RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 ANKRD12Q6UB98 2062 aa2.88□□□□□ -1.95
SS18-214ENST00000580003 NID2Q14112 1375 aa2.87□□□□□ -1.95
SS18-214ENST00000580003 C16orf90A8MZG2 172 aa2.87□□□□□ -1.95
SS18-214ENST00000580003 NDUFC2-KCTD14E9PQ53 114 aa2.87□□□□□ -1.95
SS18-214ENST00000580003 P0C880 135 aa2.87□□□□□ -1.95
SS18-214ENST00000580003 SLC1A1P43005 524 aa2.87□□□□□ -1.95
SS18-214ENST00000580003 KRTAP12-3P60328 96 aa2.87□□□□□ -1.95
SS18-214ENST00000580003 RBX1P62877 108 aa2.87□□□□□ -1.95
SS18-214ENST00000580003 C9orf135Q5VTT2 229 aa2.87□□□□□ -1.95
SS18-214ENST00000580003 CDR2LQ86X02 465 aaPredicted RBP2.87□□□□□ -1.95
SS18-214ENST00000580003 IQCKQ8N0W5 287 aa2.87□□□□□ -1.95
SS18-214ENST00000580003 CBR4Q8N4T8 237 aa2.87□□□□□ -1.95
SS18-214ENST00000580003 OR56B2PQ8NGI1 322 aa2.87□□□□□ -1.95
SS18-214ENST00000580003 OR52E2Q8NGJ4 325 aa2.87□□□□□ -1.95
SS18-214ENST00000580003 RAB3IL1Q8TBN0 382 aa2.87□□□□□ -1.95
SS18-214ENST00000580003 APH1BQ8WW43 257 aa2.87□□□□□ -1.95
SS18-214ENST00000580003 TMEM27Q9HBJ8 222 aa2.87□□□□□ -1.95
SS18-214ENST00000580003 DENND4AQ7Z401 1863 aa2.86□□□□□ -1.95
SS18-214ENST00000580003 IGHV3-49A0A0A0MS15 119 aa2.86□□□□□ -1.95
SS18-214ENST00000580003 OR5H1A6NKK0 313 aa2.86□□□□□ -1.95
SS18-214ENST00000580003 CLOCKO15516 846 aa2.86□□□□□ -1.95
SS18-214ENST00000580003 GLSO94925 669 aaPredicted RBP2.86□□□□□ -1.95
SS18-214ENST00000580003 CT45A6P0DMU7 189 aa2.86□□□□□ -1.95
SS18-214ENST00000580003 CT45A5P0DMU8 189 aa2.86□□□□□ -1.95
SS18-214ENST00000580003 CT45A7P0DMV0 189 aa2.86□□□□□ -1.95
SS18-214ENST00000580003 ATP5IP56385 69 aaPredicted RBP2.86□□□□□ -1.95
SS18-214ENST00000580003 EIF3EP60228 445 aaKnown RBP2.86□□□□□ -1.95
SS18-214ENST00000580003 ACTR3P61158 418 aa2.86□□□□□ -1.95
SS18-214ENST00000580003 SP4Q02446 784 aa2.86□□□□□ -1.95
SS18-214ENST00000580003 PRKCDQ05655 676 aa2.86□□□□□ -1.95
SS18-214ENST00000580003 SRSF5Q13243 272 aaKnown RBP2.86□□□□□ -1.95
SS18-214ENST00000580003 PGGHGQ32M88 737 aa2.86□□□□□ -1.95
SS18-214ENST00000580003 CT45A1Q5HYN5 189 aa2.86□□□□□ -1.95
SS18-214ENST00000580003 SLC8B1Q6J4K2 584 aa2.86□□□□□ -1.95
SS18-214ENST00000580003 NPSR1Q6W5P4 371 aa2.86□□□□□ -1.95
SS18-214ENST00000580003 C11orf72Q8NBR9 251 aa2.86□□□□□ -1.95
SS18-214ENST00000580003 ZNF680Q8NEM1 530 aa2.86□□□□□ -1.95
SS18-214ENST00000580003 OR10G6Q8NH81 332 aa2.86□□□□□ -1.95
SS18-214ENST00000580003 CT45A3Q8NHU0 189 aa2.86□□□□□ -1.95
SS18-214ENST00000580003 KLF14Q8TD94 323 aaPredicted RBP2.86□□□□□ -1.95
SS18-214ENST00000580003 SLC2A14Q8TDB8 520 aa2.86□□□□□ -1.95
SS18-214ENST00000580003 CDX2Q99626 313 aaPredicted RBP2.86□□□□□ -1.95
SS18-214ENST00000580003 PLA2G12AQ9BZM1 189 aa2.86□□□□□ -1.95
SS18-214ENST00000580003 MED4Q9NPJ6 270 aa2.86□□□□□ -1.95
SS18-214ENST00000580003 SHANK1Q9Y566 2161 aa2.85□□□□□ -1.95
SS18-214ENST00000580003 IGHV3-72A0A0B4J1Y9 119 aa2.85□□□□□ -1.95
SS18-214ENST00000580003 IGKV1-8A0A0C4DH67 115 aa2.85□□□□□ -1.95
SS18-214ENST00000580003 SMCO3A2RU48 225 aa2.85□□□□□ -1.95
SS18-214ENST00000580003 H0Y8G0 127 aa2.85□□□□□ -1.95
SS18-214ENST00000580003 RRM2P31350 389 aa2.85□□□□□ -1.95
SS18-214ENST00000580003 TALDO1P37837 337 aa2.85□□□□□ -1.95
SS18-214ENST00000580003 SULT1E1P49888 294 aa2.85□□□□□ -1.95
SS18-214ENST00000580003 PPIDQ08752 370 aaKnown RBP2.85□□□□□ -1.95
SS18-214ENST00000580003 PSMD5Q16401 504 aa2.85□□□□□ -1.95
SS18-214ENST00000580003 SOHLH1Q5JUK2 328 aa2.85□□□□□ -1.95
SS18-214ENST00000580003 ARL6IP6Q8N6S5 226 aa2.85□□□□□ -1.95
SS18-214ENST00000580003 OR5T1Q8NG75 326 aa2.85□□□□□ -1.95
SS18-214ENST00000580003 ECHDC3Q96DC8 303 aa2.85□□□□□ -1.95
SS18-214ENST00000580003 WDR34Q96EX3 536 aa2.85□□□□□ -1.95
SS18-214ENST00000580003 RHOXF2Q9BQY4 288 aa2.85□□□□□ -1.95
SS18-214ENST00000580003 CHCHD7Q9BUK0 85 aa2.85□□□□□ -1.95
SS18-214ENST00000580003 ZSCAN16Q9H4T2 348 aaPredicted RBP2.85□□□□□ -1.95
SS18-214ENST00000580003 CCDC59Q9P031 241 aaKnown RBP2.85□□□□□ -1.95
SS18-214ENST00000580003 ZNF230Q9UIE0 474 aaPredicted RBP2.85□□□□□ -1.95
SS18-214ENST00000580003 IGHV1-3A0A0C4DH29 117 aa2.84□□□□□ -1.95
SS18-214ENST00000580003 A0A0J9YXV3 536 aa2.84□□□□□ -1.95
SS18-214ENST00000580003 RAD51CO43502 376 aa2.84□□□□□ -1.95
SS18-214ENST00000580003 TROVE2P10155 538 aaKnown RBP eCLIP2.84□□□□□ -1.95
SS18-214ENST00000580003 RBMY1FQ15415 496 aaKnown RBP2.84□□□□□ -1.95
SS18-214ENST00000580003 CMC1Q7Z7K0 106 aa2.84□□□□□ -1.95
SS18-214ENST00000580003 FAM71AQ8IYT1 594 aa2.84□□□□□ -1.95
SS18-214ENST00000580003 CMTM1Q8IZ96 169 aa2.84□□□□□ -1.95
SS18-214ENST00000580003 ZNF101Q8IZC7 436 aa2.84□□□□□ -1.95
SS18-214ENST00000580003 SLC35G3Q8N808 338 aa2.84□□□□□ -1.95
SS18-214ENST00000580003 OR7G2Q8NG99 324 aa2.84□□□□□ -1.95
SS18-214ENST00000580003 ANKRD60Q9BZ19 345 aa2.84□□□□□ -1.95
SS18-214ENST00000580003 DHX35Q9H5Z1 703 aaKnown RBP2.84□□□□□ -1.95
SS18-214ENST00000580003 MYOZ1Q9NP98 299 aaPredicted RBP2.84□□□□□ -1.95
SS18-214ENST00000580003 IGHV1-69DA0A0B4J2H0 117 aa2.83□□□□□ -1.96
SS18-214ENST00000580003 HEATR9A2RTY3 570 aa2.83□□□□□ -1.96
SS18-214ENST00000580003 SIRPB1O00241 398 aa2.83□□□□□ -1.96
SS18-214ENST00000580003 PLIN3O60664 434 aa2.83□□□□□ -1.96
SS18-214ENST00000580003 KRTAP5-8O75690 187 aa2.83□□□□□ -1.96
SS18-214ENST00000580003 OR2J3O76001 311 aa2.83□□□□□ -1.96
SS18-214ENST00000580003 SERPINE2P07093 398 aa2.83□□□□□ -1.96
SS18-214ENST00000580003 CYP24A1Q07973 514 aa2.83□□□□□ -1.96
SS18-214ENST00000580003 DGCR6Q14129 220 aa2.83□□□□□ -1.96
SS18-214ENST00000580003 ZNF266Q14584 549 aa2.83□□□□□ -1.96
SS18-214ENST00000580003 REEP3Q6NUK4 255 aa2.83□□□□□ -1.96
SS18-214ENST00000580003 GUSBP11Q6P575 273 aa2.83□□□□□ -1.96
SS18-214ENST00000580003 MBOAT2Q6ZWT7 520 aa2.83□□□□□ -1.96
SS18-214ENST00000580003 OR6Q1Q8NGQ2 317 aa2.83□□□□□ -1.96
SS18-214ENST00000580003 OR1J4Q8NGS1 313 aa2.83□□□□□ -1.96
SS18-214ENST00000580003 ZNF317Q96PQ6 595 aaPredicted RBP2.83□□□□□ -1.96
SS18-214ENST00000580003 SHANK2-AS3Q9BTD1 123 aa2.83□□□□□ -1.96
SS18-214ENST00000580003 C1orf50Q9BV19 199 aa2.83□□□□□ -1.96
SS18-214ENST00000580003 ANGPTL4Q9BY76 406 aa2.83□□□□□ -1.96
SS18-214ENST00000580003 ASB3Q9Y575 518 aa2.83□□□□□ -1.96
SS18-214ENST00000580003 SYCE1LA8MT33 242 aa2.82□□□□□ -1.96
SS18-214ENST00000580003 MANBAO00462 879 aa2.82□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms