RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 TEX30Q5JUR7 227 aa17.12■□□□□ 0.33
SS18-218ENST00000581021 KDM4DQ6B0I6 523 aa17.12■□□□□ 0.33
SS18-218ENST00000581021 CPOQ8IVL8 374 aa17.12■□□□□ 0.33
SS18-218ENST00000581021 TIGD4Q8IY51 512 aa17.12■□□□□ 0.33
SS18-218ENST00000581021 DNAJC9Q8WXX5 260 aa17.12■□□□□ 0.33
SS18-218ENST00000581021 ZMYND19Q96E35 227 aaPredicted RBP17.12■□□□□ 0.33
SS18-218ENST00000581021 AMELYQ99218 206 aa17.12■□□□□ 0.33
SS18-218ENST00000581021 C1QTNF5Q9BXJ0 243 aa17.12■□□□□ 0.33
SS18-218ENST00000581021 OR51V1Q9H2C8 321 aa17.12■□□□□ 0.33
SS18-218ENST00000581021 MARCH7Q9H992 704 aa17.12■□□□□ 0.33
SS18-218ENST00000581021 ZKSCAN7Q9P0L1 754 aaPredicted RBP17.12■□□□□ 0.33
SS18-218ENST00000581021 PURGQ9UJV8 347 aaKnown RBP17.12■□□□□ 0.33
SS18-218ENST00000581021 OAZ3Q9UMX2 235 aa17.12■□□□□ 0.33
SS18-218ENST00000581021 CACNG2Q9Y698 323 aa17.12■□□□□ 0.33
SS18-218ENST00000581021 YLPM1P49750 1951 aaKnown RBP17.11■□□□□ 0.33
SS18-218ENST00000581021 GLCEO94923 617 aa17.11■□□□□ 0.33
SS18-218ENST00000581021 FCGR1AP12314 374 aa17.11■□□□□ 0.33
SS18-218ENST00000581021 KITLGP21583 273 aa17.11■□□□□ 0.33
SS18-218ENST00000581021 SLC2A5P22732 501 aa17.11■□□□□ 0.33
SS18-218ENST00000581021 OTX1P32242 354 aaPredicted RBP17.11■□□□□ 0.33
SS18-218ENST00000581021 RBMXP38159 391 aaKnown RBP17.11■□□□□ 0.33
SS18-218ENST00000581021 RIPPLY3P57055 190 aa17.11■□□□□ 0.33
SS18-218ENST00000581021 ECH1Q13011 328 aa17.11■□□□□ 0.33
SS18-218ENST00000581021 TSTQ16762 297 aaKnown RBP17.11■□□□□ 0.33
SS18-218ENST00000581021 APOBEC3DQ96AK3 386 aaPredicted RBP17.11■□□□□ 0.33
SS18-218ENST00000581021 HAVCR1Q96D42 359 aa17.11■□□□□ 0.33
SS18-218ENST00000581021 PKP2Q99959 881 aa17.11■□□□□ 0.33
SS18-218ENST00000581021 SOX7Q9BT81 388 aa17.11■□□□□ 0.33
SS18-218ENST00000581021 KRT84Q9NSB2 600 aa17.11■□□□□ 0.33
SS18-218ENST00000581021 NKIRAS2Q9NYR9 191 aa17.11■□□□□ 0.33
SS18-218ENST00000581021 GPR160Q9UJ42 338 aa17.11■□□□□ 0.33
SS18-218ENST00000581021 LRP5LA4QPB2 252 aa17.1■□□□□ 0.33
SS18-218ENST00000581021 SAC3D1A6NKF1 404 aa17.1■□□□□ 0.33
SS18-218ENST00000581021 INAFM1C9JVW0 142 aa17.1■□□□□ 0.33
SS18-218ENST00000581021 PRR23D1E9PI22 279 aaPredicted RBP17.1■□□□□ 0.33
SS18-218ENST00000581021 J3QW42 95 aa17.1■□□□□ 0.33
SS18-218ENST00000581021 TIMM8AO60220 97 aaPredicted RBP17.1■□□□□ 0.33
SS18-218ENST00000581021 SELENOFO60613 162 aa17.1■□□□□ 0.33
SS18-218ENST00000581021 CDC14BO60729 498 aa17.1■□□□□ 0.33
SS18-218ENST00000581021 LILRA1O75019 489 aa17.1■□□□□ 0.33
SS18-218ENST00000581021 HMGN1P05114 100 aa17.1■□□□□ 0.33
SS18-218ENST00000581021 PRR23D2P0DMB1 279 aaPredicted RBP17.1■□□□□ 0.33
SS18-218ENST00000581021 IGHV4-31P0DP07 118 aa17.1■□□□□ 0.33
SS18-218ENST00000581021 GSTT1P30711 240 aa17.1■□□□□ 0.33
SS18-218ENST00000581021 IL2RGP31785 369 aa17.1■□□□□ 0.33
SS18-218ENST00000581021 RGS6P49758 472 aa17.1■□□□□ 0.33
SS18-218ENST00000581021 PTGES3Q15185 160 aaKnown RBP17.1■□□□□ 0.33
SS18-218ENST00000581021 PCGF3Q3KNV8 242 aa17.1■□□□□ 0.33
SS18-218ENST00000581021 FBXW12Q6X9E4 464 aa17.1■□□□□ 0.33
SS18-218ENST00000581021 SPATC1Q76KD6 591 aa17.1■□□□□ 0.33
SS18-218ENST00000581021 DPY19L4Q7Z388 723 aa17.1■□□□□ 0.33
SS18-218ENST00000581021 ZDHHC13Q8IUH4 622 aa17.1■□□□□ 0.33
SS18-218ENST00000581021 ERI1Q8IV48 349 aaKnown RBP17.1■□□□□ 0.33
SS18-218ENST00000581021 RDH5Q92781 318 aa17.1■□□□□ 0.33
SS18-218ENST00000581021 SLAMF6Q96DU3 332 aa17.1■□□□□ 0.33
SS18-218ENST00000581021 CENPNQ96H22 339 aaPredicted RBP17.1■□□□□ 0.33
SS18-218ENST00000581021 CIB1Q99828 191 aa17.1■□□□□ 0.33
SS18-218ENST00000581021 ZNF275Q9NSD4 429 aaPredicted RBP17.1■□□□□ 0.33
SS18-218ENST00000581021 TVP23BQ9NYZ1 205 aa17.1■□□□□ 0.33
SS18-218ENST00000581021 KLHDC2Q9Y2U9 406 aa17.1■□□□□ 0.33
SS18-218ENST00000581021 M0R135 149 aa17.09■□□□□ 0.33
SS18-218ENST00000581021 WNT9BO14905 357 aa17.09■□□□□ 0.33
SS18-218ENST00000581021 CD5LO43866 347 aa17.09■□□□□ 0.33
SS18-218ENST00000581021 PRKYO43930 277 aa17.09■□□□□ 0.33
SS18-218ENST00000581021 ADH4P08319 380 aa17.09■□□□□ 0.33
SS18-218ENST00000581021 PAICSP22234 425 aaKnown RBP17.09■□□□□ 0.33
SS18-218ENST00000581021 ACHEP22303 614 aa17.09■□□□□ 0.33
SS18-218ENST00000581021 TUBG1P23258 451 aa17.09■□□□□ 0.33
SS18-218ENST00000581021 POLR2IP36954 125 aaKnown RBP17.09■□□□□ 0.33
SS18-218ENST00000581021 MRPS11P82912 194 aaKnown RBP17.09■□□□□ 0.33
SS18-218ENST00000581021 PPP2R2BQ00005 443 aa17.09■□□□□ 0.33
SS18-218ENST00000581021 MOGQ16653 247 aa17.09■□□□□ 0.33
SS18-218ENST00000581021 SNAI3Q3KNW1 292 aa17.09■□□□□ 0.33
SS18-218ENST00000581021 OR6N2Q8NGY6 317 aa17.09■□□□□ 0.33
SS18-218ENST00000581021 ZNF799Q96GE5 643 aa17.09■□□□□ 0.33
SS18-218ENST00000581021 INTS14Q96SY0 518 aa17.09■□□□□ 0.33
SS18-218ENST00000581021 CHODLQ9H9P2 273 aa17.09■□□□□ 0.33
SS18-218ENST00000581021 TUBG2Q9NRH3 451 aa17.09■□□□□ 0.33
SS18-218ENST00000581021 PLSCR5A0PG75 271 aa17.08■□□□□ 0.32
SS18-218ENST00000581021 CCDC182A6NF36 153 aa17.08■□□□□ 0.32
SS18-218ENST00000581021 ZAR1LA6NP61 321 aa17.08■□□□□ 0.32
SS18-218ENST00000581021 TACSTD2P09758 323 aa17.08■□□□□ 0.32
SS18-218ENST00000581021 RAC2P15153 192 aa17.08■□□□□ 0.32
SS18-218ENST00000581021 BLVRAP53004 296 aa17.08■□□□□ 0.32
SS18-218ENST00000581021 ESRRGP62508 458 aa17.08■□□□□ 0.32
SS18-218ENST00000581021 CDK5R2Q13319 367 aa17.08■□□□□ 0.32
SS18-218ENST00000581021 SNAPC1Q16533 368 aa17.08■□□□□ 0.32
SS18-218ENST00000581021 KLHL12Q53G59 568 aa17.08■□□□□ 0.32
SS18-218ENST00000581021 SLX4IPQ5VYV7 408 aa17.08■□□□□ 0.32
SS18-218ENST00000581021 OR2T2Q6IF00 324 aa17.08■□□□□ 0.32
SS18-218ENST00000581021 USP51Q70EK9 711 aa17.08■□□□□ 0.32
SS18-218ENST00000581021 CXXC5Q7LFL8 322 aaKnown RBP17.08■□□□□ 0.32
SS18-218ENST00000581021 BCDIN3DQ7Z5W3 292 aaKnown RBP17.08■□□□□ 0.32
SS18-218ENST00000581021 OR5AS1Q8N127 324 aa17.08■□□□□ 0.32
SS18-218ENST00000581021 POM121Q96HA1 1249 aa17.08■□□□□ 0.32
SS18-218ENST00000581021 COPS4Q9BT78 406 aa17.08■□□□□ 0.32
SS18-218ENST00000581021 ABHD6Q9BV23 337 aa17.08■□□□□ 0.32
SS18-218ENST00000581021 SVEP1Q4LDE5 3571 aa17.08■□□□□ 0.32
SS18-218ENST00000581021 PRODHO43272 600 aa17.07■□□□□ 0.32
SS18-218ENST00000581021 MT-ND5P03915 603 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms