RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 BCDIN3DQ7Z5W3 292 aaKnown RBP14.82□□□□□ -0.04
CLN3-217ENST00000565354 TIGD4Q8IY51 512 aa14.82□□□□□ -0.04
CLN3-217ENST00000565354 C1orf174Q8IYL3 243 aa14.82□□□□□ -0.04
CLN3-217ENST00000565354 PACRGLQ8N7B6 248 aa14.82□□□□□ -0.04
CLN3-217ENST00000565354 SYNPRQ8TBG9 265 aa14.82□□□□□ -0.04
CLN3-217ENST00000565354 THEM6Q8WUY1 208 aa14.82□□□□□ -0.04
CLN3-217ENST00000565354 SLAMF6Q96DU3 332 aa14.82□□□□□ -0.04
CLN3-217ENST00000565354 MAP6Q96JE9 813 aa14.82□□□□□ -0.04
CLN3-217ENST00000565354 HRASLS5Q96KN8 279 aa14.82□□□□□ -0.04
CLN3-217ENST00000565354 RDH12Q96NR8 316 aa14.82□□□□□ -0.04
CLN3-217ENST00000565354 MBOAT4Q96T53 435 aa14.82□□□□□ -0.04
CLN3-217ENST00000565354 TEAD3Q99594 435 aa14.82□□□□□ -0.04
CLN3-217ENST00000565354 SYT3Q9BQG1 590 aa14.82□□□□□ -0.04
CLN3-217ENST00000565354 REG4Q9BYZ8 158 aa14.82□□□□□ -0.04
CLN3-217ENST00000565354 DYNLRB1Q9NP97 96 aa14.82□□□□□ -0.04
CLN3-217ENST00000565354 FBXO9Q9UK97 447 aaPredicted RBP14.82□□□□□ -0.04
CLN3-217ENST00000565354 ZNF878C9JN71 531 aa14.81□□□□□ -0.04
CLN3-217ENST00000565354 CD5LO43866 347 aa14.81□□□□□ -0.04
CLN3-217ENST00000565354 CD8AP01732 235 aa14.81□□□□□ -0.04
CLN3-217ENST00000565354 MRPL3P09001 348 aaKnown RBP14.81□□□□□ -0.04
CLN3-217ENST00000565354 HSD11B1P28845 292 aa14.81□□□□□ -0.04
CLN3-217ENST00000565354 TPTEP56180 551 aa14.81□□□□□ -0.04
CLN3-217ENST00000565354 ERVS71-1P61550 626 aa14.81□□□□□ -0.04
CLN3-217ENST00000565354 PPP1CBP62140 327 aa14.81□□□□□ -0.04
CLN3-217ENST00000565354 EFNB3Q15768 340 aa14.81□□□□□ -0.04
CLN3-217ENST00000565354 SPATA46Q5T0L3 261 aa14.81□□□□□ -0.04
CLN3-217ENST00000565354 RFPL4BQ6ZWI9 263 aa14.81□□□□□ -0.04
CLN3-217ENST00000565354 SPATC1Q76KD6 591 aa14.81□□□□□ -0.04
CLN3-217ENST00000565354 ZNF101Q8IZC7 436 aa14.81□□□□□ -0.04
CLN3-217ENST00000565354 TRUB1Q8WWH5 349 aaKnown RBP14.81□□□□□ -0.04
CLN3-217ENST00000565354 IPCEF1Q8WWN9 437 aaPredicted RBP14.81□□□□□ -0.04
CLN3-217ENST00000565354 COG8Q96MW5 612 aa14.81□□□□□ -0.04
CLN3-217ENST00000565354 CNN2Q99439 309 aaKnown RBP14.81□□□□□ -0.04
CLN3-217ENST00000565354 MRPL37Q9BZE1 423 aaKnown RBP14.81□□□□□ -0.04
CLN3-217ENST00000565354 MARCH7Q9H992 704 aa14.81□□□□□ -0.04
CLN3-217ENST00000565354 YAE1D1Q9NRH1 226 aa14.81□□□□□ -0.04
CLN3-217ENST00000565354 LAMP5Q9UJQ1 280 aa14.81□□□□□ -0.04
CLN3-217ENST00000565354 LOC100130705A0A1B0GUX0 176 aa14.8□□□□□ -0.04
CLN3-217ENST00000565354 CCDC182A6NF36 153 aa14.8□□□□□ -0.04
CLN3-217ENST00000565354 PHF1O43189 567 aaPredicted RBP14.8□□□□□ -0.04
CLN3-217ENST00000565354 LYNP07948 512 aa14.8□□□□□ -0.04
CLN3-217ENST00000565354 PSKH1P11801 424 aa14.8□□□□□ -0.04
CLN3-217ENST00000565354 SLC15A1P46059 708 aa14.8□□□□□ -0.04
CLN3-217ENST00000565354 SLC6A9P48067 706 aa14.8□□□□□ -0.04
CLN3-217ENST00000565354 NUDT6P53370 316 aa14.8□□□□□ -0.04
CLN3-217ENST00000565354 KLF3P57682 345 aaPredicted RBP14.8□□□□□ -0.04
CLN3-217ENST00000565354 SLC34A1Q06495 639 aa14.8□□□□□ -0.04
CLN3-217ENST00000565354 PCK2Q16822 640 aa14.8□□□□□ -0.04
CLN3-217ENST00000565354 AADACL4Q5VUY2 407 aa14.8□□□□□ -0.04
CLN3-217ENST00000565354 C11orf71Q6IPW1 123 aa14.8□□□□□ -0.04
CLN3-217ENST00000565354 SLC16A9Q7RTY1 509 aa14.8□□□□□ -0.04
CLN3-217ENST00000565354 ZNF454Q8N9F8 522 aa14.8□□□□□ -0.04
CLN3-217ENST00000565354 OR5L1Q8NGL2 311 aa14.8□□□□□ -0.04
CLN3-217ENST00000565354 SLC25A40Q8TBP6 338 aa14.8□□□□□ -0.04
CLN3-217ENST00000565354 RFKQ969G6 155 aa14.8□□□□□ -0.04
CLN3-217ENST00000565354 VRK1Q99986 396 aaPredicted RBP14.8□□□□□ -0.04
CLN3-217ENST00000565354 PNRC2Q9NPJ4 139 aaKnown RBP14.8□□□□□ -0.04
CLN3-217ENST00000565354 TBCCD1Q9NVR7 557 aa14.8□□□□□ -0.04
CLN3-217ENST00000565354 FAM118AQ9NWS6 357 aa14.8□□□□□ -0.04
CLN3-217ENST00000565354 DNAJC27Q9NZQ0 273 aa14.8□□□□□ -0.04
CLN3-217ENST00000565354 GPR160Q9UJ42 338 aa14.8□□□□□ -0.04
CLN3-217ENST00000565354 SNTNA6NMZ2 147 aa14.79□□□□□ -0.04
CLN3-217ENST00000565354 M0R135 149 aa14.79□□□□□ -0.04
CLN3-217ENST00000565354 OVOL3O00110 214 aa14.79□□□□□ -0.04
CLN3-217ENST00000565354 CASQ2O14958 399 aaPredicted RBP14.79□□□□□ -0.04
CLN3-217ENST00000565354 NGFP01138 241 aa14.79□□□□□ -0.04
CLN3-217ENST00000565354 ERCC1P07992 297 aaPredicted RBP14.79□□□□□ -0.04
CLN3-217ENST00000565354 H2BFMP0C1H6 154 aa14.79□□□□□ -0.04
CLN3-217ENST00000565354 ATP6V1E1P36543 226 aa14.79□□□□□ -0.04
CLN3-217ENST00000565354 EVX1P49640 407 aa14.79□□□□□ -0.04
CLN3-217ENST00000565354 GRB2P62993 217 aaKnown RBP14.79□□□□□ -0.04
CLN3-217ENST00000565354 EFNB1P98172 346 aa14.79□□□□□ -0.04
CLN3-217ENST00000565354 MOGQ16653 247 aa14.79□□□□□ -0.04
CLN3-217ENST00000565354 NKPD1Q17RQ9 610 aa14.79□□□□□ -0.04
CLN3-217ENST00000565354 SWI5Q1ZZU3 235 aa14.79□□□□□ -0.04
CLN3-217ENST00000565354 CHRFAM7AQ494W8 412 aa14.79□□□□□ -0.04
CLN3-217ENST00000565354 OGFRL1Q5TC84 451 aaPredicted RBP14.79□□□□□ -0.04
CLN3-217ENST00000565354 HIST2H2ABQ8IUE6 130 aaPredicted RBP14.79□□□□□ -0.04
CLN3-217ENST00000565354 ZNF283Q8N7M2 679 aa14.79□□□□□ -0.04
CLN3-217ENST00000565354 OTOSQ8NHW6 89 aa14.79□□□□□ -0.04
CLN3-217ENST00000565354 SNX33Q8WV41 574 aa14.79□□□□□ -0.04
CLN3-217ENST00000565354 CYGBQ8WWM9 190 aa14.79□□□□□ -0.04
CLN3-217ENST00000565354 APOBEC3DQ96AK3 386 aaPredicted RBP14.79□□□□□ -0.04
CLN3-217ENST00000565354 ZNF799Q96GE5 643 aa14.79□□□□□ -0.04
CLN3-217ENST00000565354 APOL4Q9BPW4 351 aa14.79□□□□□ -0.04
CLN3-217ENST00000565354 ABHD6Q9BV23 337 aa14.79□□□□□ -0.04
CLN3-217ENST00000565354 OR2J1Q9GZK6 312 aa14.79□□□□□ -0.04
CLN3-217ENST00000565354 YIPF3Q9GZM5 350 aa14.79□□□□□ -0.04
CLN3-217ENST00000565354 RNPEPL1Q9HAU8 725 aa14.79□□□□□ -0.04
CLN3-217ENST00000565354 DDX28Q9NUL7 540 aaKnown RBP14.79□□□□□ -0.04
CLN3-217ENST00000565354 WARS2Q9UGM6 360 aaKnown RBP14.79□□□□□ -0.04
CLN3-217ENST00000565354 TMEM14AQ9Y6G1 99 aa14.79□□□□□ -0.04
CLN3-217ENST00000565354 J3QW42 95 aa14.78□□□□□ -0.04
CLN3-217ENST00000565354 M0R233 179 aa14.78□□□□□ -0.04
CLN3-217ENST00000565354 MPZL2O60487 215 aa14.78□□□□□ -0.04
CLN3-217ENST00000565354 ICMTO60725 284 aa14.78□□□□□ -0.04
CLN3-217ENST00000565354 LCATP04180 440 aa14.78□□□□□ -0.04
CLN3-217ENST00000565354 TUBG1P23258 451 aa14.78□□□□□ -0.04
CLN3-217ENST00000565354 PRKXP51817 358 aa14.78□□□□□ -0.04
CLN3-217ENST00000565354 POU4F2Q12837 409 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms