■□□□□ 0.25
SHKBP1-221ENST00000599833 HCCSP53701 268 aa16.63■□□□□ 0.25
SHKBP1-221ENST00000599833 EIF2B1Q14232 305 aaKnown RBP16.63■□□□□ 0.25
SHKBP1-221ENST00000599833 HLXQ14774 488 aaPredicted RBP16.63■□□□□ 0.25
SHKBP1-221ENST00000599833 SNAI3Q3KNW1 292 aa16.63■□□□□ 0.25
SHKBP1-221ENST00000599833 ZIK1Q3SY52 487 aaPredicted RBP16.63■□□□□ 0.25
SHKBP1-221ENST00000599833 ARL9Q6T311 187 aa16.63■□□□□ 0.25
SHKBP1-221ENST00000599833 FBXW12Q6X9E4 464 aa16.63■□□□□ 0.25
SHKBP1-221ENST00000599833 Q6ZR03 302 aa16.63■□□□□ 0.25
SHKBP1-221ENST00000599833 MEPCEQ7L2J0 689 aaKnown RBP16.63■□□□□ 0.25
SHKBP1-221ENST00000599833 C10orf105Q8TEF2 133 aa16.63■□□□□ 0.25
SHKBP1-221ENST00000599833 APOBEC3DQ96AK3 386 aaPredicted RBP16.63■□□□□ 0.25
SHKBP1-221ENST00000599833 HAVCR1Q96D42 359 aa16.63■□□□□ 0.25
SHKBP1-221ENST00000599833 IL4I1Q96RQ9 567 aa16.63■□□□□ 0.25
SHKBP1-221ENST00000599833 TEX12Q9BXU0 123 aa16.63■□□□□ 0.25
SHKBP1-221ENST00000599833 TOR3AQ9H497 397 aa16.63■□□□□ 0.25
SHKBP1-221ENST00000599833 DYNLRB1Q9NP97 96 aa16.63■□□□□ 0.25
SHKBP1-221ENST00000599833 TANC2Q9HCD6 1990 aa16.63■□□□□ 0.25
SHKBP1-221ENST00000599833 NIPBLQ6KC79 2804 aaeCLIP16.62■□□□□ 0.25
SHKBP1-221ENST00000599833 A0A1W2PPW3 197 aa16.62■□□□□ 0.25
SHKBP1-221ENST00000599833 C17orf100A8MU93 164 aa16.62■□□□□ 0.25
SHKBP1-221ENST00000599833 ZNF878C9JN71 531 aa16.62■□□□□ 0.25
SHKBP1-221ENST00000599833 H7C1Q1 480 aa16.62■□□□□ 0.25
SHKBP1-221ENST00000599833 M0R135 149 aa16.62■□□□□ 0.25
SHKBP1-221ENST00000599833 HPXP02790 462 aa16.62■□□□□ 0.25
SHKBP1-221ENST00000599833 ANPEPP15144 967 aa16.62■□□□□ 0.25
SHKBP1-221ENST00000599833 GABRB1P18505 474 aa16.62■□□□□ 0.25
SHKBP1-221ENST00000599833 ALOX5APP20292 161 aa16.62■□□□□ 0.25
SHKBP1-221ENST00000599833 MAGEB1P43366 347 aa16.62■□□□□ 0.25
SHKBP1-221ENST00000599833 RCN1Q15293 331 aa16.62■□□□□ 0.25
SHKBP1-221ENST00000599833 UNQ6126/PRO20091Q6UXV3 157 aa16.62■□□□□ 0.25
SHKBP1-221ENST00000599833 RHOUQ7L0Q8 258 aa16.62■□□□□ 0.25
SHKBP1-221ENST00000599833 RFLNBQ8N5W9 214 aa16.62■□□□□ 0.25
SHKBP1-221ENST00000599833 NEU4Q8WWR8 484 aaPredicted RBP16.62■□□□□ 0.25
SHKBP1-221ENST00000599833 CMBLQ96DG6 245 aa16.62■□□□□ 0.25
SHKBP1-221ENST00000599833 ZNF799Q96GE5 643 aa16.62■□□□□ 0.25
SHKBP1-221ENST00000599833 KCNJ15Q99712 375 aa16.62■□□□□ 0.25
SHKBP1-221ENST00000599833 PRRG3Q9BZD7 231 aa16.62■□□□□ 0.25
SHKBP1-221ENST00000599833 RAB1BQ9H0U4 201 aa16.62■□□□□ 0.25
SHKBP1-221ENST00000599833 MS4A5Q9H3V2 200 aa16.62■□□□□ 0.25
SHKBP1-221ENST00000599833 ADGRL4Q9HBW9 690 aa16.62■□□□□ 0.25
SHKBP1-221ENST00000599833 SLCO1C1Q9NYB5 712 aa16.62■□□□□ 0.25
SHKBP1-221ENST00000599833 HAO2Q9NYQ3 351 aa16.62■□□□□ 0.25
SHKBP1-221ENST00000599833 PTTG3PQ9NZH4 202 aa16.62■□□□□ 0.25
SHKBP1-221ENST00000599833 PURGQ9UJV8 347 aaKnown RBP16.62■□□□□ 0.25
SHKBP1-221ENST00000599833 COPS3Q9UNS2 423 aa16.62■□□□□ 0.25
SHKBP1-221ENST00000599833 ABCA2Q9BZC7 2435 aa16.62■□□□□ 0.25
SHKBP1-221ENST00000599833 A0A1B0GWJ7 208 aa16.61■□□□□ 0.25
SHKBP1-221ENST00000599833 BAG2O95816 211 aa16.61■□□□□ 0.25
SHKBP1-221ENST00000599833 ADH4P08319 380 aa16.61■□□□□ 0.25
SHKBP1-221ENST00000599833 ELF3P78545 371 aaPredicted RBP16.61■□□□□ 0.25
SHKBP1-221ENST00000599833 KRTAP1-1Q07627 177 aa16.61■□□□□ 0.25
SHKBP1-221ENST00000599833 SPRNQ5BIV9 151 aa16.61■□□□□ 0.25
SHKBP1-221ENST00000599833 ZBTB49Q6ZSB9 765 aa16.61■□□□□ 0.25
SHKBP1-221ENST00000599833 SPATC1Q76KD6 591 aa16.61■□□□□ 0.25
SHKBP1-221ENST00000599833 SHFQ7M4L6 423 aa16.61■□□□□ 0.25
SHKBP1-221ENST00000599833 SLC16A9Q7RTY1 509 aa16.61■□□□□ 0.25
SHKBP1-221ENST00000599833 STMN2Q93045 179 aa16.61■□□□□ 0.25
SHKBP1-221ENST00000599833 EME1Q96AY2 570 aa16.61■□□□□ 0.25
SHKBP1-221ENST00000599833 NKIRAS2Q9NYR9 191 aa16.61■□□□□ 0.25
SHKBP1-221ENST00000599833 LILRA1O75019 489 aa16.6■□□□□ 0.25
SHKBP1-221ENST00000599833 IGHV1-46P01743 117 aa16.6■□□□□ 0.25
SHKBP1-221ENST00000599833 MRPL3P09001 348 aaKnown RBP16.6■□□□□ 0.25
SHKBP1-221ENST00000599833 RAC2P15153 192 aa16.6■□□□□ 0.25
SHKBP1-221ENST00000599833 FOSL1P15407 271 aa16.6■□□□□ 0.25
SHKBP1-221ENST00000599833 GCH1P30793 250 aa16.6■□□□□ 0.25
SHKBP1-221ENST00000599833 TPTEP56180 551 aa16.6■□□□□ 0.25
SHKBP1-221ENST00000599833 NKPD1Q17RQ9 610 aa16.6■□□□□ 0.25
SHKBP1-221ENST00000599833 DRAM2Q6UX65 266 aa16.6■□□□□ 0.25
SHKBP1-221ENST00000599833 ZNF454Q8N9F8 522 aa16.6■□□□□ 0.25
SHKBP1-221ENST00000599833 OR8J1Q8NGP2 316 aa16.6■□□□□ 0.25
SHKBP1-221ENST00000599833 YIPF5Q969M3 257 aa16.6■□□□□ 0.25
SHKBP1-221ENST00000599833 SPTSSAQ969W0 71 aa16.6■□□□□ 0.25
SHKBP1-221ENST00000599833 C18orf12Q96KH6 178 aa16.6■□□□□ 0.25
SHKBP1-221ENST00000599833 COG8Q96MW5 612 aa16.6■□□□□ 0.25
SHKBP1-221ENST00000599833 ZNF582Q96NG8 517 aaPredicted RBP16.6■□□□□ 0.25
SHKBP1-221ENST00000599833 SMR3AQ99954 134 aa16.6■□□□□ 0.25
SHKBP1-221ENST00000599833 COPS4Q9BT78 406 aa16.6■□□□□ 0.25
SHKBP1-221ENST00000599833 YIPF3Q9GZM5 350 aa16.6■□□□□ 0.25
SHKBP1-221ENST00000599833 ZNF319Q9P2F9 582 aa16.6■□□□□ 0.25
SHKBP1-221ENST00000599833 RNF223E7ERA6 249 aa16.59■□□□□ 0.25
SHKBP1-221ENST00000599833 LYNX1G3V0Z9 82 aa16.59■□□□□ 0.25
SHKBP1-221ENST00000599833 CASQ2O14958 399 aaPredicted RBP16.59■□□□□ 0.25
SHKBP1-221ENST00000599833 LYNP07948 512 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms