RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 CRISP3P54108 245 aa12.9□□□□□ -0.34
VPS53-218ENST00000575207 RABL3Q5HYI8 236 aa12.9□□□□□ -0.34
VPS53-218ENST00000575207 FAM91A1Q658Y4 838 aa12.9□□□□□ -0.34
VPS53-218ENST00000575207 TIFABQ6ZNK6 161 aa12.9□□□□□ -0.34
VPS53-218ENST00000575207 C8orf86Q6ZUL3 223 aa12.9□□□□□ -0.34
VPS53-218ENST00000575207 PIGWQ7Z7B1 504 aa12.9□□□□□ -0.34
VPS53-218ENST00000575207 TMEM100Q9NV29 134 aa12.9□□□□□ -0.34
VPS53-218ENST00000575207 SELENONQ9NZV5 590 aa12.9□□□□□ -0.34
VPS53-218ENST00000575207 P2RX2Q9UBL9 471 aa12.9□□□□□ -0.34
VPS53-218ENST00000575207 EMCNQ9ULC0 261 aa12.9□□□□□ -0.34
VPS53-218ENST00000575207 PRPF19Q9UMS4 504 aaKnown RBP12.9□□□□□ -0.34
VPS53-218ENST00000575207 CAPN7Q9Y6W3 813 aa12.9□□□□□ -0.34
VPS53-218ENST00000575207 IQCF6A8MYZ5 107 aa12.89□□□□□ -0.35
VPS53-218ENST00000575207 PRR23D1E9PI22 279 aaPredicted RBP12.89□□□□□ -0.35
VPS53-218ENST00000575207 DUX4L4P0CJ87 422 aa12.89□□□□□ -0.35
VPS53-218ENST00000575207 PRR23D2P0DMB1 279 aaPredicted RBP12.89□□□□□ -0.35
VPS53-218ENST00000575207 LAP3P28838 519 aa12.89□□□□□ -0.35
VPS53-218ENST00000575207 ERVFRD-1P60508 538 aa12.89□□□□□ -0.35
VPS53-218ENST00000575207 RPL23AP62750 156 aaKnown RBP12.89□□□□□ -0.35
VPS53-218ENST00000575207 UGT3A2Q3SY77 523 aa12.89□□□□□ -0.35
VPS53-218ENST00000575207 TEX36Q5VZQ5 186 aa12.89□□□□□ -0.35
VPS53-218ENST00000575207 C1orf94Q6P1W5 598 aa12.89□□□□□ -0.35
VPS53-218ENST00000575207 RPP25LQ8N5L8 163 aaKnown RBP12.89□□□□□ -0.35
VPS53-218ENST00000575207 ITCHQ96J02 903 aa12.89□□□□□ -0.35
VPS53-218ENST00000575207 SMURF2Q9HAU4 748 aa12.89□□□□□ -0.35
VPS53-218ENST00000575207 IFT52Q9Y366 437 aa12.89□□□□□ -0.35
VPS53-218ENST00000575207 UTP11Q9Y3A2 253 aaKnown RBP12.89□□□□□ -0.35
VPS53-218ENST00000575207 J3QW42 95 aa12.88□□□□□ -0.35
VPS53-218ENST00000575207 PTBP3O95758 552 aaKnown RBP12.88□□□□□ -0.35
VPS53-218ENST00000575207 BCHEP06276 602 aa12.88□□□□□ -0.35
VPS53-218ENST00000575207 CASP8Q14790 479 aa12.88□□□□□ -0.35
VPS53-218ENST00000575207 PLA1AQ53H76 456 aa12.88□□□□□ -0.35
VPS53-218ENST00000575207 RPS26P11Q5JNZ5 115 aaPredicted RBP12.88□□□□□ -0.35
VPS53-218ENST00000575207 RPS4Y2Q8TD47 263 aa12.88□□□□□ -0.35
VPS53-218ENST00000575207 CPPED1Q9BRF8 314 aaPredicted RBP12.88□□□□□ -0.35
VPS53-218ENST00000575207 PTTG3PQ9NZH4 202 aa12.88□□□□□ -0.35
VPS53-218ENST00000575207 MCIDASD6RGH6 385 aa12.87□□□□□ -0.35
VPS53-218ENST00000575207 LY86O95711 162 aa12.87□□□□□ -0.35
VPS53-218ENST00000575207 HCKP08631 526 aa12.87□□□□□ -0.35
VPS53-218ENST00000575207 ACADSP16219 412 aa12.87□□□□□ -0.35
VPS53-218ENST00000575207 PAFAH1B1P43034 410 aa12.87□□□□□ -0.35
VPS53-218ENST00000575207 SELPLGQ14242 412 aa12.87□□□□□ -0.35
VPS53-218ENST00000575207 OR2W3Q7Z3T1 314 aa12.87□□□□□ -0.35
VPS53-218ENST00000575207 RANBP3LQ86VV4 465 aaPredicted RBP12.87□□□□□ -0.35
VPS53-218ENST00000575207 TRIML2Q8N7C3 387 aa12.87□□□□□ -0.35
VPS53-218ENST00000575207 PCYOX1LQ8NBM8 494 aa12.87□□□□□ -0.35
VPS53-218ENST00000575207 OR5D13Q8NGL4 314 aa12.87□□□□□ -0.35
VPS53-218ENST00000575207 AENQ8WTP8 325 aaKnown RBP12.87□□□□□ -0.35
VPS53-218ENST00000575207 RASD2Q96D21 266 aa12.87□□□□□ -0.35
VPS53-218ENST00000575207 NMD3Q96D46 503 aaKnown RBP12.87□□□□□ -0.35
VPS53-218ENST00000575207 TMEM43Q9BTV4 400 aa12.87□□□□□ -0.35
VPS53-218ENST00000575207 NUF2Q9BZD4 464 aa12.87□□□□□ -0.35
VPS53-218ENST00000575207 IGKV1D-43A0A0B4J1Z2 117 aa12.86□□□□□ -0.35
VPS53-218ENST00000575207 CCDC154A6NI56 674 aa12.86□□□□□ -0.35
VPS53-218ENST00000575207 TRMUO75648 421 aaKnown RBP12.86□□□□□ -0.35
VPS53-218ENST00000575207 FGF4P08620 206 aa12.86□□□□□ -0.35
VPS53-218ENST00000575207 FMODQ06828 376 aa12.86□□□□□ -0.35
VPS53-218ENST00000575207 POU4F2Q12837 409 aa12.86□□□□□ -0.35
VPS53-218ENST00000575207 BLMHQ13867 455 aa12.86□□□□□ -0.35
VPS53-218ENST00000575207 C18orf65Q6ZTR6 163 aa12.86□□□□□ -0.35
VPS53-218ENST00000575207 HDDC2Q7Z4H3 204 aa12.86□□□□□ -0.35
VPS53-218ENST00000575207 SYT9Q86SS6 491 aa12.86□□□□□ -0.35
VPS53-218ENST00000575207 GCSAMQ8N6F7 178 aa12.86□□□□□ -0.35
VPS53-218ENST00000575207 PLPP7Q8NBV4 271 aa12.86□□□□□ -0.35
VPS53-218ENST00000575207 SLC26A10Q8NG04 563 aa12.86□□□□□ -0.35
VPS53-218ENST00000575207 SLC38A5Q8WUX1 472 aa12.86□□□□□ -0.35
VPS53-218ENST00000575207 DCDC2Q9UHG0 476 aa12.86□□□□□ -0.35
VPS53-218ENST00000575207 KCNG2Q9UJ96 466 aa12.86□□□□□ -0.35
VPS53-218ENST00000575207 FAT2Q9NYQ8 4349 aa12.86□□□□□ -0.35
VPS53-218ENST00000575207 HSPG2P98160 4391 aa12.85□□□□□ -0.35
VPS53-218ENST00000575207 FAM90A8PA6NJQ4 464 aa12.85□□□□□ -0.35
VPS53-218ENST00000575207 DOK2O60496 412 aa12.85□□□□□ -0.35
VPS53-218ENST00000575207 PTMSP20962 102 aa12.85□□□□□ -0.35
VPS53-218ENST00000575207 DYNAPQ8N1N2 210 aa12.85□□□□□ -0.35
VPS53-218ENST00000575207 OR5L1Q8NGL2 311 aa12.85□□□□□ -0.35
VPS53-218ENST00000575207 OR5M8Q8NGP6 311 aa12.85□□□□□ -0.35
VPS53-218ENST00000575207 ASB10Q8WXI3 467 aa12.85□□□□□ -0.35
VPS53-218ENST00000575207 LYZL4Q96KX0 146 aa12.85□□□□□ -0.35
VPS53-218ENST00000575207 CCL13Q99616 98 aa12.85□□□□□ -0.35
VPS53-218ENST00000575207 ABCB10Q9NRK6 738 aa12.85□□□□□ -0.35
VPS53-218ENST00000575207 A0A0B4J2E0 115 aa12.84□□□□□ -0.35
VPS53-218ENST00000575207 A0A0G2JPF8 293 aa12.84□□□□□ -0.35
VPS53-218ENST00000575207 A0A1B0GX12 115 aa12.84□□□□□ -0.35
VPS53-218ENST00000575207 GMNCA6NCL1 334 aa12.84□□□□□ -0.35
VPS53-218ENST00000575207 C12orf71A8MTZ7 269 aa12.84□□□□□ -0.35
VPS53-218ENST00000575207 HNRNPCL2B2RXH8 293 aa12.84□□□□□ -0.35
VPS53-218ENST00000575207 SEC14L6B5MCN3 397 aa12.84□□□□□ -0.35
VPS53-218ENST00000575207 HNRNPCL3B7ZW38 293 aa12.84□□□□□ -0.35
VPS53-218ENST00000575207 HNRNPCL1O60812 293 aaKnown RBP12.84□□□□□ -0.35
VPS53-218ENST00000575207 HNRNPCL4P0DMR1 293 aa12.84□□□□□ -0.35
VPS53-218ENST00000575207 GSK3BP49841 420 aa12.84□□□□□ -0.35
VPS53-218ENST00000575207 ELF3P78545 371 aaPredicted RBP12.84□□□□□ -0.35
VPS53-218ENST00000575207 ECH1Q13011 328 aa12.84□□□□□ -0.35
VPS53-218ENST00000575207 MAD2L1Q13257 205 aaPredicted RBP12.84□□□□□ -0.35
VPS53-218ENST00000575207 ENDOGQ14249 297 aaKnown RBP12.84□□□□□ -0.35
VPS53-218ENST00000575207 BEND6Q5SZJ8 279 aaPredicted RBP12.84□□□□□ -0.35
VPS53-218ENST00000575207 SLC36A1Q7Z2H8 476 aa12.84□□□□□ -0.35
VPS53-218ENST00000575207 SLC30A8Q8IWU4 369 aa12.84□□□□□ -0.35
VPS53-218ENST00000575207 FAM216BQ8N7L0 139 aa12.84□□□□□ -0.35
VPS53-218ENST00000575207 GOLGA6L1Q8N7Z2 621 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms