RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 CDK5R1Q15078 307 aa9.34□□□□□ -0.91
SS18-213ENST00000579640 TAB1Q15750 504 aa9.34□□□□□ -0.91
SS18-213ENST00000579640 ZNF799Q96GE5 643 aa9.34□□□□□ -0.91
SS18-213ENST00000579640 ST6GALNAC2Q9UJ37 374 aa9.34□□□□□ -0.91
SS18-213ENST00000579640 NKX2-6A6NCS4 301 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 E9PI62 339 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 F5H5K5 113 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 LOC110117498-PIK3R3F6TDL0 507 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 CCRL2O00421 344 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 PLPP2O43688 288 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 IGLV1-44P01699 117 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 APEX1P27695 318 aaKnown RBP9.33□□□□□ -0.92
SS18-213ENST00000579640 PSMB10P40306 273 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 PEX19P40855 299 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 IDH3GP51553 393 aaPredicted RBP9.33□□□□□ -0.92
SS18-213ENST00000579640 PRKXP51817 358 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 GALK2Q01415 458 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 TSTQ16762 297 aaKnown RBP9.33□□□□□ -0.92
SS18-213ENST00000579640 TBC1D28Q2M2D7 210 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 DMKNQ6E0U4 476 aaPredicted RBP9.33□□□□□ -0.92
SS18-213ENST00000579640 GPR141Q7Z602 305 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 CATSPERDQ86XM0 798 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 ZNF584Q8IVC4 421 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 SLC30A7Q8NEW0 376 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 IL17RDQ8NFM7 739 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 OR13F1Q8NGS4 319 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 OR2G2Q8NGZ5 317 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 RPS4Y2Q8TD47 263 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 RNF166Q96A37 237 aaPredicted RBP9.33□□□□□ -0.92
SS18-213ENST00000579640 SMIM19Q96E16 107 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 POM121L2Q96KW2 1035 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 C4orf45Q96LM5 186 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 FAM206AQ9NX38 181 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 OR52A1Q9UKL2 312 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 GRIP1Q9Y3R0 1128 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 DIDO1Q9BTC0 2240 aaKnown RBP9.33□□□□□ -0.92
SS18-213ENST00000579640 TRBV2A0A0J9YWF9 115 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 TMEM212A6NML5 194 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 GPRIN2O60269 458 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 AGFG2O95081 481 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 PNPP00491 289 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 ACSM4P0C7M7 580 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 CELP19835 753 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 SLC6A9P48067 706 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 RGS6P49758 472 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 GTF2A1P52655 376 aaPredicted RBP9.33□□□□□ -0.92
SS18-213ENST00000579640 ZNF121P58317 390 aaPredicted RBP9.33□□□□□ -0.92
SS18-213ENST00000579640 TFF3Q07654 80 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 DOC2BQ14184 412 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 TRAM1Q15629 374 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 RSPO1Q2MKA7 263 aaPredicted RBP9.33□□□□□ -0.92
SS18-213ENST00000579640 BCL2L15Q5TBC7 163 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 ARL9Q6T311 187 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 OR52H1Q8NGJ2 320 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 COMMD4Q9H0A8 199 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 CDH20Q9HBT6 801 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 NGBQ9NPG2 151 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 G6PC2Q9NQR9 355 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 NDRG3Q9UGV2 375 aa9.33□□□□□ -0.92
SS18-213ENST00000579640 NUFIP1Q9UHK0 495 aaKnown RBP9.33□□□□□ -0.92
SS18-213ENST00000579640 LOC100509620A0A075B734 347 aa9.32□□□□□ -0.92
SS18-213ENST00000579640 C5orf49A4QMS7 147 aa9.32□□□□□ -0.92
SS18-213ENST00000579640 J3QW42 95 aa9.32□□□□□ -0.92
SS18-213ENST00000579640 ANXA2P07355 339 aaKnown RBP9.32□□□□□ -0.92
SS18-213ENST00000579640 DBHP09172 617 aa9.32□□□□□ -0.92
SS18-213ENST00000579640 PSMA1P25786 263 aaKnown RBP9.32□□□□□ -0.92
SS18-213ENST00000579640 LIPAP38571 399 aa9.32□□□□□ -0.92
SS18-213ENST00000579640 NANOS3P60323 173 aaKnown RBP9.32□□□□□ -0.92
SS18-213ENST00000579640 MFGE8Q08431 387 aaPredicted RBP9.32□□□□□ -0.92
SS18-213ENST00000579640 CDSNQ15517 529 aa9.32□□□□□ -0.92
SS18-213ENST00000579640 WDR38Q5JTN6 314 aa9.32□□□□□ -0.92
SS18-213ENST00000579640 LIPKQ5VXJ0 399 aa9.32□□□□□ -0.92
SS18-213ENST00000579640 ZNF704Q6ZNC4 412 aaPredicted RBP9.32□□□□□ -0.92
SS18-213ENST00000579640 PHC2Q8IXK0 858 aa9.32□□□□□ -0.92
SS18-213ENST00000579640 ELMOD2Q8IZ81 293 aa9.32□□□□□ -0.92
SS18-213ENST00000579640 MS4A15Q8N5U1 240 aa9.32□□□□□ -0.92
SS18-213ENST00000579640 ZFP41Q8N8Y5 198 aa9.32□□□□□ -0.92
SS18-213ENST00000579640 SLC7A6Q92536 515 aa9.32□□□□□ -0.92
SS18-213ENST00000579640 PGAM5Q96HS1 289 aa9.32□□□□□ -0.92
SS18-213ENST00000579640 MED18Q9BUE0 208 aa9.32□□□□□ -0.92
SS18-213ENST00000579640 PBOV1Q9GZY1 135 aa9.32□□□□□ -0.92
SS18-213ENST00000579640 NDUFB11Q9NX14 153 aa9.32□□□□□ -0.92
SS18-213ENST00000579640 FRRS1LQ9P0K9 344 aa9.32□□□□□ -0.92
SS18-213ENST00000579640 GTF2A1LQ9UNN4 478 aa9.32□□□□□ -0.92
SS18-213ENST00000579640 SIRT4Q9Y6E7 314 aaPredicted RBP9.32□□□□□ -0.92
SS18-213ENST00000579640 IGHV1-18A0A0C4DH31 117 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 OR4C45A6NMZ5 311 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 ICMTO60725 284 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 CECR9P0C854 216 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 UBCP0CG48 685 aaKnown RBP9.31□□□□□ -0.92
SS18-213ENST00000579640 GABRA5P31644 462 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 SSX1Q16384 188 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 UNQ6126/PRO20091Q6UXV3 157 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 COLCA1Q6ZS62 124 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 PRSS45Q7RTY3 260 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 PRSS35Q8N3Z0 413 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 OR5AK2Q8NH90 309 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 APOBEC3DQ96AK3 386 aaPredicted RBP9.31□□□□□ -0.92
SS18-213ENST00000579640 TMIGD2Q96BF3 282 aa9.31□□□□□ -0.92
SS18-213ENST00000579640 YIPF6Q96EC8 236 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms