RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 NPY4RP50391 375 aa7.66□□□□□ -1.18
HDDC3-204ENST00000559834 ERFP50548 548 aa7.66□□□□□ -1.18
HDDC3-204ENST00000559834 RPS6KA3P51812 740 aa7.66□□□□□ -1.18
HDDC3-204ENST00000559834 MALLQ13021 153 aa7.66□□□□□ -1.18
HDDC3-204ENST00000559834 KRR1Q13601 381 aaKnown RBP7.66□□□□□ -1.18
HDDC3-204ENST00000559834 KCNJ8Q15842 424 aa7.66□□□□□ -1.18
HDDC3-204ENST00000559834 KCNMB1Q16558 191 aa7.66□□□□□ -1.18
HDDC3-204ENST00000559834 DEFB112Q30KQ8 113 aa7.66□□□□□ -1.18
HDDC3-204ENST00000559834 CD276Q5ZPR3 534 aa7.66□□□□□ -1.18
HDDC3-204ENST00000559834 Q6YL49 198 aa7.66□□□□□ -1.18
HDDC3-204ENST00000559834 DPY19L2P2Q6ZN68 376 aa7.66□□□□□ -1.18
HDDC3-204ENST00000559834 DCDC5Q6ZRR9 648 aa7.66□□□□□ -1.18
HDDC3-204ENST00000559834 FAM122BQ7Z309 247 aa7.66□□□□□ -1.18
HDDC3-204ENST00000559834 VTCN1Q7Z7D3 282 aa7.66□□□□□ -1.18
HDDC3-204ENST00000559834 MOGAT3Q86VF5 341 aa7.66□□□□□ -1.18
HDDC3-204ENST00000559834 JAZF1Q86VZ6 243 aa7.66□□□□□ -1.18
HDDC3-204ENST00000559834 TMEM86BQ8N661 226 aa7.66□□□□□ -1.18
HDDC3-204ENST00000559834 CELF2-AS1Q8N7Q2 184 aa7.66□□□□□ -1.18
HDDC3-204ENST00000559834 OR10AD1Q8NGE0 317 aa7.66□□□□□ -1.18
HDDC3-204ENST00000559834 NUAK2Q9H093 628 aa7.66□□□□□ -1.18
HDDC3-204ENST00000559834 SYT4Q9H2B2 425 aa7.66□□□□□ -1.18
HDDC3-204ENST00000559834 KRCC1Q9NPI7 259 aaPredicted RBP7.66□□□□□ -1.18
HDDC3-204ENST00000559834 NRIP3Q9NQ35 241 aa7.66□□□□□ -1.18
HDDC3-204ENST00000559834 SAR1AQ9NR31 198 aa7.66□□□□□ -1.18
HDDC3-204ENST00000559834 VSX1Q9NZR4 365 aaPredicted RBP7.66□□□□□ -1.18
HDDC3-204ENST00000559834 ERVK-18Q9QC07 812 aa7.66□□□□□ -1.18
HDDC3-204ENST00000559834 AURKCQ9UQB9 309 aa7.66□□□□□ -1.18
HDDC3-204ENST00000559834 NOP16Q9Y3C1 178 aaKnown RBP7.66□□□□□ -1.18
HDDC3-204ENST00000559834 IER3IP1Q9Y5U9 82 aa7.66□□□□□ -1.18
HDDC3-204ENST00000559834 P2RY10O00398 339 aa7.65□□□□□ -1.18
HDDC3-204ENST00000559834 CXCR6O00574 342 aa7.65□□□□□ -1.18
HDDC3-204ENST00000559834 NDUFAB1O14561 156 aa7.65□□□□□ -1.18
HDDC3-204ENST00000559834 FUT4P22083 530 aa7.65□□□□□ -1.18
HDDC3-204ENST00000559834 RAD23AP54725 363 aa7.65□□□□□ -1.18
HDDC3-204ENST00000559834 RAG2P55895 527 aa7.65□□□□□ -1.18
HDDC3-204ENST00000559834 RPL15P61313 204 aaKnown RBP7.65□□□□□ -1.18
HDDC3-204ENST00000559834 FGF12P61328 243 aa7.65□□□□□ -1.18
HDDC3-204ENST00000559834 ECH1Q13011 328 aa7.65□□□□□ -1.18
HDDC3-204ENST00000559834 WDR25Q64LD2 544 aaPredicted RBP7.65□□□□□ -1.18
HDDC3-204ENST00000559834 OLFML2AQ68BL7 652 aa7.65□□□□□ -1.18
HDDC3-204ENST00000559834 FIP1L1Q6UN15 594 aaKnown RBP7.65□□□□□ -1.18
HDDC3-204ENST00000559834 CBLL1Q75N03 491 aa7.65□□□□□ -1.18
HDDC3-204ENST00000559834 HDXQ7Z353 690 aa7.65□□□□□ -1.18
HDDC3-204ENST00000559834 FITM2Q8N6M3 262 aa7.65□□□□□ -1.18
HDDC3-204ENST00000559834 KIR3DL3Q8N743 410 aa7.65□□□□□ -1.18
HDDC3-204ENST00000559834 BHLHE23Q8NDY6 225 aa7.65□□□□□ -1.18
HDDC3-204ENST00000559834 TBC1D15Q8TC07 691 aa7.65□□□□□ -1.18
HDDC3-204ENST00000559834 DACT3Q96B18 629 aaPredicted RBP7.65□□□□□ -1.18
HDDC3-204ENST00000559834 FAM46AQ96IP4 442 aaKnown RBP7.65□□□□□ -1.18
HDDC3-204ENST00000559834 CCT8L2Q96SF2 557 aa7.65□□□□□ -1.18
HDDC3-204ENST00000559834 GPX7Q96SL4 187 aaPredicted RBP7.65□□□□□ -1.18
HDDC3-204ENST00000559834 CDADC1Q9BWV3 514 aa7.65□□□□□ -1.18
HDDC3-204ENST00000559834 SLC22A4Q9H015 551 aa7.65□□□□□ -1.18
HDDC3-204ENST00000559834 TRIM36Q9NQ86 728 aa7.65□□□□□ -1.18
HDDC3-204ENST00000559834 RPS6KA6Q9UK32 745 aa7.65□□□□□ -1.18
HDDC3-204ENST00000559834 SIGLEC7Q9Y286 467 aa7.65□□□□□ -1.18
HDDC3-204ENST00000559834 SOX21Q9Y651 276 aaPredicted RBP7.65□□□□□ -1.18
HDDC3-204ENST00000559834 POMT1Q9Y6A1 747 aa7.65□□□□□ -1.18
HDDC3-204ENST00000559834 IGHV3-64DA0A0J9YX35 117 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 MDFIC2A0A1B0GVS7 189 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 A0A1B0GWJ7 208 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 A0A1W2PRQ8 180 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 CLPSL1A2RUU4 121 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 M0QZ24 198 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 SOCS2O14508 198 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 TIMM23O14925 209 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 SLC22A2O15244 555 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 MLNRO43193 412 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 NDUFA2O43678 99 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 TOX4O94842 621 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 NDUFA7O95182 113 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 TXNDC12O95881 172 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 HLA-DPB1P04440 258 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 H1F0P07305 194 aaKnown RBP7.64□□□□□ -1.19
HDDC3-204ENST00000559834 ZNF26P17031 533 aaPredicted RBP7.64□□□□□ -1.19
HDDC3-204ENST00000559834 PMELP40967 661 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 HIST1H3AP68431 136 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 LIPEQ05469 1076 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 COX10Q12887 443 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 DGCR6Q14129 220 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 PDCD1Q15116 288 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 SLC36A3Q495N2 470 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 HIST2H3PS2Q5TEC6 136 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 OTPQ5XKR4 325 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 BRD3OSQ6XYD6 125 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 ZNF620Q6ZNG0 422 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 COLCA1Q6ZS62 124 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 HIST2H3AQ71DI3 136 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 SLC15A3Q8IY34 581 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 PNLDC1Q8NA58 520 aaKnown RBP7.64□□□□□ -1.19
HDDC3-204ENST00000559834 PLPP7Q8NBV4 271 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 OR2AJ1Q8NGZ0 328 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 RP9Q8TA86 221 aaKnown RBP7.64□□□□□ -1.19
HDDC3-204ENST00000559834 Q8TCH9 128 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 SLC7A13Q8TCU3 470 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 SPRYD4Q8WW59 207 aaPredicted RBP7.64□□□□□ -1.19
HDDC3-204ENST00000559834 SSMEM1Q8WWF3 244 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 GATAD2BQ8WXI9 593 aa7.64□□□□□ -1.19
HDDC3-204ENST00000559834 TAF15Q92804 592 aaKnown RBP eCLIP7.64□□□□□ -1.19
HDDC3-204ENST00000559834 HSH2DQ96JZ2 352 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms