RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 PRR23D2P0DMB1 279 aaPredicted RBP8.02□□□□□ -1.13
LDLR-211ENST00000560173 ZNF823P16415 610 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 EPHA2P29317 976 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 MPV17P39210 176 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 RPS27P42677 84 aaKnown RBP8.02□□□□□ -1.13
LDLR-211ENST00000560173 ALDH3B1P43353 468 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 ENTPD1P49961 510 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 BLVRAP53004 296 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 KLF3P57682 345 aaPredicted RBP8.02□□□□□ -1.13
LDLR-211ENST00000560173 PPP1CBP62140 327 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 APOFQ13790 326 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 MAD2L1BPQ15013 274 aaPredicted RBP8.02□□□□□ -1.13
LDLR-211ENST00000560173 PTGES3Q15185 160 aaKnown RBP8.02□□□□□ -1.13
LDLR-211ENST00000560173 PCK2Q16822 640 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 ZIK1Q3SY52 487 aaPredicted RBP8.02□□□□□ -1.13
LDLR-211ENST00000560173 TEX30Q5JUR7 227 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 SPATA46Q5T0L3 261 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 SLX4IPQ5VYV7 408 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 PLBD1Q6P4A8 553 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 ARL9Q6T311 187 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 UNQ6126/PRO20091Q6UXV3 157 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 CPOQ8IVL8 374 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 C1orf174Q8IYL3 243 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 ZCCHC24Q8N2G6 241 aaKnown RBP8.02□□□□□ -1.13
LDLR-211ENST00000560173 OR10S1Q8NGN2 331 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 OR6K6Q8NGW6 343 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 OR2AJ1Q8NGZ0 328 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 SLC25A40Q8TBP6 338 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 OTULINQ96BN8 352 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 PLEKHA8Q96JA3 519 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 MAP6Q96JE9 813 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 COX4I2Q96KJ9 171 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 HRASLS5Q96KN8 279 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 DCLRE1CQ96SD1 692 aaKnown RBP8.02□□□□□ -1.13
LDLR-211ENST00000560173 MBOAT4Q96T53 435 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 PITX2Q99697 317 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 VRK1Q99986 396 aaPredicted RBP8.02□□□□□ -1.13
LDLR-211ENST00000560173 CDADC1Q9BWV3 514 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 TEX12Q9BXU0 123 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 PRRG3Q9BZD7 231 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 OR2J1Q9GZK6 312 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 RIBC2Q9H4K1 309 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 WDR76Q9H967 626 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 MARCH7Q9H992 704 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 ELOVL3Q9HB03 270 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 HINT3Q9NQE9 182 aaKnown RBP8.02□□□□□ -1.13
LDLR-211ENST00000560173 TBCCD1Q9NVR7 557 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 DUSP13Q9UII6 198 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 TPRKBQ9Y3C4 175 aa8.02□□□□□ -1.13
LDLR-211ENST00000560173 DPPA5A6NC42 116 aa8.01□□□□□ -1.13
LDLR-211ENST00000560173 ZAR1LA6NP61 321 aa8.01□□□□□ -1.13
LDLR-211ENST00000560173 H7C1Q1 480 aa8.01□□□□□ -1.13
LDLR-211ENST00000560173 J3QW42 95 aa8.01□□□□□ -1.13
LDLR-211ENST00000560173 PRODHO43272 600 aa8.01□□□□□ -1.13
LDLR-211ENST00000560173 GLCEO94923 617 aa8.01□□□□□ -1.13
LDLR-211ENST00000560173 IGHV3-13P01766 116 aa8.01□□□□□ -1.13
LDLR-211ENST00000560173 GNAO1P09471 354 aa8.01□□□□□ -1.13
LDLR-211ENST00000560173 SPARCP09486 303 aa8.01□□□□□ -1.13
LDLR-211ENST00000560173 FOSL1P15407 271 aa8.01□□□□□ -1.13
LDLR-211ENST00000560173 SLC2A5P22732 501 aa8.01□□□□□ -1.13
LDLR-211ENST00000560173 GSTT1P30711 240 aa8.01□□□□□ -1.13
LDLR-211ENST00000560173 RGS6P49758 472 aa8.01□□□□□ -1.13
LDLR-211ENST00000560173 SELENOVP59797 346 aa8.01□□□□□ -1.13
LDLR-211ENST00000560173 CDC42P60953 191 aa8.01□□□□□ -1.13
LDLR-211ENST00000560173 ECH1Q13011 328 aa8.01□□□□□ -1.13
LDLR-211ENST00000560173 TNK1Q13470 666 aa8.01□□□□□ -1.13
LDLR-211ENST00000560173 SNAPC1Q16533 368 aa8.01□□□□□ -1.13
LDLR-211ENST00000560173 NKPD1Q17RQ9 610 aa8.01□□□□□ -1.13
LDLR-211ENST00000560173 RSPO1Q2MKA7 263 aaPredicted RBP8.01□□□□□ -1.13
LDLR-211ENST00000560173 ZNF718Q3SXZ3 478 aa8.01□□□□□ -1.13
LDLR-211ENST00000560173 TMEM255AQ5JRV8 349 aa8.01□□□□□ -1.13
LDLR-211ENST00000560173 MBNL2Q5VZF2 373 aaKnown RBP8.01□□□□□ -1.13
LDLR-211ENST00000560173 C12orf73Q69YU5 71 aa8.01□□□□□ -1.13
LDLR-211ENST00000560173 CLEC2AQ6UVW9 174 aa8.01□□□□□ -1.13
LDLR-211ENST00000560173 TIGD4Q8IY51 512 aa8.01□□□□□ -1.13
LDLR-211ENST00000560173 CIARTQ8N365 385 aaPredicted RBP8.01□□□□□ -1.13
LDLR-211ENST00000560173 ZNF525Q8N782 197 aa8.01□□□□□ -1.13
LDLR-211ENST00000560173 BBS1Q8NFJ9 593 aa8.01□□□□□ -1.13
LDLR-211ENST00000560173 KLF14Q8TD94 323 aaPredicted RBP8.01□□□□□ -1.13
LDLR-211ENST00000560173 IPCEF1Q8WWN9 437 aaPredicted RBP8.01□□□□□ -1.13
LDLR-211ENST00000560173 NEU4Q8WWR8 484 aaPredicted RBP8.01□□□□□ -1.13
LDLR-211ENST00000560173 ZMYND19Q96E35 227 aaPredicted RBP8.01□□□□□ -1.13
LDLR-211ENST00000560173 C18orf12Q96KH6 178 aa8.01□□□□□ -1.13
LDLR-211ENST00000560173 INTS14Q96SY0 518 aa8.01□□□□□ -1.13
LDLR-211ENST00000560173 ATF6BQ99941 703 aa8.01□□□□□ -1.13
LDLR-211ENST00000560173 RAB1BQ9H0U4 201 aa8.01□□□□□ -1.13
LDLR-211ENST00000560173 OR51V1Q9H2C8 321 aa8.01□□□□□ -1.13
LDLR-211ENST00000560173 POFUT1Q9H488 388 aa8.01□□□□□ -1.13
LDLR-211ENST00000560173 GSX1Q9H4S2 264 aaPredicted RBP8.01□□□□□ -1.13
LDLR-211ENST00000560173 DDX28Q9NUL7 540 aaKnown RBP8.01□□□□□ -1.13
LDLR-211ENST00000560173 SLCO1C1Q9NYB5 712 aa8.01□□□□□ -1.13
LDLR-211ENST00000560173 TVP23BQ9NYZ1 205 aa8.01□□□□□ -1.13
LDLR-211ENST00000560173 TAAR3PQ9P1P4 343 aa8.01□□□□□ -1.13
LDLR-211ENST00000560173 GRIP1Q9Y3R0 1128 aa8.01□□□□□ -1.13
LDLR-211ENST00000560173 SONP18583 2426 aaKnown RBP8.01□□□□□ -1.13
LDLR-211ENST00000560173 IGHV4-30-2A0A087WSY4 118 aa8□□□□□ -1.13
LDLR-211ENST00000560173 TRIM64CA6NLI5 447 aa8□□□□□ -1.13
LDLR-211ENST00000560173 M0R129 80 aa8□□□□□ -1.13
LDLR-211ENST00000560173 ZNF593O00488 134 aaPredicted RBP8□□□□□ -1.13
LDLR-211ENST00000560173 PRKYO43930 277 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 107.7 ms