RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 ATPAF1Q5TC12 328 aaPredicted RBP13.88□□□□□ -0.19
CIITA-204ENST00000570546 ABHD5Q8WTS1 349 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 OR2A5Q96R48 311 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 NDUFB6O95139 128 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 VAMP5O95183 116 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 PTHLHP12272 177 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 AADACP22760 399 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 TAS2R30P59541 319 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 THSD4Q6ZMP0 1018 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 OR1J2Q8NGS2 313 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 C8orf44Q96CB5 159 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 ST6GAL2Q96JF0 529 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 KPTNQ9Y664 436 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 RAB19A4D1S5 217 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 ABOP16442 354 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 CLLU1Q5K131 121 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 RBMS3Q6XE24 437 aaKnown RBP13.88□□□□□ -0.19
CIITA-204ENST00000570546 SLC52A3Q9NQ40 469 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 FBXL4Q9UKA2 621 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 LRP12Q9Y561 859 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 YKT6O15498 198 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 LILRB5O75023 590 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 PI3P19957 117 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 GABRA2P47869 451 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 UBE2IP63279 158 aaKnown RBP13.88□□□□□ -0.19
CIITA-204ENST00000570546 FAM74A1Q5RGS3 127 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 KCNIP4Q6PIL6 250 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 MRGPRX4Q96LA9 322 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 OR6C68A6NDL8 312 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 HYAL3O43820 417 aaPredicted RBP13.87□□□□□ -0.19
CIITA-204ENST00000570546 OR13C7P0DN81 318 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 RPS19BP1Q86WX3 136 aaKnown RBP13.87□□□□□ -0.19
CIITA-204ENST00000570546 BATF2Q8N1L9 274 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 GPR119Q8TDV5 335 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 ST8SIA2Q92186 375 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 LRRC61Q9BV99 259 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 GDF2Q9UK05 429 aaPredicted RBP13.87□□□□□ -0.19
CIITA-204ENST00000570546 TAF1LQ8IZX4 1826 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 PLSCR5A0PG75 271 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 ST8SIA3O43173 380 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 MVDP53602 400 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 PCK2Q16822 640 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 GSG1Q2KHT4 349 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 VN1R4Q7Z5H5 301 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 OR10Z1Q8NGY1 313 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 OR2G3Q8NGZ4 309 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 C14orf79Q96F83 325 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 NUDT9Q9BW91 350 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 PLA2G2FQ9BZM2 168 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 MRPS2Q9Y399 296 aaKnown RBP13.87□□□□□ -0.19
CIITA-204ENST00000570546 OR6C6A6NF89 314 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 C17orf112F2Z3M2 114 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 M0R135 149 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 SHOXO15266 292 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 BCL2L11O43521 198 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 ZFPL1O95159 310 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 CLDN1O95832 211 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 PDZK1IP1Q13113 114 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 DUSP18Q8NEJ0 188 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 PPP1R1CQ8WVI7 109 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 ZNF799Q96GE5 643 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 KIRREL1Q96J84 757 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 DHRS9Q9BPW9 319 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 RBBP6Q7Z6E9 1792 aaKnown RBP13.87□□□□□ -0.19
CIITA-204ENST00000570546 ZNF705GA8MUZ8 300 aaPredicted RBP13.87□□□□□ -0.19
CIITA-204ENST00000570546 JTBO76095 146 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 EDN3P14138 238 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 RNF4P78317 190 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 FOXF1Q12946 379 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 LTC4SQ16873 150 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 ELFN2Q5R3F8 820 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 CST9LP1Q5W188 147 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 OR4C3Q8NH37 302 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 EMG1Q92979 244 aaKnown RBP13.87□□□□□ -0.19
CIITA-204ENST00000570546 SEH1LQ96EE3 360 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 MIXL1Q9H2W2 232 aa13.87□□□□□ -0.19
CIITA-204ENST00000570546 NRG2O14511 850 aaPredicted RBP13.86□□□□□ -0.19
CIITA-204ENST00000570546 P2RX3P56373 397 aa13.86□□□□□ -0.19
CIITA-204ENST00000570546 BAXQ07812 192 aa13.86□□□□□ -0.19
CIITA-204ENST00000570546 BAMBIQ13145 260 aa13.86□□□□□ -0.19
CIITA-204ENST00000570546 WDR38Q5JTN6 314 aa13.86□□□□□ -0.19
CIITA-204ENST00000570546 C17orf107Q6ZR85 190 aa13.86□□□□□ -0.19
CIITA-204ENST00000570546 NIPSNAP3BQ9BS92 247 aa13.86□□□□□ -0.19
CIITA-204ENST00000570546 C20orf24Q9BUV8 137 aa13.86□□□□□ -0.19
CIITA-204ENST00000570546 BARHL1Q9BZE3 327 aa13.86□□□□□ -0.19
CIITA-204ENST00000570546 TMEM231Q9H6L2 316 aa13.86□□□□□ -0.19
CIITA-204ENST00000570546 SLC39A9Q9NUM3 307 aa13.86□□□□□ -0.19
CIITA-204ENST00000570546 PURGQ9UJV8 347 aaKnown RBP13.86□□□□□ -0.19
CIITA-204ENST00000570546 NME2P1O60361 137 aa13.86□□□□□ -0.19
CIITA-204ENST00000570546 SDHBP21912 280 aa13.86□□□□□ -0.19
CIITA-204ENST00000570546 FCGR2CP31995 323 aa13.86□□□□□ -0.19
CIITA-204ENST00000570546 DRD3P35462 400 aa13.86□□□□□ -0.19
CIITA-204ENST00000570546 MAGEB1P43366 347 aa13.86□□□□□ -0.19
CIITA-204ENST00000570546 CYB561P49447 251 aa13.86□□□□□ -0.19
CIITA-204ENST00000570546 RAG2P55895 527 aa13.86□□□□□ -0.19
CIITA-204ENST00000570546 PDLIM3Q53GG5 364 aaPredicted RBP13.86□□□□□ -0.19
CIITA-204ENST00000570546 TMEM182Q6ZP80 229 aaPredicted RBP13.86□□□□□ -0.19
CIITA-204ENST00000570546 CCDC71Q8IV32 467 aaPredicted RBP13.86□□□□□ -0.19
CIITA-204ENST00000570546 DMBX1Q8NFW5 382 aa13.86□□□□□ -0.19
CIITA-204ENST00000570546 ANGPTL6Q8NI99 470 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms