RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 GCDHQ92947 438 aaPredicted RBP17.24■□□□□ 0.35
SHMT1-209ENST00000582653 APOBEC3DQ96AK3 386 aaPredicted RBP17.24■□□□□ 0.35
SHMT1-209ENST00000582653 RBM4Q9BWF3 364 aaKnown RBP17.24■□□□□ 0.35
SHMT1-209ENST00000582653 HDHD2Q9H0R4 259 aa17.24■□□□□ 0.35
SHMT1-209ENST00000582653 ATPIF1Q9UII2 106 aa17.24■□□□□ 0.35
SHMT1-209ENST00000582653 PPP1R3CQ9UQK1 317 aa17.24■□□□□ 0.35
SHMT1-209ENST00000582653 POLR3KQ9Y2Y1 108 aaPredicted RBP17.24■□□□□ 0.35
SHMT1-209ENST00000582653 DYSFO75923 2080 aa17.24■□□□□ 0.35
SHMT1-209ENST00000582653 H0YL77 283 aa17.23■□□□□ 0.35
SHMT1-209ENST00000582653 FSHBP01225 129 aa17.23■□□□□ 0.35
SHMT1-209ENST00000582653 HLA-DQA2P01906 255 aa17.23■□□□□ 0.35
SHMT1-209ENST00000582653 ATP6V1B2P21281 511 aa17.23■□□□□ 0.35
SHMT1-209ENST00000582653 ACTG1P63261 375 aa17.23■□□□□ 0.35
SHMT1-209ENST00000582653 TMEM155Q4W5P6 130 aa17.23■□□□□ 0.35
SHMT1-209ENST00000582653 KLHL36Q8N4N3 616 aa17.23■□□□□ 0.35
SHMT1-209ENST00000582653 OR8G5Q8NG78 346 aa17.23■□□□□ 0.35
SHMT1-209ENST00000582653 OR10AD1Q8NGE0 317 aa17.23■□□□□ 0.35
SHMT1-209ENST00000582653 OR9Q2Q8NGE9 314 aa17.23■□□□□ 0.35
SHMT1-209ENST00000582653 SIGLEC11Q96RL6 698 aa17.23■□□□□ 0.35
SHMT1-209ENST00000582653 PITX2Q99697 317 aa17.23■□□□□ 0.35
SHMT1-209ENST00000582653 CDADC1Q9BWV3 514 aa17.23■□□□□ 0.35
SHMT1-209ENST00000582653 PATZ1Q9HBE1 687 aaKnown RBP17.23■□□□□ 0.35
SHMT1-209ENST00000582653 IGHV3-64DA0A0J9YX35 117 aa17.22■□□□□ 0.35
SHMT1-209ENST00000582653 F5H5K5 113 aa17.22■□□□□ 0.35
SHMT1-209ENST00000582653 J3QW42 95 aa17.22■□□□□ 0.35
SHMT1-209ENST00000582653 SURF4O15260 269 aa17.22■□□□□ 0.35
SHMT1-209ENST00000582653 IDH3BO43837 385 aa17.22■□□□□ 0.35
SHMT1-209ENST00000582653 SLC6A9P48067 706 aa17.22■□□□□ 0.35
SHMT1-209ENST00000582653 SEC61A1P61619 476 aaKnown RBP17.22■□□□□ 0.35
SHMT1-209ENST00000582653 KHDRBS1Q07666 443 aaKnown RBP eCLIP17.22■□□□□ 0.35
SHMT1-209ENST00000582653 PPP1R8Q12972 351 aaKnown RBP17.22■□□□□ 0.35
SHMT1-209ENST00000582653 ZMYND11Q15326 602 aa17.22■□□□□ 0.35
SHMT1-209ENST00000582653 BPIFB2Q8N4F0 458 aa17.22■□□□□ 0.35
SHMT1-209ENST00000582653 SPICQ8N5J4 248 aa17.22■□□□□ 0.35
SHMT1-209ENST00000582653 BHLHE23Q8NDY6 225 aa17.22■□□□□ 0.35
SHMT1-209ENST00000582653 OR2AJ1Q8NGZ0 328 aa17.22■□□□□ 0.35
SHMT1-209ENST00000582653 ZNF420Q8TAQ5 688 aaPredicted RBP17.22■□□□□ 0.35
SHMT1-209ENST00000582653 ZNRF4Q8WWF5 429 aa17.22■□□□□ 0.35
SHMT1-209ENST00000582653 ZNF582Q96NG8 517 aaPredicted RBP17.22■□□□□ 0.35
SHMT1-209ENST00000582653 SLC6A7Q99884 636 aa17.22■□□□□ 0.35
SHMT1-209ENST00000582653 BTBD10Q9BSF8 475 aa17.22■□□□□ 0.35
SHMT1-209ENST00000582653 NTN4Q9HB63 628 aa17.22■□□□□ 0.35
SHMT1-209ENST00000582653 GCM1Q9NP62 436 aa17.22■□□□□ 0.35
SHMT1-209ENST00000582653 MMP26Q9NRE1 261 aa17.22■□□□□ 0.35
SHMT1-209ENST00000582653 MRPL22Q9NWU5 206 aaKnown RBP17.22■□□□□ 0.35
SHMT1-209ENST00000582653 NDE1Q9NXR1 346 aa17.22■□□□□ 0.35
SHMT1-209ENST00000582653 LYVE1Q9Y5Y7 322 aa17.22■□□□□ 0.35
SHMT1-209ENST00000582653 ARHGAP32A7KAX9 2087 aa17.22■□□□□ 0.35
SHMT1-209ENST00000582653 B2RBV5 119 aa17.21■□□□□ 0.35
SHMT1-209ENST00000582653 TNFRSF11BO00300 401 aa17.21■□□□□ 0.35
SHMT1-209ENST00000582653 GASTP01350 101 aa17.21■□□□□ 0.35
SHMT1-209ENST00000582653 ACSM4P0C7M7 580 aa17.21■□□□□ 0.35
SHMT1-209ENST00000582653 PYCR1P32322 319 aa17.21■□□□□ 0.35
SHMT1-209ENST00000582653 GGT2P36268 569 aa17.21■□□□□ 0.35
SHMT1-209ENST00000582653 RPS27P42677 84 aaKnown RBP17.21■□□□□ 0.35
SHMT1-209ENST00000582653 HMGA2P52926 109 aa17.21■□□□□ 0.35
SHMT1-209ENST00000582653 BTG1P62324 171 aa17.21■□□□□ 0.35
SHMT1-209ENST00000582653 KRTAP27-1Q3LI81 207 aa17.21■□□□□ 0.35
SHMT1-209ENST00000582653 SLC36A3Q495N2 470 aa17.21■□□□□ 0.35
SHMT1-209ENST00000582653 SLC27A4Q6P1M0 643 aa17.21■□□□□ 0.35
SHMT1-209ENST00000582653 COLCA1Q6ZS62 124 aa17.21■□□□□ 0.35
SHMT1-209ENST00000582653 FITM2Q8N6M3 262 aa17.21■□□□□ 0.35
SHMT1-209ENST00000582653 CYB561A3Q8NBI2 242 aa17.21■□□□□ 0.35
SHMT1-209ENST00000582653 OR13G1Q8NGZ3 307 aa17.21■□□□□ 0.35
SHMT1-209ENST00000582653 DVL3Q92997 716 aaPredicted RBP17.21■□□□□ 0.35
SHMT1-209ENST00000582653 PLA2G12AQ9BZM1 189 aa17.21■□□□□ 0.35
SHMT1-209ENST00000582653 PNRC2Q9NPJ4 139 aaKnown RBP17.21■□□□□ 0.35
SHMT1-209ENST00000582653 ACTR3BQ9P1U1 418 aa17.21■□□□□ 0.35
SHMT1-209ENST00000582653 CYB5R1Q9UHQ9 305 aa17.21■□□□□ 0.35
SHMT1-209ENST00000582653 TRAPPC2LH3BP13 241 aa17.2■□□□□ 0.34
SHMT1-209ENST00000582653 TMEM178BH3BS89 294 aa17.2■□□□□ 0.34
SHMT1-209ENST00000582653 MLNRO43193 412 aa17.2■□□□□ 0.34
SHMT1-209ENST00000582653 KRT36O76013 467 aa17.2■□□□□ 0.34
SHMT1-209ENST00000582653 ZNF205O95201 554 aa17.2■□□□□ 0.34
SHMT1-209ENST00000582653 MMP16P51512 607 aa17.2■□□□□ 0.34
SHMT1-209ENST00000582653 SPATS1Q496A3 300 aa17.2■□□□□ 0.34
SHMT1-209ENST00000582653 C3orf56Q8N813 242 aa17.2■□□□□ 0.34
SHMT1-209ENST00000582653 ZDHHC22Q8N966 263 aa17.2■□□□□ 0.34
SHMT1-209ENST00000582653 DEFB108BQ8NET1 73 aa17.2■□□□□ 0.34
SHMT1-209ENST00000582653 OR4C15Q8NGM1 316 aa17.2■□□□□ 0.34
SHMT1-209ENST00000582653 OR8D4Q8NGM9 314 aa17.2■□□□□ 0.34
SHMT1-209ENST00000582653 POP5Q969H6 163 aaKnown RBP17.2■□□□□ 0.34
SHMT1-209ENST00000582653 MAP6Q96JE9 813 aa17.2■□□□□ 0.34
SHMT1-209ENST00000582653 MEGF10Q96KG7 1140 aa17.2■□□□□ 0.34
SHMT1-209ENST00000582653 DDOQ99489 341 aa17.2■□□□□ 0.34
SHMT1-209ENST00000582653 ATF6BQ99941 703 aa17.2■□□□□ 0.34
SHMT1-209ENST00000582653 SLC30A2Q9BRI3 323 aa17.2■□□□□ 0.34
SHMT1-209ENST00000582653 C1QTNF5Q9BXJ0 243 aa17.2■□□□□ 0.34
SHMT1-209ENST00000582653 CDH10Q9Y6N8 788 aa17.2■□□□□ 0.34
SHMT1-209ENST00000582653 TENM1Q9UKZ4 2725 aa17.2■□□□□ 0.34
SHMT1-209ENST00000582653 TCRBV5S2A0A599 114 aa17.19■□□□□ 0.34
SHMT1-209ENST00000582653 TVP23AA6NH52 213 aa17.19■□□□□ 0.34
SHMT1-209ENST00000582653 IQCF6A8MYZ5 107 aa17.19■□□□□ 0.34
SHMT1-209ENST00000582653 F5H5P2 479 aa17.19■□□□□ 0.34
SHMT1-209ENST00000582653 BHLHE40O14503 412 aa17.19■□□□□ 0.34
SHMT1-209ENST00000582653 CYB5R3P00387 301 aaPredicted RBP17.19■□□□□ 0.34
SHMT1-209ENST00000582653 HLA-DPB1P04440 258 aa17.19■□□□□ 0.34
SHMT1-209ENST00000582653 TRAP1Q12931 704 aaKnown RBP17.19■□□□□ 0.34
SHMT1-209ENST00000582653 TUSC1Q2TAM9 212 aa17.19■□□□□ 0.34
SHMT1-209ENST00000582653 ZNF362Q5T0B9 420 aaPredicted RBP17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms