RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 NAPGQ99747 312 aaPredicted RBP4.66□□□□□ -1.66
VPS53-219ENST00000576019 TM2D1Q9BX74 207 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 TMEM59Q9BXS4 323 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 CXCL16Q9H2A7 254 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 LHX5Q9H2C1 402 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 OR52A5Q9H2C5 316 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 PIGUQ9H490 435 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 DDX31Q9H8H2 851 aaKnown RBP4.66□□□□□ -1.66
VPS53-219ENST00000576019 SP140LQ9H930 580 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 TXLNGQ9NUQ3 528 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 MLXQ9UH92 298 aa4.66□□□□□ -1.66
VPS53-219ENST00000576019 HRNRQ86YZ3 2850 aaPredicted RBP4.65□□□□□ -1.66
VPS53-219ENST00000576019 TRAV6A0A075B6T7 132 aa4.65□□□□□ -1.67
VPS53-219ENST00000576019 A0A087WW49 117 aa4.65□□□□□ -1.67
VPS53-219ENST00000576019 TRGV8A0A0C4DH27 118 aa4.65□□□□□ -1.67
VPS53-219ENST00000576019 SULT2B1O00204 365 aa4.65□□□□□ -1.67
VPS53-219ENST00000576019 RFXANKO14593 260 aa4.65□□□□□ -1.67
VPS53-219ENST00000576019 SLC9A3R1O14745 358 aaPredicted RBP4.65□□□□□ -1.67
VPS53-219ENST00000576019 BUB3O43684 328 aa4.65□□□□□ -1.67
VPS53-219ENST00000576019 GMDSO60547 372 aa4.65□□□□□ -1.67
VPS53-219ENST00000576019 SLC19A2O60779 497 aa4.65□□□□□ -1.67
VPS53-219ENST00000576019 KLHL2O95198 593 aa4.65□□□□□ -1.67
VPS53-219ENST00000576019 FGGP02679 453 aa4.65□□□□□ -1.67
VPS53-219ENST00000576019 CD55P08174 381 aa4.65□□□□□ -1.67
VPS53-219ENST00000576019 ATP6V0D1P61421 351 aa4.65□□□□□ -1.67
VPS53-219ENST00000576019 STX3Q13277 289 aa4.65□□□□□ -1.67
VPS53-219ENST00000576019 GNMTQ14749 295 aa4.65□□□□□ -1.67
VPS53-219ENST00000576019 MEDAGQ5VYS4 303 aa4.65□□□□□ -1.67
VPS53-219ENST00000576019 PRSS57Q6UWY2 283 aa4.65□□□□□ -1.67
VPS53-219ENST00000576019 C3P1Q6ZMU1 363 aa4.65□□□□□ -1.67
VPS53-219ENST00000576019 SLC26A9Q7LBE3 791 aa4.65□□□□□ -1.67
VPS53-219ENST00000576019 APRG1Q8IVJ8 170 aa4.65□□□□□ -1.67
VPS53-219ENST00000576019 NELFCDQ8IXH7 590 aa4.65□□□□□ -1.67
VPS53-219ENST00000576019 ADAMTS16Q8TE57 1224 aa4.65□□□□□ -1.67
VPS53-219ENST00000576019 STMN2Q93045 179 aa4.65□□□□□ -1.67
VPS53-219ENST00000576019 CPB2Q96IY4 423 aa4.65□□□□□ -1.67
VPS53-219ENST00000576019 FAM210AQ96ND0 272 aa4.65□□□□□ -1.67
VPS53-219ENST00000576019 MS4A4EQ96PG1 132 aa4.65□□□□□ -1.67
VPS53-219ENST00000576019 MEIS3Q99687 375 aa4.65□□□□□ -1.67
VPS53-219ENST00000576019 HSD17B14Q9BPX1 270 aa4.65□□□□□ -1.67
VPS53-219ENST00000576019 GBA3Q9H227 469 aa4.65□□□□□ -1.67
VPS53-219ENST00000576019 ZNF385DQ9H6B1 395 aa4.65□□□□□ -1.67
VPS53-219ENST00000576019 AGPAT4Q9NRZ5 378 aa4.65□□□□□ -1.67
VPS53-219ENST00000576019 MS4A12Q9NXJ0 267 aa4.65□□□□□ -1.67
VPS53-219ENST00000576019 EURLQ9NYK6 297 aa4.65□□□□□ -1.67
VPS53-219ENST00000576019 RPL36Q9Y3U8 105 aaKnown RBP4.65□□□□□ -1.67
VPS53-219ENST00000576019 CITO14578 2027 aa4.65□□□□□ -1.67
VPS53-219ENST00000576019 ANAPC1Q9H1A4 1944 aa4.64□□□□□ -1.67
VPS53-219ENST00000576019 K7EQG2 157 aa4.64□□□□□ -1.67
VPS53-219ENST00000576019 EIF4E2O60573 245 aaKnown RBP4.64□□□□□ -1.67
VPS53-219ENST00000576019 ERLIN2O94905 339 aa4.64□□□□□ -1.67
VPS53-219ENST00000576019 CD160O95971 181 aa4.64□□□□□ -1.67
VPS53-219ENST00000576019 CRYAAP02489 173 aa4.64□□□□□ -1.67
VPS53-219ENST00000576019 PVRP15151 417 aa4.64□□□□□ -1.67
VPS53-219ENST00000576019 NPR2P20594 1047 aa4.64□□□□□ -1.67
VPS53-219ENST00000576019 FASP25445 335 aa4.64□□□□□ -1.67
VPS53-219ENST00000576019 DDOSTP39656 456 aa4.64□□□□□ -1.67
VPS53-219ENST00000576019 ELK3P41970 407 aa4.64□□□□□ -1.67
VPS53-219ENST00000576019 GPR1P46091 355 aa4.64□□□□□ -1.67
VPS53-219ENST00000576019 IZUMO4Q1ZYL8 232 aa4.64□□□□□ -1.67
VPS53-219ENST00000576019 GPRC6AQ5T6X5 926 aa4.64□□□□□ -1.67
VPS53-219ENST00000576019 ZNF470Q6ECI4 717 aa4.64□□□□□ -1.67
VPS53-219ENST00000576019 CLEC6AQ6EIG7 209 aa4.64□□□□□ -1.67
VPS53-219ENST00000576019 SLC35E4Q6ICL7 350 aa4.64□□□□□ -1.67
VPS53-219ENST00000576019 FRRS1Q6ZNA5 592 aa4.64□□□□□ -1.67
VPS53-219ENST00000576019 FRA10AC1Q70Z53 315 aa4.64□□□□□ -1.67
VPS53-219ENST00000576019 RFLNBQ8N5W9 214 aa4.64□□□□□ -1.67
VPS53-219ENST00000576019 OR56B4Q8NH76 319 aa4.64□□□□□ -1.67
VPS53-219ENST00000576019 NEIL2Q969S2 332 aa4.64□□□□□ -1.67
VPS53-219ENST00000576019 ECHDC3Q96DC8 303 aa4.64□□□□□ -1.67
VPS53-219ENST00000576019 C9orf72Q96LT7 481 aa4.64□□□□□ -1.67
VPS53-219ENST00000576019 FOXN4Q96NZ1 517 aa4.64□□□□□ -1.67
VPS53-219ENST00000576019 CLEC7AQ9BXN2 247 aa4.64□□□□□ -1.67
VPS53-219ENST00000576019 KRTAP4-11Q9BYQ6 195 aa4.64□□□□□ -1.67
VPS53-219ENST00000576019 MOB1AQ9H8S9 216 aa4.64□□□□□ -1.67
VPS53-219ENST00000576019 DMAP1Q9NPF5 467 aaPredicted RBP4.64□□□□□ -1.67
VPS53-219ENST00000576019 EXOSC3Q9NQT5 275 aaKnown RBP4.64□□□□□ -1.67
VPS53-219ENST00000576019 UXTQ9UBK9 157 aaPredicted RBP4.64□□□□□ -1.67
VPS53-219ENST00000576019 RIMS3Q9UJD0 308 aa4.64□□□□□ -1.67
VPS53-219ENST00000576019 HERC1Q15751 4861 aa4.64□□□□□ -1.67
VPS53-219ENST00000576019 COL7A1Q02388 2944 aa4.64□□□□□ -1.67
VPS53-219ENST00000576019 UNC13CQ8NB66 2214 aa4.64□□□□□ -1.67
VPS53-219ENST00000576019 MYH10P35580 1976 aa4.64□□□□□ -1.67
VPS53-219ENST00000576019 LOC100131303A0A0U1RQF7 123 aa4.63□□□□□ -1.67
VPS53-219ENST00000576019 A0A1B0GW15 77 aa4.63□□□□□ -1.67
VPS53-219ENST00000576019 CENPXA8MT69 81 aa4.63□□□□□ -1.67
VPS53-219ENST00000576019 TFECO14948 347 aaPredicted RBP4.63□□□□□ -1.67
VPS53-219ENST00000576019 LCA5LO95447 670 aa4.63□□□□□ -1.67
VPS53-219ENST00000576019 CLIC3O95833 236 aa4.63□□□□□ -1.67
VPS53-219ENST00000576019 GLAP06280 429 aa4.63□□□□□ -1.67
VPS53-219ENST00000576019 RBMY1CP0DJD4 496 aa4.63□□□□□ -1.67
VPS53-219ENST00000576019 PRKACGP22612 351 aa4.63□□□□□ -1.67
VPS53-219ENST00000576019 IL12AP29459 219 aa4.63□□□□□ -1.67
VPS53-219ENST00000576019 YAP1P46937 504 aaKnown RBP4.63□□□□□ -1.67
VPS53-219ENST00000576019 KCNJ3P48549 501 aa4.63□□□□□ -1.67
VPS53-219ENST00000576019 TUFMP49411 452 aaKnown RBP4.63□□□□□ -1.67
VPS53-219ENST00000576019 PAX2Q02962 417 aa4.63□□□□□ -1.67
VPS53-219ENST00000576019 KRTAP1-1Q07627 177 aa4.63□□□□□ -1.67
VPS53-219ENST00000576019 PMS2P3Q13401 168 aa4.63□□□□□ -1.67
VPS53-219ENST00000576019 VAMP3Q15836 100 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms