RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 IRF3Q14653 427 aa17.87■□□□□ 0.45
CLN3-212ENST00000564574 DAZAP2Q15038 168 aaPredicted RBP17.87■□□□□ 0.45
CLN3-212ENST00000564574 RSPO1Q2MKA7 263 aaPredicted RBP17.87■□□□□ 0.45
CLN3-212ENST00000564574 ZNF829Q3KNS6 432 aaPredicted RBP17.87■□□□□ 0.45
CLN3-212ENST00000564574 DRAM2Q6UX65 266 aa17.87■□□□□ 0.45
CLN3-212ENST00000564574 ZNF283Q8N7M2 679 aa17.87■□□□□ 0.45
CLN3-212ENST00000564574 SLC7A6Q92536 515 aa17.87■□□□□ 0.45
CLN3-212ENST00000564574 ZNF696Q9H7X3 374 aa17.87■□□□□ 0.45
CLN3-212ENST00000564574 GNG8Q9UK08 70 aa17.87■□□□□ 0.45
CLN3-212ENST00000564574 SNX5Q9Y5X3 404 aa17.87■□□□□ 0.45
CLN3-212ENST00000564574 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP17.86■□□□□ 0.45
CLN3-212ENST00000564574 A1L4Q6 167 aa17.86■□□□□ 0.45
CLN3-212ENST00000564574 ACOD1A6NK06 481 aa17.86■□□□□ 0.45
CLN3-212ENST00000564574 J3QW42 95 aa17.86■□□□□ 0.45
CLN3-212ENST00000564574 MT-ND5P03915 603 aa17.86■□□□□ 0.45
CLN3-212ENST00000564574 DBHP09172 617 aa17.86■□□□□ 0.45
CLN3-212ENST00000564574 ACSM4P0C7M7 580 aa17.86■□□□□ 0.45
CLN3-212ENST00000564574 CCNOP22674 350 aa17.86■□□□□ 0.45
CLN3-212ENST00000564574 PCSK6P29122 969 aa17.86■□□□□ 0.45
CLN3-212ENST00000564574 CX3CR1P49238 355 aa17.86■□□□□ 0.45
CLN3-212ENST00000564574 PRKXP51817 358 aa17.86■□□□□ 0.45
CLN3-212ENST00000564574 PSMA6P60900 246 aaKnown RBP17.86■□□□□ 0.45
CLN3-212ENST00000564574 GALK2Q01415 458 aa17.86■□□□□ 0.45
CLN3-212ENST00000564574 BSPH1Q075Z2 132 aa17.86■□□□□ 0.45
CLN3-212ENST00000564574 TP53I3Q53FA7 332 aa17.86■□□□□ 0.45
CLN3-212ENST00000564574 UNQ6126/PRO20091Q6UXV3 157 aa17.86■□□□□ 0.45
CLN3-212ENST00000564574 SVOPQ8N4V2 548 aa17.86■□□□□ 0.45
CLN3-212ENST00000564574 NANOGP1Q8N7R0 232 aa17.86■□□□□ 0.45
CLN3-212ENST00000564574 PLPPR2Q96GM1 343 aa17.86■□□□□ 0.45
CLN3-212ENST00000564574 RADILQ96JH8 1075 aa17.86■□□□□ 0.45
CLN3-212ENST00000564574 C4orf36Q96KX1 117 aa17.86■□□□□ 0.45
CLN3-212ENST00000564574 DOK1Q99704 481 aa17.86■□□□□ 0.45
CLN3-212ENST00000564574 MND1Q9BWT6 205 aa17.86■□□□□ 0.45
CLN3-212ENST00000564574 EIF3KQ9UBQ5 218 aaKnown RBP17.86■□□□□ 0.45
CLN3-212ENST00000564574 CLEC2DQ9UHP7 191 aa17.86■□□□□ 0.45
CLN3-212ENST00000564574 J3QLW9 94 aa17.85■□□□□ 0.45
CLN3-212ENST00000564574 MAGEB4O15481 346 aaPredicted RBP17.85■□□□□ 0.45
CLN3-212ENST00000564574 CD3EP07766 207 aa17.85■□□□□ 0.45
CLN3-212ENST00000564574 HTR1AP08908 422 aa17.85■□□□□ 0.45
CLN3-212ENST00000564574 CCL2P13500 99 aa17.85■□□□□ 0.45
CLN3-212ENST00000564574 ZNF19P17023 458 aa17.85■□□□□ 0.45
CLN3-212ENST00000564574 MMP16P51512 607 aa17.85■□□□□ 0.45
CLN3-212ENST00000564574 OR12D2P58182 307 aa17.85■□□□□ 0.45
CLN3-212ENST00000564574 LIPNQ5VXI9 398 aa17.85■□□□□ 0.45
CLN3-212ENST00000564574 SP5Q6BEB4 398 aaPredicted RBP17.85■□□□□ 0.45
CLN3-212ENST00000564574 ZNF773Q6PK81 442 aa17.85■□□□□ 0.45
CLN3-212ENST00000564574 C1orf174Q8IYL3 243 aa17.85■□□□□ 0.45
CLN3-212ENST00000564574 C4orf45Q96LM5 186 aa17.85■□□□□ 0.45
CLN3-212ENST00000564574 MOB1AQ9H8S9 216 aa17.85■□□□□ 0.45
CLN3-212ENST00000564574 TBCCD1Q9NVR7 557 aa17.85■□□□□ 0.45
CLN3-212ENST00000564574 GRIP1Q9Y3R0 1128 aa17.85■□□□□ 0.45
CLN3-212ENST00000564574 SPEF1Q9Y4P9 236 aa17.85■□□□□ 0.45
CLN3-212ENST00000564574 R4GMQ9 66 aa17.85■□□□□ 0.45
CLN3-212ENST00000564574 PTPN13Q12923 2485 aa17.84■□□□□ 0.45
CLN3-212ENST00000564574 DEFB108AA8MXU0 73 aa17.84■□□□□ 0.45
CLN3-212ENST00000564574 ABCD4O14678 606 aa17.84■□□□□ 0.45
CLN3-212ENST00000564574 COX6B1P14854 86 aa17.84■□□□□ 0.45
CLN3-212ENST00000564574 CALCRP30988 508 aa17.84■□□□□ 0.45
CLN3-212ENST00000564574 SLC6A9P48067 706 aa17.84■□□□□ 0.45
CLN3-212ENST00000564574 GBX2P52951 348 aaPredicted RBP17.84■□□□□ 0.45
CLN3-212ENST00000564574 WNT4P56705 351 aa17.84■□□□□ 0.45
CLN3-212ENST00000564574 TBCEQ15813 527 aaPredicted RBP17.84■□□□□ 0.45
CLN3-212ENST00000564574 ZNF544Q6NX49 715 aa17.84■□□□□ 0.45
CLN3-212ENST00000564574 PAQR4Q8N4S7 273 aaPredicted RBP17.84■□□□□ 0.45
CLN3-212ENST00000564574 SPRYD4Q8WW59 207 aaPredicted RBP17.84■□□□□ 0.45
CLN3-212ENST00000564574 APOBEC3DQ96AK3 386 aaPredicted RBP17.84■□□□□ 0.45
CLN3-212ENST00000564574 COG8Q96MW5 612 aa17.84■□□□□ 0.45
CLN3-212ENST00000564574 PSMG3-AS1Q96PY0 264 aa17.84■□□□□ 0.45
CLN3-212ENST00000564574 C1QTNF5Q9BXJ0 243 aa17.84■□□□□ 0.45
CLN3-212ENST00000564574 ISG20L2Q9H9L3 353 aaKnown RBP17.84■□□□□ 0.45
CLN3-212ENST00000564574 ACOXLQ9NUZ1 547 aa17.84■□□□□ 0.45
CLN3-212ENST00000564574 RTTNQ86VV8 2226 aa17.84■□□□□ 0.45
CLN3-212ENST00000564574 A0A087WXM4 84 aa17.83■□□□□ 0.44
CLN3-212ENST00000564574 TMEM269A0A1B0GVZ9 245 aa17.83■□□□□ 0.44
CLN3-212ENST00000564574 SRSF10O75494 262 aaKnown RBP17.83■□□□□ 0.44
CLN3-212ENST00000564574 TUBG1P23258 451 aa17.83■□□□□ 0.44
CLN3-212ENST00000564574 WNT5AP41221 380 aa17.83■□□□□ 0.44
CLN3-212ENST00000564574 RAD52P43351 418 aa17.83■□□□□ 0.44
CLN3-212ENST00000564574 ZNF121P58317 390 aaPredicted RBP17.83■□□□□ 0.44
CLN3-212ENST00000564574 HGFACQ04756 655 aa17.83■□□□□ 0.44
CLN3-212ENST00000564574 OR2G6Q5TZ20 316 aa17.83■□□□□ 0.44
CLN3-212ENST00000564574 COLCA1Q6ZS62 124 aa17.83■□□□□ 0.44
CLN3-212ENST00000564574 PIAS4Q8N2W9 510 aaPredicted RBP17.83■□□□□ 0.44
CLN3-212ENST00000564574 ZNF485Q8NCK3 441 aa17.83■□□□□ 0.44
CLN3-212ENST00000564574 PELI1Q96FA3 418 aa17.83■□□□□ 0.44
CLN3-212ENST00000564574 PIK3IP1Q96FE7 263 aa17.83■□□□□ 0.44
CLN3-212ENST00000564574 BCL2L14Q9BZR8 327 aa17.83■□□□□ 0.44
CLN3-212ENST00000564574 TUBG2Q9NRH3 451 aa17.83■□□□□ 0.44
CLN3-212ENST00000564574 FAM206AQ9NX38 181 aa17.83■□□□□ 0.44
CLN3-212ENST00000564574 BABAM2Q9NXR7 383 aa17.83■□□□□ 0.44
CLN3-212ENST00000564574 RNF115Q9Y4L5 304 aa17.83■□□□□ 0.44
CLN3-212ENST00000564574 SIAH2O43255 324 aa17.82■□□□□ 0.44
CLN3-212ENST00000564574 RPP14O95059 124 aaKnown RBP17.82■□□□□ 0.44
CLN3-212ENST00000564574 LCATP04180 440 aa17.82■□□□□ 0.44
CLN3-212ENST00000564574 ANXA2P07355 339 aaKnown RBP17.82■□□□□ 0.44
CLN3-212ENST00000564574 NR4A1P22736 598 aa17.82■□□□□ 0.44
CLN3-212ENST00000564574 LOXP28300 417 aaPredicted RBP17.82■□□□□ 0.44
CLN3-212ENST00000564574 CDH15P55291 814 aa17.82■□□□□ 0.44
CLN3-212ENST00000564574 UCP2P55851 309 aa17.82■□□□□ 0.44
CLN3-212ENST00000564574 FDX2Q6P4F2 183 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms