RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 ANXA2P07355 339 aaKnown RBP13.3□□□□□ -0.28
TRIM28-209ENST00000597423 UBCP0CG48 685 aaKnown RBP13.3□□□□□ -0.28
TRIM28-209ENST00000597423 STOMP27105 288 aa13.3□□□□□ -0.28
TRIM28-209ENST00000597423 SLC6A9P48067 706 aa13.3□□□□□ -0.28
TRIM28-209ENST00000597423 TLE1Q04724 770 aa13.3□□□□□ -0.28
TRIM28-209ENST00000597423 STAC2Q6ZMT1 411 aa13.3□□□□□ -0.28
TRIM28-209ENST00000597423 FJX1Q86VR8 437 aa13.3□□□□□ -0.28
TRIM28-209ENST00000597423 FAM169BQ8N8A8 192 aa13.3□□□□□ -0.28
TRIM28-209ENST00000597423 OR52H1Q8NGJ2 320 aa13.3□□□□□ -0.28
TRIM28-209ENST00000597423 FGFBP3Q8TAT2 258 aa13.3□□□□□ -0.28
TRIM28-209ENST00000597423 PRR7Q8TB68 274 aa13.3□□□□□ -0.28
TRIM28-209ENST00000597423 HSD17B8Q92506 261 aa13.3□□□□□ -0.28
TRIM28-209ENST00000597423 ISOC1Q96CN7 298 aa13.3□□□□□ -0.28
TRIM28-209ENST00000597423 ZNF799Q96GE5 643 aa13.3□□□□□ -0.28
TRIM28-209ENST00000597423 PGAM5Q96HS1 289 aa13.3□□□□□ -0.28
TRIM28-209ENST00000597423 DOK1Q99704 481 aa13.3□□□□□ -0.28
TRIM28-209ENST00000597423 CHCHD6Q9BRQ6 235 aa13.3□□□□□ -0.28
TRIM28-209ENST00000597423 PBOV1Q9GZY1 135 aa13.3□□□□□ -0.28
TRIM28-209ENST00000597423 OR10A2Q9H208 303 aa13.3□□□□□ -0.28
TRIM28-209ENST00000597423 FAM206AQ9NX38 181 aa13.3□□□□□ -0.28
TRIM28-209ENST00000597423 SF3B6Q9Y3B4 125 aaKnown RBP13.3□□□□□ -0.28
TRIM28-209ENST00000597423 LOC100506127A0A0U1RQW1 187 aa13.29□□□□□ -0.28
TRIM28-209ENST00000597423 OR4C45A6NMZ5 311 aa13.29□□□□□ -0.28
TRIM28-209ENST00000597423 SLC22A1O15245 554 aa13.29□□□□□ -0.28
TRIM28-209ENST00000597423 ZFPL1O95159 310 aa13.29□□□□□ -0.28
TRIM28-209ENST00000597423 GABARAPO95166 117 aa13.29□□□□□ -0.28
TRIM28-209ENST00000597423 PNPP00491 289 aa13.29□□□□□ -0.28
TRIM28-209ENST00000597423 ISG15P05161 165 aa13.29□□□□□ -0.28
TRIM28-209ENST00000597423 PPP3CBP16298 524 aa13.29□□□□□ -0.28
TRIM28-209ENST00000597423 ZNF12P17014 697 aa13.29□□□□□ -0.28
TRIM28-209ENST00000597423 MAPK3P27361 379 aaPredicted RBP13.29□□□□□ -0.28
TRIM28-209ENST00000597423 OTX1P32242 354 aaPredicted RBP13.29□□□□□ -0.28
TRIM28-209ENST00000597423 CRYBB2P43320 205 aa13.29□□□□□ -0.28
TRIM28-209ENST00000597423 ZNF121P58317 390 aaPredicted RBP13.29□□□□□ -0.28
TRIM28-209ENST00000597423 NANOS3P60323 173 aaKnown RBP13.29□□□□□ -0.28
TRIM28-209ENST00000597423 RPS25P62851 125 aaKnown RBP13.29□□□□□ -0.28
TRIM28-209ENST00000597423 C4orf17Q53FE4 359 aa13.29□□□□□ -0.28
TRIM28-209ENST00000597423 WDR38Q5JTN6 314 aa13.29□□□□□ -0.28
TRIM28-209ENST00000597423 UNQ6126/PRO20091Q6UXV3 157 aa13.29□□□□□ -0.28
TRIM28-209ENST00000597423 MDP1Q86V88 176 aa13.29□□□□□ -0.28
TRIM28-209ENST00000597423 LIX1LQ8IVB5 337 aa13.29□□□□□ -0.28
TRIM28-209ENST00000597423 ELMOD2Q8IZ81 293 aa13.29□□□□□ -0.28
TRIM28-209ENST00000597423 CCDC54Q8NEL0 328 aa13.29□□□□□ -0.28
TRIM28-209ENST00000597423 IL17RDQ8NFM7 739 aa13.29□□□□□ -0.28
TRIM28-209ENST00000597423 LILRB4Q8NHJ6 448 aa13.29□□□□□ -0.28
TRIM28-209ENST00000597423 RPS4Y2Q8TD47 263 aa13.29□□□□□ -0.28
TRIM28-209ENST00000597423 GPR148Q8TDV2 347 aa13.29□□□□□ -0.28
TRIM28-209ENST00000597423 DOCK7Q96N67 2140 aa13.29□□□□□ -0.28
TRIM28-209ENST00000597423 RBM38Q9H0Z9 239 aaKnown RBP13.29□□□□□ -0.28
TRIM28-209ENST00000597423 OR51E2Q9H255 320 aa13.29□□□□□ -0.28
TRIM28-209ENST00000597423 BRD7Q9NPI1 651 aa13.29□□□□□ -0.28
TRIM28-209ENST00000597423 ZNF224Q9NZL3 707 aa13.29□□□□□ -0.28
TRIM28-209ENST00000597423 EIF3KQ9UBQ5 218 aaKnown RBP13.29□□□□□ -0.28
TRIM28-209ENST00000597423 NUFIP1Q9UHK0 495 aaKnown RBP13.29□□□□□ -0.28
TRIM28-209ENST00000597423 N6AMT1Q9Y5N5 214 aa13.29□□□□□ -0.28
TRIM28-209ENST00000597423 ITPR1Q14643 2758 aa13.29□□□□□ -0.28
TRIM28-209ENST00000597423 CACNA1BQ00975 2339 aa13.28□□□□□ -0.28
TRIM28-209ENST00000597423 LRRTM2O43300 516 aa13.28□□□□□ -0.28
TRIM28-209ENST00000597423 SRSF10O75494 262 aaKnown RBP13.28□□□□□ -0.28
TRIM28-209ENST00000597423 ARL6IP5O75915 188 aa13.28□□□□□ -0.28
TRIM28-209ENST00000597423 CRYGSP22914 178 aa13.28□□□□□ -0.28
TRIM28-209ENST00000597423 FGF9P31371 208 aaPredicted RBP13.28□□□□□ -0.28
TRIM28-209ENST00000597423 ASCL1P50553 236 aa13.28□□□□□ -0.28
TRIM28-209ENST00000597423 DOC2BQ14184 412 aa13.28□□□□□ -0.28
TRIM28-209ENST00000597423 TBC1D28Q2M2D7 210 aa13.28□□□□□ -0.28
TRIM28-209ENST00000597423 KRTAP27-1Q3LI81 207 aa13.28□□□□□ -0.28
TRIM28-209ENST00000597423 ACSM3Q53FZ2 586 aa13.28□□□□□ -0.28
TRIM28-209ENST00000597423 CD200R1LQ6Q8B3 271 aa13.28□□□□□ -0.28
TRIM28-209ENST00000597423 FAM57BQ71RH2 274 aa13.28□□□□□ -0.28
TRIM28-209ENST00000597423 CEACAM19Q7Z692 300 aa13.28□□□□□ -0.28
TRIM28-209ENST00000597423 PRSS35Q8N3Z0 413 aa13.28□□□□□ -0.28
TRIM28-209ENST00000597423 WDR31Q8NA23 367 aa13.28□□□□□ -0.28
TRIM28-209ENST00000597423 CPEB3Q8NE35 698 aaKnown RBP13.28□□□□□ -0.28
TRIM28-209ENST00000597423 KBTBD8Q8NFY9 601 aa13.28□□□□□ -0.28
TRIM28-209ENST00000597423 ITFG2Q969R8 447 aa13.28□□□□□ -0.28
TRIM28-209ENST00000597423 RNF166Q96A37 237 aaPredicted RBP13.28□□□□□ -0.28
TRIM28-209ENST00000597423 PGLYRP3Q96LB9 341 aa13.28□□□□□ -0.28
TRIM28-209ENST00000597423 PDCD1LG2Q9BQ51 273 aa13.28□□□□□ -0.28
TRIM28-209ENST00000597423 G6PC2Q9NQR9 355 aa13.28□□□□□ -0.28
TRIM28-209ENST00000597423 ZNF391Q9UJN7 358 aa13.28□□□□□ -0.28
TRIM28-209ENST00000597423 HHLA2Q9UM44 414 aa13.28□□□□□ -0.28
TRIM28-209ENST00000597423 PHF3Q92576 2039 aaKnown RBP13.27□□□□□ -0.28
TRIM28-209ENST00000597423 A0A1B0GVI7 797 aa13.27□□□□□ -0.29
TRIM28-209ENST00000597423 C5orf49A4QMS7 147 aa13.27□□□□□ -0.29
TRIM28-209ENST00000597423 GPX5O75715 221 aa13.27□□□□□ -0.29
TRIM28-209ENST00000597423 RAF1P04049 648 aa13.27□□□□□ -0.29
TRIM28-209ENST00000597423 LCATP04180 440 aa13.27□□□□□ -0.29
TRIM28-209ENST00000597423 ACSM4P0C7M7 580 aa13.27□□□□□ -0.29
TRIM28-209ENST00000597423 ACHEP22303 614 aa13.27□□□□□ -0.29
TRIM28-209ENST00000597423 GNLYP22749 145 aa13.27□□□□□ -0.29
TRIM28-209ENST00000597423 CFL1P23528 166 aaKnown RBP13.27□□□□□ -0.29
TRIM28-209ENST00000597423 APEX1P27695 318 aaKnown RBP13.27□□□□□ -0.29
TRIM28-209ENST00000597423 TUBA1BP68363 451 aa13.27□□□□□ -0.29
TRIM28-209ENST00000597423 FABP5Q01469 135 aa13.27□□□□□ -0.29
TRIM28-209ENST00000597423 MFGE8Q08431 387 aaPredicted RBP13.27□□□□□ -0.29
TRIM28-209ENST00000597423 FAM27E3Q08E93 113 aa13.27□□□□□ -0.29
TRIM28-209ENST00000597423 TSC22D1Q15714 1073 aa13.27□□□□□ -0.29
TRIM28-209ENST00000597423 CTF1Q16619 201 aa13.27□□□□□ -0.29
TRIM28-209ENST00000597423 RSPO1Q2MKA7 263 aaPredicted RBP13.27□□□□□ -0.29
TRIM28-209ENST00000597423 C3orf36Q3SXR2 165 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms