RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 UCP2P55851 309 aa17.75■□□□□ 0.43
VPS53-210ENST00000571456 TPTEP56180 551 aa17.75■□□□□ 0.43
VPS53-210ENST00000571456 HGFACQ04756 655 aa17.75■□□□□ 0.43
VPS53-210ENST00000571456 EIF2B1Q14232 305 aaKnown RBP17.75■□□□□ 0.43
VPS53-210ENST00000571456 LYPD4Q6UWN0 246 aa17.75■□□□□ 0.43
VPS53-210ENST00000571456 CFAP77Q6ZQR2 320 aa17.75■□□□□ 0.43
VPS53-210ENST00000571456 SMAP2Q8WU79 429 aaPredicted RBP17.75■□□□□ 0.43
VPS53-210ENST00000571456 RNF133Q8WVZ7 376 aa17.75■□□□□ 0.43
VPS53-210ENST00000571456 SLAMF6Q96DU3 332 aa17.75■□□□□ 0.43
VPS53-210ENST00000571456 C4orf45Q96LM5 186 aa17.75■□□□□ 0.43
VPS53-210ENST00000571456 PNRC2Q9NPJ4 139 aaKnown RBP17.75■□□□□ 0.43
VPS53-210ENST00000571456 LAMP5Q9UJQ1 280 aa17.75■□□□□ 0.43
VPS53-210ENST00000571456 E7EQL1 145 aa17.74■□□□□ 0.43
VPS53-210ENST00000571456 SMAD7O15105 426 aaKnown RBP17.74■□□□□ 0.43
VPS53-210ENST00000571456 ABHD16AO95870 558 aa17.74■□□□□ 0.43
VPS53-210ENST00000571456 SBK2P0C263 348 aa17.74■□□□□ 0.43
VPS53-210ENST00000571456 ALOX5APP20292 161 aa17.74■□□□□ 0.43
VPS53-210ENST00000571456 CCNOP22674 350 aa17.74■□□□□ 0.43
VPS53-210ENST00000571456 OTX1P32242 354 aaPredicted RBP17.74■□□□□ 0.43
VPS53-210ENST00000571456 ATP6V1E1P36543 226 aa17.74■□□□□ 0.43
VPS53-210ENST00000571456 MTNR1AP48039 350 aa17.74■□□□□ 0.43
VPS53-210ENST00000571456 EVX1P49640 407 aa17.74■□□□□ 0.43
VPS53-210ENST00000571456 SELENOVP59797 346 aa17.74■□□□□ 0.43
VPS53-210ENST00000571456 IL5RAQ01344 420 aa17.74■□□□□ 0.43
VPS53-210ENST00000571456 TAF13Q15543 124 aa17.74■□□□□ 0.43
VPS53-210ENST00000571456 KRTAP27-1Q3LI81 207 aa17.74■□□□□ 0.43
VPS53-210ENST00000571456 Q5PR19 223 aa17.74■□□□□ 0.43
VPS53-210ENST00000571456 DTX2Q86UW9 622 aa17.74■□□□□ 0.43
VPS53-210ENST00000571456 PHC2Q8IXK0 858 aa17.74■□□□□ 0.43
VPS53-210ENST00000571456 C8orf59Q8N0T1 100 aaPredicted RBP17.74■□□□□ 0.43
VPS53-210ENST00000571456 OR5L1Q8NGL2 311 aa17.74■□□□□ 0.43
VPS53-210ENST00000571456 TFAP2CQ92754 450 aa17.74■□□□□ 0.43
VPS53-210ENST00000571456 ABHD6Q9BV23 337 aa17.74■□□□□ 0.43
VPS53-210ENST00000571456 ADGRL4Q9HBW9 690 aa17.74■□□□□ 0.43
VPS53-210ENST00000571456 DNAJC27Q9NZQ0 273 aa17.74■□□□□ 0.43
VPS53-210ENST00000571456 CMAHPQ9Y471 501 aa17.74■□□□□ 0.43
VPS53-210ENST00000571456 SELENOFO60613 162 aa17.73■□□□□ 0.43
VPS53-210ENST00000571456 ZNF254O75437 659 aa17.73■□□□□ 0.43
VPS53-210ENST00000571456 OR2T7P0C7T2 308 aa17.73■□□□□ 0.43
VPS53-210ENST00000571456 VHLP40337 213 aa17.73■□□□□ 0.43
VPS53-210ENST00000571456 FABP6P51161 128 aa17.73■□□□□ 0.43
VPS53-210ENST00000571456 ACTC1P68032 377 aa17.73■□□□□ 0.43
VPS53-210ENST00000571456 ACTA1P68133 377 aa17.73■□□□□ 0.43
VPS53-210ENST00000571456 MAD2L1BPQ15013 274 aaPredicted RBP17.73■□□□□ 0.43
VPS53-210ENST00000571456 EFNB3Q15768 340 aa17.73■□□□□ 0.43
VPS53-210ENST00000571456 MOGQ16653 247 aa17.73■□□□□ 0.43
VPS53-210ENST00000571456 KRT80Q6KB66 452 aa17.73■□□□□ 0.43
VPS53-210ENST00000571456 DRAM2Q6UX65 266 aa17.73■□□□□ 0.43
VPS53-210ENST00000571456 MUC15Q8N387 334 aa17.73■□□□□ 0.43
VPS53-210ENST00000571456 OR2T27Q8NH04 317 aa17.73■□□□□ 0.43
VPS53-210ENST00000571456 APOBEC3DQ96AK3 386 aaPredicted RBP17.73■□□□□ 0.43
VPS53-210ENST00000571456 KCNJ15Q99712 375 aa17.73■□□□□ 0.43
VPS53-210ENST00000571456 COPS4Q9BT78 406 aa17.73■□□□□ 0.43
VPS53-210ENST00000571456 RPL36Q9Y3U8 105 aaKnown RBP17.73■□□□□ 0.43
VPS53-210ENST00000571456 IRGMA1A4Y4 181 aa17.72■□□□□ 0.43
VPS53-210ENST00000571456 B9A039 149 aa17.72■□□□□ 0.43
VPS53-210ENST00000571456 SMPD2O60906 423 aa17.72■□□□□ 0.43
VPS53-210ENST00000571456 ENTPD6O75354 484 aa17.72■□□□□ 0.43
VPS53-210ENST00000571456 DANCRP0C864 163 aa17.72■□□□□ 0.43
VPS53-210ENST00000571456 DCTDP32321 178 aa17.72■□□□□ 0.43
VPS53-210ENST00000571456 SERPINF1P36955 418 aa17.72■□□□□ 0.43
VPS53-210ENST00000571456 NAA10P41227 235 aaPredicted RBP17.72■□□□□ 0.43
VPS53-210ENST00000571456 DBPQ10586 325 aaPredicted RBP17.72■□□□□ 0.43
VPS53-210ENST00000571456 OTPQ5XKR4 325 aa17.72■□□□□ 0.43
VPS53-210ENST00000571456 RGS7BPQ6MZT1 257 aaPredicted RBP17.72■□□□□ 0.43
VPS53-210ENST00000571456 B3GLCTQ6Y288 498 aa17.72■□□□□ 0.43
VPS53-210ENST00000571456 USP51Q70EK9 711 aa17.72■□□□□ 0.43
VPS53-210ENST00000571456 BCDIN3DQ7Z5W3 292 aaKnown RBP17.72■□□□□ 0.43
VPS53-210ENST00000571456 HIST2H2ABQ8IUE6 130 aaPredicted RBP17.72■□□□□ 0.43
VPS53-210ENST00000571456 EGFL6Q8IUX8 553 aa17.72■□□□□ 0.43
VPS53-210ENST00000571456 THEM6Q8WUY1 208 aa17.72■□□□□ 0.43
VPS53-210ENST00000571456 TMEM171Q8WVE6 324 aa17.72■□□□□ 0.43
VPS53-210ENST00000571456 CXorf56Q9H5V9 222 aa17.72■□□□□ 0.43
VPS53-210ENST00000571456 CBLN4Q9NTU7 201 aa17.72■□□□□ 0.43
VPS53-210ENST00000571456 GPR160Q9UJ42 338 aa17.72■□□□□ 0.43
VPS53-210ENST00000571456 ZNF670-ZNF695F2Z2N8 137 aa17.71■□□□□ 0.43
VPS53-210ENST00000571456 M0R135 149 aa17.71■□□□□ 0.43
VPS53-210ENST00000571456 CCL2P13500 99 aa17.71■□□□□ 0.43
VPS53-210ENST00000571456 RPS27P42677 84 aaKnown RBP17.71■□□□□ 0.43
VPS53-210ENST00000571456 AQP4P55087 323 aa17.71■□□□□ 0.43
VPS53-210ENST00000571456 ISL1P61371 349 aa17.71■□□□□ 0.43
VPS53-210ENST00000571456 ROM1Q03395 351 aa17.71■□□□□ 0.43
VPS53-210ENST00000571456 EGR3Q06889 387 aa17.71■□□□□ 0.43
VPS53-210ENST00000571456 TMEM154Q6P9G4 183 aa17.71■□□□□ 0.43
VPS53-210ENST00000571456 COLCA1Q6ZS62 124 aa17.71■□□□□ 0.43
VPS53-210ENST00000571456 SLC35F2Q8IXU6 374 aa17.71■□□□□ 0.43
VPS53-210ENST00000571456 PAQR4Q8N4S7 273 aaPredicted RBP17.71■□□□□ 0.43
VPS53-210ENST00000571456 OR51G2Q8NGK0 314 aa17.71■□□□□ 0.43
VPS53-210ENST00000571456 OR10S1Q8NGN2 331 aa17.71■□□□□ 0.43
VPS53-210ENST00000571456 NEUROG1Q92886 237 aa17.71■□□□□ 0.43
VPS53-210ENST00000571456 UBE2FQ969M7 185 aa17.71■□□□□ 0.43
VPS53-210ENST00000571456 MRPL24Q96A35 216 aaKnown RBP17.71■□□□□ 0.43
VPS53-210ENST00000571456 MRPL48Q96GC5 212 aaKnown RBP17.71■□□□□ 0.43
VPS53-210ENST00000571456 ZNF799Q96GE5 643 aa17.71■□□□□ 0.43
VPS53-210ENST00000571456 MROQ9BYG7 248 aa17.71■□□□□ 0.43
VPS53-210ENST00000571456 CENPMQ9NSP4 180 aa17.71■□□□□ 0.43
VPS53-210ENST00000571456 MRPS18AQ9NVS2 196 aaKnown RBP17.71■□□□□ 0.43
VPS53-210ENST00000571456 GRIP1Q9Y3R0 1128 aa17.71■□□□□ 0.43
VPS53-210ENST00000571456 CRLF1O75462 422 aa17.7■□□□□ 0.42
VPS53-210ENST00000571456 FADS2O95864 444 aaKnown RBP17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms