RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 CEACAM1P13688 526 aa9.97□□□□□ -0.81
LIG3-204ENST00000585740 POU3F2P20265 443 aaPredicted RBP9.97□□□□□ -0.81
LIG3-204ENST00000585740 CSRP1P21291 193 aaKnown RBP9.97□□□□□ -0.81
LIG3-204ENST00000585740 CDK2P24941 298 aa9.97□□□□□ -0.81
LIG3-204ENST00000585740 CD96P40200 585 aa9.97□□□□□ -0.81
LIG3-204ENST00000585740 EIF1AXP47813 144 aaKnown RBP9.97□□□□□ -0.81
LIG3-204ENST00000585740 TAS2R20P59543 309 aa9.97□□□□□ -0.81
LIG3-204ENST00000585740 SSBP1Q04837 148 aaKnown RBP9.97□□□□□ -0.81
LIG3-204ENST00000585740 KLF9Q13886 244 aaPredicted RBP9.97□□□□□ -0.81
LIG3-204ENST00000585740 CARTPTQ16568 116 aa9.97□□□□□ -0.81
LIG3-204ENST00000585740 TATDN3Q17R31 274 aa9.97□□□□□ -0.81
LIG3-204ENST00000585740 C1orf100Q5SVJ3 147 aa9.97□□□□□ -0.81
LIG3-204ENST00000585740 ABLIM2Q6H8Q1 611 aa9.97□□□□□ -0.81
LIG3-204ENST00000585740 ANKRD16Q6P6B7 361 aa9.97□□□□□ -0.81
LIG3-204ENST00000585740 CFAP77Q6ZQR2 320 aa9.97□□□□□ -0.81
LIG3-204ENST00000585740 SIAH3Q8IW03 269 aa9.97□□□□□ -0.81
LIG3-204ENST00000585740 SERPINA12Q8IW75 414 aa9.97□□□□□ -0.81
LIG3-204ENST00000585740 C20orf196Q8IYI0 205 aa9.97□□□□□ -0.81
LIG3-204ENST00000585740 TMEM123Q8N131 208 aa9.97□□□□□ -0.81
LIG3-204ENST00000585740 DTX3Q8N9I9 347 aa9.97□□□□□ -0.81
LIG3-204ENST00000585740 DNAAF1Q8NEP3 725 aa9.97□□□□□ -0.81
LIG3-204ENST00000585740 OR10S1Q8NGN2 331 aa9.97□□□□□ -0.81
LIG3-204ENST00000585740 SLC7A6Q92536 515 aa9.97□□□□□ -0.81
LIG3-204ENST00000585740 PPP1R14AQ96A00 147 aa9.97□□□□□ -0.81
LIG3-204ENST00000585740 CPNE4Q96A23 557 aaPredicted RBP9.97□□□□□ -0.81
LIG3-204ENST00000585740 PTX4Q96A99 478 aa9.97□□□□□ -0.81
LIG3-204ENST00000585740 FAM3DQ96BQ1 224 aa9.97□□□□□ -0.81
LIG3-204ENST00000585740 ADGRG7Q96K78 797 aa9.97□□□□□ -0.81
LIG3-204ENST00000585740 SRXN1Q9BYN0 137 aa9.97□□□□□ -0.81
LIG3-204ENST00000585740 ULBP2Q9BZM5 246 aa9.97□□□□□ -0.81
LIG3-204ENST00000585740 ACTR6Q9GZN1 396 aa9.97□□□□□ -0.81
LIG3-204ENST00000585740 FOXD3Q9UJU5 478 aaPredicted RBP9.97□□□□□ -0.81
LIG3-204ENST00000585740 LOC390937A0A1W2PQ73 354 aa9.96□□□□□ -0.82
LIG3-204ENST00000585740 SMAD9O15198 467 aaKnown RBP9.96□□□□□ -0.82
LIG3-204ENST00000585740 WDPCPO95876 746 aa9.96□□□□□ -0.82
LIG3-204ENST00000585740 TTRP02766 147 aa9.96□□□□□ -0.82
LIG3-204ENST00000585740 HPNP05981 417 aa9.96□□□□□ -0.82
LIG3-204ENST00000585740 ZNF20P17024 532 aa9.96□□□□□ -0.82
LIG3-204ENST00000585740 ITGA3P26006 1051 aa9.96□□□□□ -0.82
LIG3-204ENST00000585740 HTR2CP28335 458 aa9.96□□□□□ -0.82
LIG3-204ENST00000585740 BDKRB2P30411 391 aa9.96□□□□□ -0.82
LIG3-204ENST00000585740 CDAP32320 146 aa9.96□□□□□ -0.82
LIG3-204ENST00000585740 PTH2RP49190 550 aa9.96□□□□□ -0.82
LIG3-204ENST00000585740 POU3F4P49335 361 aa9.96□□□□□ -0.82
LIG3-204ENST00000585740 CD300CQ08708 224 aa9.96□□□□□ -0.82
LIG3-204ENST00000585740 SNTB2Q13425 540 aaKnown RBP9.96□□□□□ -0.82
LIG3-204ENST00000585740 SGCAQ16586 387 aa9.96□□□□□ -0.82
LIG3-204ENST00000585740 C2orf76Q3KRA6 126 aa9.96□□□□□ -0.82
LIG3-204ENST00000585740 TBRG1Q3YBR2 411 aa9.96□□□□□ -0.82
LIG3-204ENST00000585740 ELFN2Q5R3F8 820 aa9.96□□□□□ -0.82
LIG3-204ENST00000585740 DOK3Q7L591 496 aa9.96□□□□□ -0.82
LIG3-204ENST00000585740 GGNQ86UU5 652 aa9.96□□□□□ -0.82
LIG3-204ENST00000585740 CDH26Q8IXH8 852 aa9.96□□□□□ -0.82
LIG3-204ENST00000585740 IL22RA1Q8N6P7 574 aa9.96□□□□□ -0.82
LIG3-204ENST00000585740 ZIC4Q8N9L1 334 aa9.96□□□□□ -0.82
LIG3-204ENST00000585740 OR2M7Q8NG81 312 aa9.96□□□□□ -0.82
LIG3-204ENST00000585740 OR51D1Q8NGF3 324 aa9.96□□□□□ -0.82
LIG3-204ENST00000585740 OR6F1Q8NGZ6 308 aa9.96□□□□□ -0.82
LIG3-204ENST00000585740 UBASH3BQ8TF42 649 aa9.96□□□□□ -0.82
LIG3-204ENST00000585740 SORCS2Q96PQ0 1159 aa9.96□□□□□ -0.82
LIG3-204ENST00000585740 UCN2Q96RP3 112 aa9.96□□□□□ -0.82
LIG3-204ENST00000585740 DEPPQ9NTK1 212 aa9.96□□□□□ -0.82
LIG3-204ENST00000585740 DDX28Q9NUL7 540 aaKnown RBP9.96□□□□□ -0.82
LIG3-204ENST00000585740 TAS2R8Q9NYW2 309 aa9.96□□□□□ -0.82
LIG3-204ENST00000585740 ASH2LQ9UBL3 628 aa9.96□□□□□ -0.82
LIG3-204ENST00000585740 KLF13Q9Y2Y9 288 aaPredicted RBP9.96□□□□□ -0.82
LIG3-204ENST00000585740 RBMX2Q9Y388 322 aaKnown RBP9.96□□□□□ -0.82
LIG3-204ENST00000585740 ALG5Q9Y673 324 aa9.96□□□□□ -0.82
LIG3-204ENST00000585740 FLNBO75369 2602 aaKnown RBP9.96□□□□□ -0.82
LIG3-204ENST00000585740 SMG1Q96Q15 3661 aaKnown RBP9.96□□□□□ -0.82
LIG3-204ENST00000585740 NCOA6Q14686 2063 aaPredicted RBP9.95□□□□□ -0.82
LIG3-204ENST00000585740 LOC400499M0QZD8 3231 aa9.95□□□□□ -0.82
LIG3-204ENST00000585740 IGHV3-15A0A0B4J1V0 119 aa9.95□□□□□ -0.82
LIG3-204ENST00000585740 H3BSH0 61 aa9.95□□□□□ -0.82
LIG3-204ENST00000585740 SULT1C2O00338 296 aa9.95□□□□□ -0.82
LIG3-204ENST00000585740 CTAG2O75638 210 aa9.95□□□□□ -0.82
LIG3-204ENST00000585740 SCGNO76038 276 aa9.95□□□□□ -0.82
LIG3-204ENST00000585740 NEURL1O76050 574 aa9.95□□□□□ -0.82
LIG3-204ENST00000585740 ITGA5P08648 1049 aa9.95□□□□□ -0.82
LIG3-204ENST00000585740 GABRA1P14867 456 aa9.95□□□□□ -0.82
LIG3-204ENST00000585740 KLK2P20151 261 aa9.95□□□□□ -0.82
LIG3-204ENST00000585740 RAB3AP20336 220 aa9.95□□□□□ -0.82
LIG3-204ENST00000585740 RAB6AP20340 208 aa9.95□□□□□ -0.82
LIG3-204ENST00000585740 CCL1P22362 96 aa9.95□□□□□ -0.82
LIG3-204ENST00000585740 FAUP35544 74 aaKnown RBP9.95□□□□□ -0.82
LIG3-204ENST00000585740 GNALP38405 381 aa9.95□□□□□ -0.82
LIG3-204ENST00000585740 CX3CR1P49238 355 aa9.95□□□□□ -0.82
LIG3-204ENST00000585740 RRADP55042 308 aa9.95□□□□□ -0.82
LIG3-204ENST00000585740 GFRA1P56159 465 aa9.95□□□□□ -0.82
LIG3-204ENST00000585740 HIST1H3AP68431 136 aa9.95□□□□□ -0.82
LIG3-204ENST00000585740 MRPS34P82930 218 aaKnown RBP9.95□□□□□ -0.82
LIG3-204ENST00000585740 FOXO1Q12778 655 aa9.95□□□□□ -0.82
LIG3-204ENST00000585740 CBX3Q13185 183 aa9.95□□□□□ -0.82
LIG3-204ENST00000585740 MFAP5Q13361 173 aa9.95□□□□□ -0.82
LIG3-204ENST00000585740 OR1C1Q15619 314 aa9.95□□□□□ -0.82
LIG3-204ENST00000585740 WIPI1Q5MNZ9 446 aaPredicted RBP9.95□□□□□ -0.82
LIG3-204ENST00000585740 HIST2H3PS2Q5TEC6 136 aa9.95□□□□□ -0.82
LIG3-204ENST00000585740 OLFML2AQ68BL7 652 aa9.95□□□□□ -0.82
LIG3-204ENST00000585740 ASPHD2Q6ICH7 369 aa9.95□□□□□ -0.82
LIG3-204ENST00000585740 DNM1P46Q6ZS02 220 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms