RNA–Protein interactions for RNA: ENST00000597146.1

LIG1-214, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-214ENST00000597146 DBPQ10586 325 aaPredicted RBP12.89□□□□□ -0.35
LIG1-214ENST00000597146 ARMC4Q5T2S8 1044 aa12.89□□□□□ -0.35
LIG1-214ENST00000597146 RFPL4BQ6ZWI9 263 aa12.89□□□□□ -0.35
LIG1-214ENST00000597146 KLF14Q8TD94 323 aaPredicted RBP12.89□□□□□ -0.35
LIG1-214ENST00000597146 SSMEM1Q8WWF3 244 aa12.89□□□□□ -0.35
LIG1-214ENST00000597146 HDAC2Q92769 488 aaKnown RBP12.89□□□□□ -0.35
LIG1-214ENST00000597146 FAM46AQ96IP4 442 aaKnown RBP12.89□□□□□ -0.35
LIG1-214ENST00000597146 ALG12Q9BV10 488 aa12.89□□□□□ -0.35
LIG1-214ENST00000597146 MRPL13Q9BYD1 178 aaKnown RBP12.89□□□□□ -0.35
LIG1-214ENST00000597146 RERGLQ9H628 205 aa12.89□□□□□ -0.35
LIG1-214ENST00000597146 NECAP2Q9NVZ3 263 aa12.89□□□□□ -0.35
LIG1-214ENST00000597146 NDUFAF4Q9P032 175 aa12.89□□□□□ -0.35
LIG1-214ENST00000597146 EIF3KQ9UBQ5 218 aaKnown RBP12.89□□□□□ -0.35
LIG1-214ENST00000597146 ZDHHC8Q9ULC8 765 aa12.89□□□□□ -0.35
LIG1-214ENST00000597146 A0A1W2PPL8 197 aa12.88□□□□□ -0.35
LIG1-214ENST00000597146 A0A1W2PRQ8 180 aa12.88□□□□□ -0.35
LIG1-214ENST00000597146 NPIPB13A6NJU9 1138 aa12.88□□□□□ -0.35
LIG1-214ENST00000597146 NPIPB4C9JG80 1138 aa12.88□□□□□ -0.35
LIG1-214ENST00000597146 ZNF205O95201 554 aa12.88□□□□□ -0.35
LIG1-214ENST00000597146 GADD45GO95257 159 aa12.88□□□□□ -0.35
LIG1-214ENST00000597146 SLC2A10O95528 541 aa12.88□□□□□ -0.35
LIG1-214ENST00000597146 CDAP32320 146 aa12.88□□□□□ -0.35
LIG1-214ENST00000597146 IFNGR2P38484 337 aa12.88□□□□□ -0.35
LIG1-214ENST00000597146 CENPAP49450 140 aa12.88□□□□□ -0.35
LIG1-214ENST00000597146 GNB2P62879 340 aa12.88□□□□□ -0.35
LIG1-214ENST00000597146 SPIBQ01892 262 aa12.88□□□□□ -0.35
LIG1-214ENST00000597146 EGR3Q06889 387 aa12.88□□□□□ -0.35
LIG1-214ENST00000597146 DGCR6Q14129 220 aa12.88□□□□□ -0.35
LIG1-214ENST00000597146 HIST3H3Q16695 136 aa12.88□□□□□ -0.35
LIG1-214ENST00000597146 SPATS1Q496A3 300 aa12.88□□□□□ -0.35
LIG1-214ENST00000597146 MBNL2Q5VZF2 373 aaKnown RBP12.88□□□□□ -0.35
LIG1-214ENST00000597146 TMPRSS11FQ6ZWK6 438 aa12.88□□□□□ -0.35
LIG1-214ENST00000597146 KLBQ86Z14 1044 aa12.88□□□□□ -0.35
LIG1-214ENST00000597146 ALDH16A1Q8IZ83 802 aa12.88□□□□□ -0.35
LIG1-214ENST00000597146 ZSCAN4Q8NAM6 433 aaPredicted RBP12.88□□□□□ -0.35
LIG1-214ENST00000597146 SGCDQ92629 289 aa12.88□□□□□ -0.35
LIG1-214ENST00000597146 SMURF2Q9HAU4 748 aa12.88□□□□□ -0.35
LIG1-214ENST00000597146 CYSLTR2Q9NS75 346 aa12.88□□□□□ -0.35
LIG1-214ENST00000597146 MAN2C1Q9NTJ4 1040 aa12.88□□□□□ -0.35
LIG1-214ENST00000597146 UNC119BA6NIH7 251 aa12.87□□□□□ -0.35
LIG1-214ENST00000597146 NDUFB2O95178 105 aa12.87□□□□□ -0.35
LIG1-214ENST00000597146 FAM107AO95990 144 aa12.87□□□□□ -0.35
LIG1-214ENST00000597146 FABP3P05413 133 aa12.87□□□□□ -0.35
LIG1-214ENST00000597146 SFTPBP07988 381 aa12.87□□□□□ -0.35
LIG1-214ENST00000597146 CD14P08571 375 aa12.87□□□□□ -0.35
LIG1-214ENST00000597146 MMP7P09237 267 aaPredicted RBP12.87□□□□□ -0.35
LIG1-214ENST00000597146 PCBD1P61457 104 aa12.87□□□□□ -0.35
LIG1-214ENST00000597146 MRPS34P82930 218 aaKnown RBP12.87□□□□□ -0.35
LIG1-214ENST00000597146 NRN1LQ496H8 165 aa12.87□□□□□ -0.35
LIG1-214ENST00000597146 UNQ6126/PRO20091Q6UXV3 157 aa12.87□□□□□ -0.35
LIG1-214ENST00000597146 FITM2Q8N6M3 262 aa12.87□□□□□ -0.35
LIG1-214ENST00000597146 SLC7A13Q8TCU3 470 aa12.87□□□□□ -0.35
LIG1-214ENST00000597146 PPP1R14AQ96A00 147 aa12.87□□□□□ -0.35
LIG1-214ENST00000597146 NUDT16L1Q9BRJ7 211 aaKnown RBP12.87□□□□□ -0.35
LIG1-214ENST00000597146 PCGF1Q9BSM1 259 aa12.87□□□□□ -0.35
LIG1-214ENST00000597146 KIR2DS1A0A191URI9 304 aa12.86□□□□□ -0.35
LIG1-214ENST00000597146 C12orf71A8MTZ7 269 aa12.86□□□□□ -0.35
LIG1-214ENST00000597146 TNFRSF13BO14836 293 aaPredicted RBP12.86□□□□□ -0.35
LIG1-214ENST00000597146 ARPC2O15144 300 aa12.86□□□□□ -0.35
LIG1-214ENST00000597146 OR10H3O60404 316 aa12.86□□□□□ -0.35
LIG1-214ENST00000597146 TSPAN19P0C672 248 aa12.86□□□□□ -0.35
LIG1-214ENST00000597146 FUT4P22083 530 aa12.86□□□□□ -0.35
LIG1-214ENST00000597146 GDI2P50395 445 aaKnown RBP12.86□□□□□ -0.35
LIG1-214ENST00000597146 FMODQ06828 376 aa12.86□□□□□ -0.35
LIG1-214ENST00000597146 PABPC1L2AQ5JQF8 200 aa12.86□□□□□ -0.35
LIG1-214ENST00000597146 C10orf128Q5T292 105 aa12.86□□□□□ -0.35
LIG1-214ENST00000597146 SLC25A47Q6Q0C1 308 aa12.86□□□□□ -0.35
LIG1-214ENST00000597146 MUC20Q8N307 709 aaPredicted RBP12.86□□□□□ -0.35
LIG1-214ENST00000597146 FAM86B1Q8N7N1 296 aa12.86□□□□□ -0.35
LIG1-214ENST00000597146 ABHD4Q8TB40 342 aa12.86□□□□□ -0.35
LIG1-214ENST00000597146 TBC1D15Q8TC07 691 aa12.86□□□□□ -0.35
LIG1-214ENST00000597146 ITLN1Q8WWA0 313 aa12.86□□□□□ -0.35
LIG1-214ENST00000597146 C7orf34Q96L11 122 aa12.86□□□□□ -0.35
LIG1-214ENST00000597146 LRGUKQ96M69 825 aa12.86□□□□□ -0.35
LIG1-214ENST00000597146 ZNF570Q96NI8 536 aa12.86□□□□□ -0.35
LIG1-214ENST00000597146 SEPHS2Q99611 448 aa12.86□□□□□ -0.35
LIG1-214ENST00000597146 CDADC1Q9BWV3 514 aa12.86□□□□□ -0.35
LIG1-214ENST00000597146 TOR3AQ9H497 397 aa12.86□□□□□ -0.35
LIG1-214ENST00000597146 C16orf95Q9H693 158 aa12.86□□□□□ -0.35
LIG1-214ENST00000597146 CGGBP1Q9UFW8 167 aaPredicted RBP12.86□□□□□ -0.35
LIG1-214ENST00000597146 CD300AQ9UGN4 299 aa12.86□□□□□ -0.35
LIG1-214ENST00000597146 TIMM10BQ9Y5J6 103 aa12.86□□□□□ -0.35
LIG1-214ENST00000597146 TRBV4-1A0A0J9YWV2 114 aa12.85□□□□□ -0.35
LIG1-214ENST00000597146 TMEM178BH3BS89 294 aa12.85□□□□□ -0.35
LIG1-214ENST00000597146 STOMP27105 288 aa12.85□□□□□ -0.35
LIG1-214ENST00000597146 LAP3P28838 519 aa12.85□□□□□ -0.35
LIG1-214ENST00000597146 RRM2P31350 389 aa12.85□□□□□ -0.35
LIG1-214ENST00000597146 LIPAP38571 399 aa12.85□□□□□ -0.35
LIG1-214ENST00000597146 MMP16P51512 607 aa12.85□□□□□ -0.35
LIG1-214ENST00000597146 RPS6KA3P51812 740 aa12.85□□□□□ -0.35
LIG1-214ENST00000597146 CDK5R2Q13319 367 aa12.85□□□□□ -0.35
LIG1-214ENST00000597146 ZMAT1Q5H9K5 638 aa12.85□□□□□ -0.35
LIG1-214ENST00000597146 MTX3Q5HYI7 312 aa12.85□□□□□ -0.35
LIG1-214ENST00000597146 GPR139Q6DWJ6 353 aa12.85□□□□□ -0.35
LIG1-214ENST00000597146 CYP2R1Q6VVX0 501 aa12.85□□□□□ -0.35
LIG1-214ENST00000597146 ZDHHC21Q8IVQ6 265 aa12.85□□□□□ -0.35
LIG1-214ENST00000597146 C11orf44Q8N8P7 122 aa12.85□□□□□ -0.35
LIG1-214ENST00000597146 OR2Z1Q8NG97 314 aa12.85□□□□□ -0.35
LIG1-214ENST00000597146 ITPKCQ96DU7 683 aa12.85□□□□□ -0.35
LIG1-214ENST00000597146 RSRC1Q96IZ7 334 aaKnown RBP12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms